Wall clock time and date at job start Tue Mar 31 2020 14:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46905 * 110.99807 * 2 1 4 4 C 1.46896 * 110.99956 * 123.94975 * 2 1 3 5 5 C 1.53001 * 109.46932 * 66.04966 * 4 2 1 6 6 O 1.42901 * 109.47399 * 64.99449 * 5 4 2 7 7 C 1.35894 * 117.00266 * 179.97438 * 6 5 4 8 8 C 1.38829 * 120.01591 * 0.02562 * 7 6 5 9 9 C 1.38192 * 120.10973 * 179.97438 * 8 7 6 10 10 C 1.38141 * 120.12816 * 0.04559 * 9 8 7 11 11 C 1.38992 * 120.03226 * 359.97438 * 10 9 8 12 12 N 1.39590 * 120.05174 * 180.02562 * 11 10 9 13 13 C 1.38810 * 119.99738 * 328.29273 * 12 11 10 14 14 C 1.39600 * 119.84850 * 334.37376 * 13 12 11 15 15 C 1.36315 * 120.15865 * 179.72204 * 14 13 12 16 16 C 1.40906 * 119.83566 * 0.55155 * 15 14 13 17 17 C 1.41110 * 120.15142 * 179.70306 * 16 15 14 18 18 H 1.07998 * 119.99597 * 27.74980 * 17 16 15 19 19 C 1.39841 * 119.99914 * 207.75295 * 17 16 15 20 20 N 1.30913 * 120.00017 * 12.27558 * 19 17 16 21 21 Si 1.86804 * 119.99950 * 192.27233 * 19 17 16 22 22 H 1.48498 * 109.47022 * 89.99729 * 21 19 17 23 23 H 1.48499 * 109.47125 * 210.00255 * 21 19 17 24 24 H 1.48498 * 109.47052 * 330.00115 * 21 19 17 25 25 C 1.40899 * 119.69703 * 359.72327 * 16 15 14 26 26 C 1.36316 * 119.83797 * 359.97438 * 25 16 15 27 27 C 1.38561 * 120.01792 * 180.30208 * 7 6 5 28 28 H 1.09003 * 109.47006 * 296.04874 * 1 2 3 29 29 H 1.08997 * 109.47283 * 56.04493 * 1 2 3 30 30 H 1.09000 * 109.47010 * 176.04940 * 1 2 3 31 31 H 1.08994 * 109.46788 * 183.95979 * 3 2 1 32 32 H 1.09007 * 109.46772 * 303.95110 * 3 2 1 33 33 H 1.08994 * 109.47244 * 63.95604 * 3 2 1 34 34 H 1.08997 * 109.47771 * 306.04664 * 4 2 1 35 35 H 1.09007 * 109.46643 * 186.04127 * 4 2 1 36 36 H 1.08996 * 109.46916 * 304.99360 * 5 4 2 37 37 H 1.08998 * 109.47250 * 184.99726 * 5 4 2 38 38 H 1.08006 * 119.94806 * 0.02562 * 8 7 6 39 39 H 1.07990 * 119.94035 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.98585 * 179.97438 * 10 9 8 41 41 H 0.97005 * 119.99574 * 148.56974 * 12 11 10 42 42 H 1.08003 * 119.92022 * 0.02562 * 14 13 12 43 43 H 1.08001 * 120.08332 * 180.27950 * 15 14 13 44 44 H 0.97000 * 119.99788 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.08119 * 179.97438 * 25 16 15 46 46 H 1.08000 * 119.92122 * 179.97438 * 26 25 16 47 47 H 1.08000 * 120.06193 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2425 0.9704 6 8 2.2956 -2.7695 -0.1800 7 6 2.0783 -4.0788 -0.4721 8 6 1.2419 -4.8404 0.3328 9 6 1.0191 -6.1718 0.0372 10 6 1.6285 -6.7500 -1.0594 11 6 2.4673 -5.9929 -1.8688 12 7 3.0828 -6.5766 -2.9774 13 6 3.4303 -7.9202 -2.9508 14 6 3.6758 -8.5504 -1.7296 15 6 4.0119 -9.8710 -1.6958 16 6 4.1227 -10.5972 -2.8982 17 6 4.4763 -11.9630 -2.8713 18 1 4.2360 -12.5661 -2.0083 19 6 5.1381 -12.5355 -3.9621 20 7 5.6422 -11.7703 -4.8971 21 14 5.3028 -14.3922 -4.0852 22 1 4.1366 -14.9450 -4.8197 23 1 6.5522 -14.7312 -4.8127 24 1 5.3505 -14.9764 -2.7208 25 6 3.8791 -9.9533 -4.1275 26 6 3.5378 -8.6337 -4.1460 27 6 2.6959 -4.6558 -1.5701 28 1 -0.3633 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0710 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8724 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 0.5533 -2.3388 0.8434 37 1 1.9439 -2.7963 1.8557 38 1 0.7638 -4.3913 1.1909 39 1 0.3677 -6.7616 0.6649 40 1 1.4531 -7.7908 -1.2880 41 1 3.2714 -6.0422 -3.7647 42 1 3.5944 -7.9915 -0.8090 43 1 4.1971 -10.3585 -0.7500 44 1 6.1015 -12.1674 -5.6535 45 1 3.9627 -10.5038 -5.0529 46 1 3.3512 -8.1386 -5.0876 47 1 3.3500 -4.0659 -2.1949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212807116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:56 Heat of formation + Delta-G solvation = 21.964855 kcal Electronic energy + Delta-G solvation = -26056.578619 eV Core-core repulsion = 22397.415367 eV Total energy + Delta-G solvation = -3659.163252 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.05306 -38.74687 -37.67918 -36.74792 -34.72775 -33.03370 -31.09728 -30.08069 -29.58328 -28.66426 -28.01263 -27.92158 -24.99590 -24.41762 -22.53143 -22.03979 -21.15997 -20.68155 -20.10665 -17.99170 -17.31071 -16.59998 -16.49996 -15.92712 -15.70431 -15.41935 -15.25375 -15.00252 -14.77966 -14.51740 -13.95474 -13.61071 -13.17755 -12.99536 -12.84523 -12.77072 -12.66909 -12.45488 -12.16365 -12.09555 -12.06606 -11.74228 -11.59678 -11.51915 -11.29415 -11.15680 -10.93733 -10.75620 -10.64873 -10.53609 -9.99154 -9.73001 -9.38195 -9.09714 -8.68366 -8.15480 -7.76356 -7.59697 -6.71607 -6.50936 -4.23266 1.72294 1.83676 2.80526 3.02494 3.09154 3.12408 3.19352 3.22251 3.58032 3.95912 4.15775 4.19019 4.59816 4.67226 4.70296 4.84622 4.99258 5.03409 5.07754 5.18142 5.21907 5.27338 5.35197 5.47151 5.54276 5.61115 5.67243 5.71849 5.75813 5.87774 6.11118 6.20026 6.30227 6.59262 6.63225 6.65020 6.69291 6.76796 6.86433 6.95909 7.03878 7.09397 7.23780 7.50335 7.57152 7.65506 7.75189 8.02533 8.21619 8.34868 8.46134 8.64127 8.91251 8.98711 10.24855 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.001932 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.170030 B =14490.823502 C =14826.161090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.065 3.935 6 O -0.301 6.301 7 C 0.161 3.839 8 C -0.267 4.267 9 C -0.050 4.050 10 C -0.202 4.202 11 C 0.245 3.755 12 N -0.673 5.673 13 C 0.037 3.963 14 C -0.121 4.121 15 C -0.199 4.199 16 C 0.093 3.907 17 C -0.460 4.460 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.804 5.804 21 Si 0.910 3.090 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.136 4.136 26 C -0.132 4.132 27 C -0.221 4.221 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.130 0.870 41 H 0.397 0.603 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.279 0.721 45 H 0.123 0.877 46 H 0.090 0.910 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.316 18.962 8.886 22.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.011 4.011 6 O -0.215 6.215 7 C 0.115 3.885 8 C -0.287 4.287 9 C -0.069 4.069 10 C -0.224 4.224 11 C 0.142 3.858 12 N -0.293 5.293 13 C -0.057 4.057 14 C -0.142 4.142 15 C -0.219 4.219 16 C 0.090 3.910 17 C -0.490 4.490 18 H 0.094 0.906 19 C -0.144 4.144 20 N -0.431 5.431 21 Si 0.735 3.265 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.187 1.187 25 C -0.156 4.156 26 C -0.153 4.153 27 C -0.245 4.245 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.232 0.768 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.090 0.910 45 H 0.141 0.859 46 H 0.109 0.891 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.864 18.713 8.169 21.880 hybrid contribution -0.139 -0.256 0.484 0.565 sum -8.003 18.457 8.653 21.899 Atomic orbital electron populations 1.22475 0.87375 1.02583 1.00421 1.61917 1.07920 1.13744 1.42821 1.22387 1.01032 0.88513 1.00363 1.22205 1.01676 0.91699 0.91740 1.22765 0.97058 0.93437 0.87834 1.86119 1.67253 1.22548 1.45541 1.18587 0.93825 0.82513 0.93602 1.20872 1.07878 0.96031 1.03929 1.20640 0.96946 0.93727 0.95595 1.20980 1.00939 1.01589 0.98881 1.17434 0.89562 0.90634 0.88210 1.41667 1.63365 1.08999 1.15308 1.17220 1.11089 0.83066 0.94359 1.20194 1.03549 0.95545 0.94902 1.20642 1.10232 0.93462 0.97559 1.17632 0.89351 0.93252 0.90754 1.19480 1.32871 0.94808 1.01868 0.90582 1.25870 0.93442 1.00340 0.94747 1.69824 1.26938 1.37005 1.09311 0.86283 0.78294 0.82553 0.79376 1.19411 1.20394 1.18732 1.20977 1.02319 0.93100 0.99174 1.20215 1.05362 0.95244 0.94492 1.19861 1.08390 0.95322 1.00883 0.95748 0.91192 0.91060 0.91160 0.91245 0.95834 0.92829 0.89489 0.92046 0.91726 0.86650 0.86353 0.85257 0.76822 0.88571 0.88689 0.91041 0.85897 0.89145 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.33 60.07 0.56 0.71 16 2 N -0.54 -4.90 4.97 -251.25 -1.25 -6.15 16 3 C 0.03 0.18 9.57 60.07 0.57 0.75 16 4 C 0.05 0.45 5.34 -3.83 -0.02 0.43 16 5 C 0.07 0.63 4.79 37.16 0.18 0.81 16 6 O -0.30 -4.11 10.08 -19.41 -0.20 -4.31 16 7 C 0.16 2.40 6.68 -39.24 -0.26 2.14 16 8 C -0.27 -3.65 9.04 -39.38 -0.36 -4.01 16 9 C -0.05 -0.73 10.03 -39.63 -0.40 -1.13 16 10 C -0.20 -3.45 7.72 -39.34 -0.30 -3.75 16 11 C 0.24 4.28 5.89 -83.80 -0.49 3.78 16 12 N -0.67 -12.37 5.42 -8.32 -0.05 -12.42 16 13 C 0.04 0.80 6.06 -83.68 -0.51 0.29 16 14 C -0.12 -2.72 7.77 -39.77 -0.31 -3.03 16 15 C -0.20 -4.83 9.74 -39.27 -0.38 -5.21 16 16 C 0.09 2.44 5.56 -106.79 -0.59 1.85 16 17 C -0.46 -12.10 9.04 -37.89 -0.34 -12.44 16 18 H 0.08 1.93 7.87 -52.49 -0.41 1.51 16 19 C 0.07 1.80 5.23 -17.34 -0.09 1.71 16 20 N -0.80 -20.74 10.84 55.54 0.60 -20.13 16 21 Si 0.91 18.72 29.58 -169.99 -5.03 13.69 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.14 -3.46 8.61 -39.27 -0.34 -3.79 16 26 C -0.13 -3.02 9.87 -39.76 -0.39 -3.41 16 27 C -0.22 -3.59 9.90 -39.22 -0.39 -3.97 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.58 6.37 -51.93 -0.33 0.25 16 31 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 0.45 8.12 -51.92 -0.42 0.03 16 33 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.09 0.72 8.06 -51.93 -0.42 0.30 16 36 H 0.06 0.56 5.85 -51.93 -0.30 0.25 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.16 16 38 H 0.12 1.28 6.29 -52.48 -0.33 0.95 16 39 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 40 H 0.13 2.39 6.56 -52.49 -0.34 2.05 16 41 H 0.40 6.45 8.88 -40.82 -0.36 6.08 16 42 H 0.10 2.04 6.30 -52.48 -0.33 1.71 16 43 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 44 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 45 H 0.12 3.24 6.18 -52.49 -0.32 2.91 16 46 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 47 H 0.12 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -28.54 381.71 -10.94 -39.48 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -6.91 Total: 12.37 kcal Atomic # 6 Polarization: -24.42 SS G_CDS: -3.86 Total: -28.28 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.69 Total: -38.69 kcal Atomic # 8 Polarization: -4.11 SS G_CDS: -0.20 Total: -4.31 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.54 -10.94 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212807116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.444 kcal (2) G-P(sol) polarization free energy of solvation -28.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds