Wall clock time and date at job start Tue Mar 31 2020 14:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00208 * 2 1 4 4 C 1.38727 * 120.05974 * 179.97438 * 3 2 1 5 5 C 1.38135 * 119.94709 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05823 * 0.02862 * 5 4 3 7 7 C 1.50698 * 119.94779 * 179.97438 * 6 5 4 8 8 C 1.53000 * 109.47269 * 89.99382 * 7 6 5 9 9 N 1.46898 * 109.46815 * 179.27261 * 8 7 6 10 10 C 1.46900 * 111.00244 * 287.81742 * 9 8 7 11 11 C 1.50705 * 109.47341 * 299.48112 * 10 9 8 12 12 H 1.07998 * 119.99705 * 4.20841 * 11 10 9 13 13 C 1.37870 * 120.00104 * 184.20387 * 11 10 9 14 14 N 1.31517 * 120.00288 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99932 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.46957 * 90.00447 * 15 13 11 17 17 H 1.48504 * 109.47050 * 210.00054 * 15 13 11 18 18 H 1.48493 * 109.47132 * 330.00171 * 15 13 11 19 19 C 1.46905 * 110.99721 * 163.86743 * 9 8 7 20 20 C 1.50704 * 109.46855 * 189.99754 * 19 9 8 21 21 C 1.38669 * 120.42188 * 270.24860 * 20 19 9 22 22 C 1.38630 * 118.41991 * 180.24600 * 21 20 19 23 23 C 1.38226 * 119.16123 * 359.75261 * 22 21 20 24 24 N 1.31850 * 120.76351 * 359.97438 * 23 22 21 25 25 C 1.31879 * 121.72858 * 359.97438 * 24 23 22 26 26 C 1.38270 * 120.10925 * 0.24291 * 6 5 4 27 27 C 1.38145 * 120.05482 * 359.46258 * 26 6 5 28 28 H 1.09000 * 109.47054 * 59.99376 * 1 2 3 29 29 H 1.09000 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47016 * 299.99992 * 1 2 3 31 31 H 1.08006 * 120.02324 * 0.02562 * 4 3 2 32 32 H 1.08004 * 119.97563 * 179.97438 * 5 4 3 33 33 H 1.08997 * 109.46740 * 329.99271 * 7 6 5 34 34 H 1.08999 * 109.47087 * 209.99601 * 7 6 5 35 35 H 1.09005 * 109.46846 * 59.27644 * 8 7 6 36 36 H 1.08991 * 109.47345 * 299.27210 * 8 7 6 37 37 H 1.08999 * 109.46868 * 59.47871 * 10 9 8 38 38 H 1.09004 * 109.47325 * 179.47927 * 10 9 8 39 39 H 0.97000 * 120.00315 * 180.02562 * 14 13 11 40 40 H 1.08995 * 109.47332 * 70.00196 * 19 9 8 41 41 H 1.08994 * 109.46936 * 309.99516 * 19 9 8 42 42 H 1.07997 * 120.78834 * 359.97438 * 21 20 19 43 43 H 1.08001 * 120.41543 * 179.73189 * 22 21 20 44 44 H 1.08001 * 119.61565 * 180.02562 * 23 22 21 45 45 H 1.08001 * 119.62127 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.97320 * 179.70909 * 26 6 5 47 47 H 1.07996 * 120.02980 * 180.24751 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6758 0.0017 7 6 3.9861 5.0185 0.0028 8 6 4.2182 5.4739 -1.4393 9 7 4.8694 6.7907 -1.4380 10 6 3.9307 7.8419 -1.0236 11 6 2.7718 7.8885 -1.9859 12 1 2.7013 7.1619 -2.7818 13 6 1.8017 8.8586 -1.8501 14 7 1.8877 9.7437 -0.8812 15 14 0.3649 8.9159 -3.0425 16 1 -0.7469 8.0826 -2.5183 17 1 -0.0971 10.3191 -3.1938 18 1 0.7964 8.3917 -4.3631 19 6 5.4499 7.0921 -2.7534 20 6 6.3127 8.3235 -2.6515 21 6 5.7680 9.5817 -2.8595 22 6 6.6007 10.6856 -2.7605 23 6 7.9355 10.4973 -2.4549 24 7 8.4179 9.2861 -2.2581 25 6 7.6553 8.2135 -2.3431 26 6 1.9211 3.6048 0.0068 27 6 1.2915 2.3752 0.0001 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0208 0.3799 0.0005 32 1 5.1345 2.5750 0.0019 33 1 4.9438 4.9378 0.5170 34 1 3.3579 5.7459 0.5169 35 1 3.2615 5.5422 -1.9571 36 1 4.8570 4.7532 -1.9495 37 1 3.5620 7.6250 -0.0211 38 1 4.4411 8.8051 -1.0226 39 1 1.2050 10.4260 -0.7854 40 1 4.6496 7.2678 -3.4722 41 1 6.0570 6.2495 -3.0843 42 1 4.7211 9.6984 -3.0973 43 1 6.2113 11.6802 -2.9206 44 1 8.5906 11.3522 -2.3756 45 1 8.0862 7.2375 -2.1757 46 1 1.3342 4.5114 0.0120 47 1 0.2129 2.3202 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207472115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:14 Heat of formation + Delta-G solvation = 5.897571 kcal Electronic energy + Delta-G solvation = -26944.132341 eV Core-core repulsion = 23284.272359 eV Total energy + Delta-G solvation = -3659.859982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.11482 -40.98261 -39.08881 -38.12473 -34.65595 -34.17961 -32.89274 -32.18152 -31.96369 -29.45293 -28.87910 -27.83429 -26.21966 -24.99738 -24.27273 -23.57738 -23.01447 -21.78513 -21.20223 -19.05816 -18.49746 -17.78936 -17.27554 -17.15867 -16.86565 -16.69960 -16.60341 -16.03448 -15.89086 -15.50083 -15.08891 -14.82609 -14.63953 -14.46930 -14.38278 -14.12417 -13.87896 -13.82117 -13.69655 -13.18716 -13.06462 -12.88370 -12.78837 -12.64768 -12.37976 -12.24921 -12.13312 -11.91992 -11.80461 -11.68315 -11.59256 -11.42066 -10.61848 -10.49178 -10.31696 -9.92068 -9.81306 -9.04055 -8.91381 -8.11306 -6.28420 0.30416 0.42452 0.46247 0.49491 1.33151 1.36436 1.43955 2.36778 2.40227 2.79778 2.95600 3.13974 3.52449 3.68778 3.87234 3.97474 4.01358 4.11492 4.17663 4.24809 4.26529 4.28958 4.37522 4.37826 4.49563 4.54047 4.57365 4.66077 4.71310 4.75480 4.83909 4.89692 4.92263 5.05464 5.07905 5.18874 5.29525 5.35570 5.37451 5.38107 5.44457 5.45808 5.59003 5.80075 5.82537 5.86958 5.91152 6.10778 6.29719 6.46706 6.55977 6.92211 7.11900 7.41426 8.90161 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011260 B = 0.003371 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.001463 B = 8303.921514 C =10325.069756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.107 3.893 4 C -0.155 4.155 5 C -0.075 4.075 6 C -0.116 4.116 7 C -0.058 4.058 8 C 0.072 3.928 9 N -0.535 5.535 10 C 0.201 3.799 11 C -0.541 4.541 12 H 0.054 0.946 13 C 0.023 3.977 14 N -0.921 5.921 15 Si 0.938 3.062 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.269 1.269 19 C 0.104 3.896 20 C -0.122 4.122 21 C -0.069 4.069 22 C -0.180 4.180 23 C 0.086 3.914 24 N -0.508 5.508 25 C 0.105 3.895 26 C -0.091 4.091 27 C -0.209 4.209 28 H 0.058 0.942 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.081 0.919 34 H 0.045 0.955 35 H 0.023 0.977 36 H 0.078 0.922 37 H 0.000 1.000 38 H 0.015 0.985 39 H 0.262 0.738 40 H 0.032 0.968 41 H 0.095 0.905 42 H 0.114 0.886 43 H 0.147 0.853 44 H 0.182 0.818 45 H 0.171 0.829 46 H 0.111 0.889 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 -12.799 -1.049 13.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.247 6.247 3 C 0.062 3.938 4 C -0.174 4.174 5 C -0.092 4.092 6 C -0.116 4.116 7 C -0.096 4.096 8 C -0.056 4.056 9 N -0.258 5.258 10 C 0.075 3.925 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.177 4.177 14 N -0.561 5.561 15 Si 0.765 3.235 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.194 1.194 19 C -0.024 4.024 20 C -0.125 4.125 21 C -0.096 4.096 22 C -0.200 4.200 23 C -0.071 4.071 24 N -0.217 5.217 25 C -0.052 4.052 26 C -0.110 4.110 27 C -0.228 4.228 28 H 0.076 0.924 29 H 0.141 0.859 30 H 0.078 0.922 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.100 0.900 34 H 0.064 0.936 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.018 0.982 38 H 0.033 0.967 39 H 0.071 0.929 40 H 0.051 0.949 41 H 0.113 0.887 42 H 0.132 0.868 43 H 0.165 0.835 44 H 0.199 0.801 45 H 0.188 0.812 46 H 0.130 0.870 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.620 -12.963 -0.433 13.768 hybrid contribution -3.340 0.987 -1.138 3.664 sum 1.280 -11.976 -1.571 12.146 Atomic orbital electron populations 1.23300 0.76861 1.05493 1.01892 1.86021 1.23103 1.26622 1.88908 1.19188 0.92900 0.84242 0.97423 1.20656 0.91351 0.99174 1.06204 1.21085 1.00856 0.90218 0.97081 1.19879 0.93511 0.95501 1.02745 1.20324 1.00097 0.92208 0.96985 1.21916 0.97400 0.90058 0.96197 1.62496 1.34648 1.02932 1.25721 1.19431 0.88904 0.90118 0.94089 1.21850 1.08637 1.13323 1.14192 0.92796 1.25569 1.00116 0.95331 0.96663 1.70056 1.35612 1.17565 1.32837 0.85857 0.80444 0.77246 0.79982 1.20439 1.20980 1.19395 1.20834 0.95794 0.94589 0.91161 1.20849 0.95895 0.95585 1.00143 1.21713 0.99777 0.93181 0.94938 1.22334 0.95369 1.00105 1.02146 1.23122 0.93634 0.95357 0.94960 1.67698 1.39705 0.99698 1.14559 1.22817 0.89735 0.98060 0.94565 1.21005 0.94762 0.97290 0.97913 1.21344 1.00749 0.91931 1.08783 0.92362 0.85941 0.92150 0.83519 0.83117 0.90041 0.93602 0.95856 0.90349 0.98184 0.96681 0.92893 0.94938 0.88682 0.86776 0.83530 0.80102 0.81197 0.87042 0.84311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.33 -7.60 10.50 -92.48 -0.97 -8.57 16 3 C 0.11 2.75 6.69 22.51 0.15 2.90 16 4 C -0.16 -3.72 9.99 22.36 0.22 -3.49 16 5 C -0.07 -1.84 9.69 22.25 0.22 -1.63 16 6 C -0.12 -3.45 5.13 -19.85 -0.10 -3.55 16 7 C -0.06 -1.95 5.40 29.85 0.16 -1.79 16 8 C 0.07 2.57 4.78 86.30 0.41 2.99 16 9 N -0.54 -21.23 4.66 -905.36 -4.22 -25.45 16 10 C 0.20 9.91 4.64 85.56 0.40 10.30 16 11 C -0.54 -27.98 7.26 25.60 0.19 -27.80 16 12 H 0.05 2.78 5.95 -2.91 -0.02 2.76 16 13 C 0.02 1.23 5.46 84.65 0.46 1.69 16 14 N -0.92 -52.53 13.29 21.44 0.28 -52.25 16 15 Si 0.94 42.43 29.54 68.60 2.03 44.46 16 16 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 17 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C 0.10 3.74 4.96 85.56 0.42 4.16 16 20 C -0.12 -4.37 4.90 -19.77 -0.10 -4.47 16 21 C -0.07 -2.62 8.07 22.47 0.18 -2.44 16 22 C -0.18 -5.71 10.11 22.36 0.23 -5.48 16 23 C 0.09 2.51 11.18 84.69 0.95 3.45 16 24 N -0.51 -16.37 10.36 -195.84 -2.03 -18.40 16 25 C 0.10 3.37 10.86 84.67 0.92 4.29 16 26 C -0.09 -2.83 9.69 22.26 0.22 -2.61 16 27 C -0.21 -5.59 9.04 22.37 0.20 -5.39 16 28 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 29 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.06 0.85 7.66 -2.39 -0.02 0.83 16 31 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.08 2.49 8.08 -2.39 -0.02 2.47 16 34 H 0.05 1.81 6.68 -2.39 -0.02 1.80 16 35 H 0.02 0.96 6.12 -2.38 -0.01 0.94 16 36 H 0.08 2.37 7.80 -2.39 -0.02 2.35 16 37 H 0.00 0.01 6.68 -2.39 -0.02 -0.01 16 38 H 0.02 0.82 5.92 -2.39 -0.01 0.80 16 39 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 40 H 0.03 1.30 6.57 -2.39 -0.02 1.29 16 41 H 0.09 2.77 7.81 -2.39 -0.02 2.75 16 42 H 0.11 4.94 7.94 -2.91 -0.02 4.92 16 43 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 44 H 0.18 3.86 8.06 -2.91 -0.02 3.83 16 45 H 0.17 4.56 8.06 -2.91 -0.02 4.54 16 46 H 0.11 3.73 8.06 -2.91 -0.02 3.70 16 47 H 0.14 3.12 6.30 -2.91 -0.02 3.10 16 Total: -1.00 -63.57 383.33 2.30 -61.28 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.96 Total: 26.40 kcal Atomic # 6 Polarization: -33.71 SS G_CDS: 6.24 Total: -27.47 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -5.96 Total: -96.09 kcal Atomic # 8 Polarization: -7.60 SS G_CDS: -0.97 Total: -8.57 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal Total: -63.57 2.30 -61.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207472115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.173 kcal (2) G-P(sol) polarization free energy of solvation -63.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds