Wall clock time and date at job start Tue Mar 31 2020 14:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46903 * 111.00184 * 2 1 4 4 C 1.46896 * 110.99941 * 123.95503 * 2 1 3 5 5 C 1.53003 * 109.47222 * 169.99646 * 4 2 1 6 6 C 1.50699 * 109.47419 * 179.97438 * 5 4 2 7 7 C 1.38297 * 119.92308 * 270.28566 * 6 5 4 8 8 C 1.38097 * 120.07146 * 180.27903 * 7 6 5 9 9 C 1.38935 * 119.92400 * 359.43937 * 8 7 6 10 10 N 1.39673 * 120.07314 * 180.25753 * 9 8 7 11 11 C 1.39788 * 120.00528 * 320.00169 * 10 9 8 12 12 C 1.38778 * 120.10406 * 352.45708 * 11 10 9 13 13 C 1.38185 * 119.99133 * 179.72196 * 12 11 10 14 14 C 1.38352 * 120.20379 * 0.57525 * 13 12 11 15 15 C 1.38177 * 120.21209 * 359.69613 * 14 13 12 16 16 C 1.38713 * 120.00989 * 0.02562 * 15 14 13 17 17 O 1.35790 * 120.10526 * 180.02562 * 16 15 14 18 18 C 1.34800 * 116.99524 * 6.39692 * 17 16 15 19 19 H 1.07995 * 120.00452 * 354.71278 * 18 17 16 20 20 C 1.38632 * 119.99516 * 174.70571 * 18 17 16 21 21 N 1.31584 * 119.99655 * 180.02562 * 20 18 17 22 22 Si 1.86787 * 120.00330 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47321 * 89.99690 * 22 20 18 24 24 H 1.48505 * 109.47354 * 210.00075 * 22 20 18 25 25 H 1.48502 * 109.47081 * 329.99648 * 22 20 18 26 26 C 1.38940 * 119.84646 * 0.27930 * 9 8 7 27 27 C 1.38093 * 119.92456 * 359.97438 * 26 9 8 28 28 H 1.09000 * 109.46934 * 296.04521 * 1 2 3 29 29 H 1.09004 * 109.47106 * 56.04864 * 1 2 3 30 30 H 1.08994 * 109.47187 * 176.04166 * 1 2 3 31 31 H 1.08997 * 109.47340 * 183.95417 * 3 2 1 32 32 H 1.09002 * 109.47026 * 303.95892 * 3 2 1 33 33 H 1.09001 * 109.46385 * 63.95315 * 3 2 1 34 34 H 1.09003 * 109.47056 * 50.00031 * 4 2 1 35 35 H 1.08995 * 109.47106 * 290.00038 * 4 2 1 36 36 H 1.09003 * 109.46791 * 60.00222 * 5 4 2 37 37 H 1.08995 * 109.47399 * 300.00212 * 5 4 2 38 38 H 1.07998 * 119.95994 * 359.97438 * 7 6 5 39 39 H 1.07999 * 120.03082 * 179.71868 * 8 7 6 40 40 H 0.97006 * 119.99547 * 140.00255 * 10 9 8 41 41 H 1.08007 * 120.00196 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.89493 * 180.27131 * 13 12 11 43 43 H 1.08000 * 119.89065 * 179.72890 * 14 13 12 44 44 H 1.08008 * 119.99049 * 180.02562 * 15 14 13 45 45 H 0.97002 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.03748 * 180.02562 * 26 9 8 47 47 H 1.07996 * 119.96401 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.5044 -0.9554 0.9703 6 6 4.0446 -1.7407 2.1376 7 6 4.4808 -1.0795 3.2712 8 6 4.9817 -1.7957 4.3404 9 6 5.0364 -3.1827 4.2809 10 7 5.5375 -3.9105 5.3626 11 6 6.6539 -3.4435 6.0622 12 6 7.3603 -2.3451 5.5926 13 6 8.4603 -1.8820 6.2891 14 6 8.8680 -2.5172 7.4486 15 6 8.1742 -3.6150 7.9208 16 6 7.0654 -4.0839 7.2317 17 8 6.3818 -5.1622 7.6942 18 6 6.7496 -5.6504 8.8957 19 1 7.6089 -5.2403 9.4053 20 6 6.0244 -6.6789 9.4772 21 7 6.3831 -7.1552 10.6503 22 14 4.5385 -7.3887 8.5957 23 1 4.9684 -8.5153 7.7291 24 1 3.5573 -7.8802 9.5963 25 1 3.9081 -6.3346 7.7609 26 6 4.5919 -3.8440 3.1427 27 6 4.0970 -3.1213 2.0751 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8525 30 1 -0.3633 -1.0251 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5089 -1.7407 1.1755 35 1 1.7975 -0.2248 2.0627 36 1 3.9909 0.0192 0.9323 37 1 3.7024 -1.4966 0.0451 38 1 4.4341 -0.0015 3.3184 39 1 5.3264 -1.2784 5.2236 40 1 5.1106 -4.7400 5.6284 41 1 7.0480 -1.8499 4.6850 42 1 9.0062 -1.0244 5.9246 43 1 9.7309 -2.1536 7.9866 44 1 8.4954 -4.1079 8.8265 45 1 5.8759 -7.8751 11.0571 46 1 4.6326 -4.9221 3.0932 47 1 3.7510 -3.6347 1.1902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212602736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:26 Heat of formation + Delta-G solvation = 21.290771 kcal Electronic energy + Delta-G solvation = -26454.230427 eV Core-core repulsion = 22795.037944 eV Total energy + Delta-G solvation = -3659.192483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42347 -40.33793 -38.72496 -38.11393 -36.45429 -34.44091 -33.20241 -32.03838 -30.83822 -30.36645 -28.49022 -28.31566 -27.22973 -25.31158 -23.96474 -23.33452 -22.60357 -22.21032 -21.42366 -19.85334 -19.26568 -18.32987 -17.63359 -16.94826 -16.58438 -16.39577 -16.02992 -15.94136 -15.82439 -15.57853 -15.52875 -15.25463 -14.94807 -14.52083 -14.36656 -14.21406 -14.18362 -14.00433 -13.63020 -13.40141 -13.21127 -12.84622 -12.81997 -12.64284 -12.60692 -12.47635 -12.30766 -12.13375 -12.04080 -11.93280 -11.67755 -11.47284 -11.30365 -10.91495 -9.82008 -9.66254 -9.31345 -9.24449 -8.48898 -8.06791 -6.17569 0.25161 0.49688 0.62195 0.87509 1.28398 1.32861 1.46587 2.25401 2.38034 2.74994 2.82039 3.02522 3.10346 3.17879 3.92393 4.06262 4.06687 4.11500 4.18441 4.27773 4.29252 4.36032 4.42916 4.52084 4.54742 4.58968 4.61319 4.66527 4.73035 4.76195 4.77745 4.92569 5.01204 5.02350 5.06978 5.09217 5.17582 5.23170 5.27439 5.43741 5.48124 5.58039 5.64808 5.76341 5.78604 5.89833 5.98989 6.08700 6.11746 6.16819 6.52218 6.70123 6.85679 7.60045 8.63050 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015418 B = 0.002661 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.648505 B =10520.984688 C =11905.640939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.560 5.560 3 C 0.018 3.982 4 C 0.062 3.938 5 C -0.061 4.061 6 C -0.113 4.113 7 C -0.085 4.085 8 C -0.167 4.167 9 C 0.160 3.840 10 N -0.688 5.688 11 C 0.131 3.869 12 C -0.150 4.150 13 C -0.137 4.137 14 C -0.120 4.120 15 C -0.203 4.203 16 C 0.068 3.932 17 O -0.246 6.246 18 C -0.389 4.389 19 H 0.080 0.920 20 C 0.007 3.993 21 N -0.926 5.926 22 Si 0.969 3.031 23 H -0.266 1.266 24 H -0.272 1.272 25 H -0.261 1.261 26 C -0.169 4.169 27 C -0.083 4.083 28 H 0.023 0.977 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.405 0.595 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.139 0.861 44 H 0.111 0.889 45 H 0.283 0.717 46 H 0.124 0.876 47 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 16.138 -22.484 28.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.284 5.284 3 C -0.130 4.130 4 C -0.066 4.066 5 C -0.099 4.099 6 C -0.115 4.115 7 C -0.103 4.103 8 C -0.188 4.188 9 C 0.063 3.937 10 N -0.311 5.311 11 C 0.033 3.967 12 C -0.171 4.171 13 C -0.156 4.156 14 C -0.140 4.140 15 C -0.223 4.223 16 C 0.017 3.983 17 O -0.154 6.154 18 C -0.466 4.466 19 H 0.097 0.903 20 C -0.191 4.191 21 N -0.568 5.568 22 Si 0.792 3.208 23 H -0.191 1.191 24 H -0.197 1.197 25 H -0.185 1.185 26 C -0.190 4.190 27 C -0.101 4.101 28 H 0.042 0.958 29 H 0.096 0.904 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.042 0.958 34 H 0.090 0.910 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.140 0.860 40 H 0.240 0.760 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.157 0.843 44 H 0.129 0.871 45 H 0.092 0.908 46 H 0.142 0.858 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -7.981 15.734 -22.887 28.898 hybrid contribution -0.625 -0.880 1.761 2.065 sum -8.606 14.854 -21.126 27.222 Atomic orbital electron populations 1.22420 0.86732 1.02626 1.00799 1.62025 1.08522 1.14685 1.43124 1.22504 1.01541 0.88194 1.00741 1.22098 0.95272 0.98172 0.91015 1.20440 0.94008 1.00022 0.95425 1.19889 1.01513 0.93685 0.96395 1.21048 0.96837 1.00411 0.92038 1.21180 1.04429 0.92586 1.00591 1.18005 0.96578 0.91740 0.87369 1.41978 1.30286 1.26828 1.32049 1.17267 0.90795 0.97062 0.91611 1.20995 0.97360 0.96932 1.01855 1.21037 0.97374 1.01560 0.95585 1.21034 1.00223 0.95113 0.97608 1.21165 0.97764 1.01079 1.02318 1.19102 0.94634 0.90136 0.94380 1.83397 1.56360 1.40580 1.35087 1.20635 1.14021 1.18242 0.93658 0.90292 1.25232 1.01378 0.96495 0.95972 1.69745 1.42287 1.28142 1.16629 0.85231 0.78255 0.78885 0.78420 1.19146 1.19712 1.18521 1.21115 1.05019 1.00499 0.92375 1.21050 0.97561 0.93643 0.97871 0.95844 0.90399 0.91211 0.90472 0.90665 0.95750 0.91040 0.95265 0.90169 0.89919 0.84039 0.85976 0.75958 0.83303 0.82830 0.84311 0.87128 0.90776 0.85840 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.57 127.69 1.22 1.49 16 2 N -0.56 -7.80 5.02 -948.85 -4.76 -12.56 16 3 C 0.02 0.20 9.32 127.69 1.19 1.39 16 4 C 0.06 0.92 4.94 86.30 0.43 1.34 16 5 C -0.06 -0.86 5.26 29.85 0.16 -0.71 16 6 C -0.11 -2.10 5.14 -19.84 -0.10 -2.20 16 7 C -0.08 -1.72 9.69 22.25 0.22 -1.51 16 8 C -0.17 -4.37 7.35 22.40 0.16 -4.20 16 9 C 0.16 4.77 5.93 38.23 0.23 5.00 16 10 N -0.69 -25.05 5.47 -180.12 -0.99 -26.04 16 11 C 0.13 5.18 6.45 38.31 0.25 5.43 16 12 C -0.15 -4.89 7.98 22.39 0.18 -4.71 16 13 C -0.14 -4.11 10.04 22.28 0.22 -3.89 16 14 C -0.12 -4.17 10.04 22.28 0.22 -3.94 16 15 C -0.20 -9.01 9.16 22.37 0.20 -8.80 16 16 C 0.07 3.20 6.66 22.70 0.15 3.35 16 17 O -0.25 -13.14 7.85 -22.87 -0.18 -13.32 16 18 C -0.39 -22.89 9.95 67.91 0.68 -22.21 16 19 H 0.08 4.89 5.45 -2.91 -0.02 4.88 16 20 C 0.01 0.40 5.49 84.82 0.47 0.86 16 21 N -0.93 -55.76 13.96 21.61 0.30 -55.46 16 22 Si 0.97 45.45 28.61 68.60 1.96 47.41 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 26 C -0.17 -4.31 9.97 22.40 0.22 -4.09 16 27 C -0.08 -1.67 9.69 22.25 0.22 -1.46 16 28 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.08 0.75 8.12 -2.38 -0.02 0.73 16 30 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 31 H 0.08 0.77 6.47 -2.39 -0.02 0.76 16 32 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 33 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 35 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 36 H 0.08 0.99 6.50 -2.39 -0.02 0.97 16 37 H 0.08 1.13 8.08 -2.39 -0.02 1.11 16 38 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.12 3.35 6.48 -2.91 -0.02 3.33 16 40 H 0.41 15.59 8.22 -92.70 -0.76 14.83 16 41 H 0.15 4.19 5.25 -2.91 -0.02 4.18 16 42 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 43 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 44 H 0.11 5.36 5.65 -2.91 -0.02 5.35 16 45 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 46 H 0.12 3.03 8.06 -2.91 -0.02 3.00 16 47 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -66.55 382.40 2.87 -63.68 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.22 Total: 35.15 kcal Atomic # 6 Polarization: -45.17 SS G_CDS: 6.31 Total: -38.86 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -5.44 Total: -94.06 kcal Atomic # 8 Polarization: -13.14 SS G_CDS: -0.18 Total: -13.32 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.96 Total: 47.41 kcal Total: -66.55 2.87 -63.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.973 kcal (2) G-P(sol) polarization free energy of solvation -66.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds