Wall clock time and date at job start Tue Mar 31 2020 14:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 111.00184 * 2 1 4 4 C 1.46896 * 110.99941 * 123.95503 * 2 1 3 5 5 C 1.53003 * 109.47222 * 169.99646 * 4 2 1 6 6 C 1.50699 * 109.47419 * 179.97438 * 5 4 2 7 7 C 1.38297 * 119.92308 * 270.28566 * 6 5 4 8 8 C 1.38097 * 120.07146 * 180.27903 * 7 6 5 9 9 C 1.38935 * 119.92400 * 359.43937 * 8 7 6 10 10 N 1.39673 * 120.07314 * 180.25753 * 9 8 7 11 11 C 1.39788 * 120.00528 * 320.00169 * 10 9 8 12 12 C 1.38778 * 120.10406 * 352.45708 * 11 10 9 13 13 C 1.38185 * 119.99133 * 179.72196 * 12 11 10 14 14 C 1.38352 * 120.20379 * 0.57525 * 13 12 11 15 15 C 1.38177 * 120.21209 * 359.69613 * 14 13 12 16 16 C 1.38713 * 120.00989 * 0.02562 * 15 14 13 17 17 O 1.35790 * 120.10526 * 180.02562 * 16 15 14 18 18 C 1.34800 * 116.99524 * 6.39692 * 17 16 15 19 19 H 1.07995 * 120.00452 * 354.71278 * 18 17 16 20 20 C 1.38632 * 119.99516 * 174.70571 * 18 17 16 21 21 N 1.31584 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86787 * 120.00330 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47321 * 89.99690 * 22 20 18 24 24 H 1.48505 * 109.47354 * 210.00075 * 22 20 18 25 25 H 1.48502 * 109.47081 * 329.99648 * 22 20 18 26 26 C 1.38940 * 119.84646 * 0.27930 * 9 8 7 27 27 C 1.38093 * 119.92456 * 359.97438 * 26 9 8 28 28 H 1.09000 * 109.46934 * 296.04521 * 1 2 3 29 29 H 1.09004 * 109.47106 * 56.04864 * 1 2 3 30 30 H 1.08994 * 109.47187 * 176.04166 * 1 2 3 31 31 H 1.08997 * 109.47340 * 183.95417 * 3 2 1 32 32 H 1.09002 * 109.47026 * 303.95892 * 3 2 1 33 33 H 1.09001 * 109.46385 * 63.95315 * 3 2 1 34 34 H 1.09003 * 109.47056 * 50.00031 * 4 2 1 35 35 H 1.08995 * 109.47106 * 290.00038 * 4 2 1 36 36 H 1.09003 * 109.46791 * 60.00222 * 5 4 2 37 37 H 1.08995 * 109.47399 * 300.00212 * 5 4 2 38 38 H 1.07998 * 119.95994 * 359.97438 * 7 6 5 39 39 H 1.07999 * 120.03082 * 179.71868 * 8 7 6 40 40 H 0.97006 * 119.99547 * 140.00255 * 10 9 8 41 41 H 1.08007 * 120.00196 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.89493 * 180.27131 * 13 12 11 43 43 H 1.08000 * 119.89065 * 179.72890 * 14 13 12 44 44 H 1.08008 * 119.99049 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.03748 * 180.02562 * 26 9 8 47 47 H 1.07996 * 119.96401 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0446 -1.7407 2.1376 7 6 4.4808 -1.0795 3.2712 8 6 4.9817 -1.7957 4.3404 9 6 5.0364 -3.1827 4.2809 10 7 5.5375 -3.9105 5.3626 11 6 6.6539 -3.4435 6.0622 12 6 7.3603 -2.3451 5.5926 13 6 8.4603 -1.8820 6.2891 14 6 8.8680 -2.5172 7.4486 15 6 8.1742 -3.6150 7.9208 16 6 7.0654 -4.0839 7.2317 17 8 6.3818 -5.1622 7.6942 18 6 6.7496 -5.6504 8.8957 19 1 7.6089 -5.2403 9.4053 20 6 6.0244 -6.6789 9.4772 21 7 6.3831 -7.1552 10.6503 22 14 4.5385 -7.3887 8.5957 23 1 4.9684 -8.5153 7.7291 24 1 3.5573 -7.8802 9.5963 25 1 3.9081 -6.3346 7.7609 26 6 4.5919 -3.8440 3.1427 27 6 4.0970 -3.1213 2.0751 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0251 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1755 35 1 1.7975 -0.2248 2.0627 36 1 3.9909 0.0192 0.9323 37 1 3.7024 -1.4966 0.0451 38 1 4.4341 -0.0015 3.3184 39 1 5.3264 -1.2784 5.2236 40 1 5.1106 -4.7400 5.6284 41 1 7.0480 -1.8499 4.6850 42 1 9.0062 -1.0244 5.9246 43 1 9.7309 -2.1536 7.9866 44 1 8.4954 -4.1079 8.8265 45 1 5.8759 -7.8751 11.0571 46 1 4.6326 -4.9221 3.0932 47 1 3.7510 -3.6347 1.1902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212602736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:27 Heat of formation + Delta-G solvation = 37.281729 kcal Electronic energy + Delta-G solvation = -26453.537007 eV Core-core repulsion = 22795.037944 eV Total energy + Delta-G solvation = -3658.499063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.08975 -39.04254 -37.85269 -36.69105 -35.22449 -32.48236 -32.16778 -30.99411 -29.33431 -29.11049 -27.92233 -27.26399 -25.30354 -24.48441 -22.84371 -22.11082 -21.27719 -21.09792 -20.49046 -17.98178 -17.62603 -17.12439 -16.26754 -16.01447 -15.75062 -15.28699 -14.94119 -14.81428 -14.51169 -14.37746 -14.02800 -13.80254 -13.50899 -13.42019 -13.29873 -13.23706 -12.83055 -12.61175 -12.36819 -12.26594 -12.15331 -12.09309 -11.96085 -11.56476 -11.31850 -11.22708 -11.01800 -10.91277 -10.82660 -10.66367 -10.31818 -10.18815 -9.47531 -8.90563 -8.82289 -8.70961 -8.42305 -7.70560 -6.63929 -6.43075 -4.07937 1.37847 1.49342 2.15779 2.29279 3.17747 3.20394 3.31491 3.60391 3.70967 3.89014 4.18758 4.50824 4.69018 4.72880 4.78872 4.88143 4.97287 5.04735 5.05688 5.07864 5.12304 5.24990 5.31817 5.38139 5.47641 5.51469 5.52861 5.56437 5.58562 5.70798 5.76681 5.85905 5.90313 5.99019 6.07346 6.15605 6.33981 6.46934 6.52387 6.59644 6.65603 6.68695 6.73163 6.80200 6.99596 7.08896 7.29890 7.50260 7.63320 7.89772 8.03110 8.08903 8.91861 9.52387 10.64969 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002661 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.648505 B =10520.984688 C =11905.640939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.020 3.980 4 C 0.059 3.941 5 C -0.068 4.068 6 C -0.126 4.126 7 C -0.088 4.088 8 C -0.160 4.160 9 C 0.191 3.809 10 N -0.680 5.680 11 C 0.124 3.876 12 C -0.150 4.150 13 C -0.164 4.164 14 C -0.113 4.113 15 C -0.191 4.191 16 C 0.115 3.885 17 O -0.225 6.225 18 C -0.383 4.383 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.283 1.283 25 H -0.262 1.262 26 C -0.164 4.164 27 C -0.084 4.084 28 H 0.025 0.975 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.025 0.975 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.130 0.870 40 H 0.413 0.587 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.110 0.890 44 H 0.135 0.865 45 H 0.279 0.721 46 H 0.122 0.878 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 13.565 -18.835 24.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.273 5.273 3 C -0.128 4.128 4 C -0.069 4.069 5 C -0.106 4.106 6 C -0.128 4.128 7 C -0.106 4.106 8 C -0.181 4.181 9 C 0.092 3.908 10 N -0.304 5.304 11 C 0.027 3.973 12 C -0.171 4.171 13 C -0.184 4.184 14 C -0.132 4.132 15 C -0.211 4.211 16 C 0.063 3.937 17 O -0.131 6.131 18 C -0.459 4.459 19 H 0.123 0.877 20 C -0.141 4.141 21 N -0.520 5.520 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.186 1.186 26 C -0.186 4.186 27 C -0.103 4.103 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.044 0.956 34 H 0.094 0.906 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.136 0.864 39 H 0.148 0.852 40 H 0.250 0.750 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.128 0.872 44 H 0.153 0.847 45 H 0.089 0.911 46 H 0.140 0.860 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.202 13.107 -19.179 24.321 hybrid contribution -0.932 -0.389 0.888 1.345 sum -8.134 12.718 -18.291 23.716 Atomic orbital electron populations 1.22378 0.87343 1.02320 1.00413 1.62006 1.07831 1.13972 1.43537 1.22452 1.01226 0.88795 1.00370 1.22181 0.95429 0.98283 0.90994 1.20459 0.94007 0.99740 0.96348 1.19596 1.03343 0.93707 0.96150 1.20788 0.97888 0.99230 0.92731 1.21166 1.03737 0.93145 1.00036 1.17750 0.94550 0.91122 0.87389 1.41921 1.30468 1.26738 1.31254 1.17014 0.90329 0.97196 0.92740 1.20634 0.97567 0.97845 1.01100 1.20494 0.98685 1.01785 0.97388 1.20727 0.99589 0.96185 0.96701 1.21095 0.97294 0.99825 1.02900 1.18627 0.93377 0.89244 0.92496 1.83455 1.55134 1.38586 1.35974 1.20696 1.14602 1.17995 0.92590 0.87664 1.24436 0.98470 0.96034 0.95176 1.69652 1.40484 1.26822 1.14994 0.86203 0.81648 0.79667 0.79422 1.19941 1.20832 1.18646 1.20967 1.05200 1.00085 0.92329 1.20758 0.98469 0.93228 0.97817 0.95674 0.91431 0.91312 0.90940 0.91557 0.95634 0.90626 0.94602 0.91341 0.90501 0.86424 0.85199 0.75013 0.85648 0.87235 0.87220 0.84693 0.91109 0.86034 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.57 60.07 0.57 0.74 16 2 N -0.55 -4.61 5.02 -251.26 -1.26 -5.87 16 3 C 0.02 0.14 9.32 60.07 0.56 0.70 16 4 C 0.06 0.52 4.94 -3.82 -0.02 0.50 16 5 C -0.07 -0.61 5.26 -27.88 -0.15 -0.75 16 6 C -0.13 -1.39 5.14 -104.58 -0.54 -1.93 16 7 C -0.09 -1.03 9.69 -39.61 -0.38 -1.42 16 8 C -0.16 -2.26 7.35 -39.37 -0.29 -2.54 16 9 C 0.19 2.96 5.93 -83.77 -0.50 2.46 16 10 N -0.68 -12.30 5.47 -8.28 -0.05 -12.35 16 11 C 0.12 2.46 6.45 -83.55 -0.54 1.92 16 12 C -0.15 -2.61 7.98 -39.40 -0.31 -2.92 16 13 C -0.16 -2.74 10.04 -39.56 -0.40 -3.14 16 14 C -0.11 -2.02 10.04 -39.56 -0.40 -2.42 16 15 C -0.19 -4.07 9.16 -39.43 -0.36 -4.43 16 16 C 0.12 2.61 6.66 -38.92 -0.26 2.35 16 17 O -0.23 -5.70 7.85 0.01 0.00 -5.70 16 18 C -0.38 -10.57 9.95 30.88 0.31 -10.26 16 19 H 0.11 2.98 5.45 -52.49 -0.29 2.70 16 20 C 0.06 1.70 5.49 -17.51 -0.10 1.61 16 21 N -0.88 -25.24 13.96 55.48 0.77 -24.46 16 22 Si 0.90 21.25 28.61 -169.99 -4.86 16.39 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.26 -6.07 7.11 56.52 0.40 -5.66 16 26 C -0.16 -2.23 9.97 -39.37 -0.39 -2.62 16 27 C -0.08 -0.97 9.69 -39.61 -0.38 -1.36 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 31 H 0.07 0.49 6.47 -51.93 -0.34 0.15 16 32 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 33 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 34 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 35 H 0.04 0.34 8.12 -51.93 -0.42 -0.08 16 36 H 0.07 0.57 6.50 -51.93 -0.34 0.23 16 37 H 0.08 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 39 H 0.13 1.90 6.48 -52.49 -0.34 1.56 16 40 H 0.41 7.70 8.22 -40.82 -0.34 7.36 16 41 H 0.13 1.97 5.25 -52.48 -0.28 1.69 16 42 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.14 3.01 5.65 -52.48 -0.30 2.71 16 45 H 0.28 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.12 1.55 8.06 -52.49 -0.42 1.12 16 47 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -29.04 382.40 -10.03 -39.07 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.83 Total: 10.68 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: -3.57 Total: -23.52 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: -0.53 Total: -42.68 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: 0.00 Total: -5.70 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.86 Total: 16.39 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.04 -10.03 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.351 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds