Wall clock time and date at job start Tue Mar 31 2020 14:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46905 * 110.99807 * 2 1 4 4 C 1.46896 * 110.99956 * 123.94975 * 2 1 3 5 5 C 1.53001 * 109.46932 * 66.04966 * 4 2 1 6 6 O 1.42901 * 109.47399 * 64.99449 * 5 4 2 7 7 C 1.35894 * 117.00266 * 179.97438 * 6 5 4 8 8 C 1.38829 * 120.01591 * 0.02562 * 7 6 5 9 9 C 1.38192 * 120.10973 * 179.97438 * 8 7 6 10 10 C 1.38141 * 120.12816 * 0.04559 * 9 8 7 11 11 C 1.38992 * 120.03226 * 359.97438 * 10 9 8 12 12 N 1.39590 * 120.05174 * 180.02562 * 11 10 9 13 13 C 1.38810 * 119.99738 * 328.29273 * 12 11 10 14 14 C 1.39600 * 119.84850 * 334.37376 * 13 12 11 15 15 C 1.36315 * 120.15865 * 179.72204 * 14 13 12 16 16 C 1.40906 * 119.83566 * 0.55155 * 15 14 13 17 17 C 1.41110 * 120.15142 * 179.70306 * 16 15 14 18 18 H 1.07998 * 119.99597 * 27.74980 * 17 16 15 19 19 C 1.39841 * 119.99914 * 207.75295 * 17 16 15 20 20 N 1.30913 * 120.00017 * 12.27558 * 19 17 16 21 21 Si 1.86804 * 119.99950 * 192.27233 * 19 17 16 22 22 H 1.48498 * 109.47022 * 89.99729 * 21 19 17 23 23 H 1.48499 * 109.47125 * 210.00255 * 21 19 17 24 24 H 1.48498 * 109.47052 * 330.00115 * 21 19 17 25 25 C 1.40899 * 119.69703 * 359.72327 * 16 15 14 26 26 C 1.36316 * 119.83797 * 359.97438 * 25 16 15 27 27 C 1.38561 * 120.01792 * 180.30208 * 7 6 5 28 28 H 1.09003 * 109.47006 * 296.04874 * 1 2 3 29 29 H 1.08997 * 109.47283 * 56.04493 * 1 2 3 30 30 H 1.09000 * 109.47010 * 176.04940 * 1 2 3 31 31 H 1.08994 * 109.46788 * 183.95979 * 3 2 1 32 32 H 1.09007 * 109.46772 * 303.95110 * 3 2 1 33 33 H 1.08994 * 109.47244 * 63.95604 * 3 2 1 34 34 H 1.08997 * 109.47771 * 306.04664 * 4 2 1 35 35 H 1.09007 * 109.46643 * 186.04127 * 4 2 1 36 36 H 1.08996 * 109.46916 * 304.99360 * 5 4 2 37 37 H 1.08998 * 109.47250 * 184.99726 * 5 4 2 38 38 H 1.08006 * 119.94806 * 0.02562 * 8 7 6 39 39 H 1.07990 * 119.94035 * 180.02562 * 9 8 7 40 40 H 1.07999 * 119.98585 * 179.97438 * 10 9 8 41 41 H 0.97005 * 119.99574 * 148.56974 * 12 11 10 42 42 H 1.08003 * 119.92022 * 0.02562 * 14 13 12 43 43 H 1.08001 * 120.08332 * 180.27950 * 15 14 13 44 44 H 0.97000 * 119.99788 * 179.97438 * 20 19 17 45 45 H 1.07996 * 120.08119 * 179.97438 * 25 16 15 46 46 H 1.08000 * 119.92122 * 179.97438 * 26 25 16 47 47 H 1.08000 * 120.06193 * 359.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.6315 -2.2425 0.9704 6 8 2.2956 -2.7695 -0.1800 7 6 2.0783 -4.0788 -0.4721 8 6 1.2419 -4.8404 0.3328 9 6 1.0191 -6.1718 0.0372 10 6 1.6285 -6.7500 -1.0594 11 6 2.4673 -5.9929 -1.8688 12 7 3.0828 -6.5766 -2.9774 13 6 3.4303 -7.9202 -2.9508 14 6 3.6758 -8.5504 -1.7296 15 6 4.0119 -9.8710 -1.6958 16 6 4.1227 -10.5972 -2.8982 17 6 4.4763 -11.9630 -2.8713 18 1 4.2360 -12.5661 -2.0083 19 6 5.1381 -12.5355 -3.9621 20 7 5.6422 -11.7703 -4.8971 21 14 5.3028 -14.3922 -4.0852 22 1 4.1366 -14.9450 -4.8197 23 1 6.5522 -14.7312 -4.8127 24 1 5.3505 -14.9764 -2.7208 25 6 3.8791 -9.9533 -4.1275 26 6 3.5378 -8.6337 -4.1460 27 6 2.6959 -4.6558 -1.5701 28 1 -0.3633 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0827 1.3433 -0.0710 32 1 1.5898 1.9163 -0.8525 33 1 1.7044 1.8724 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1755 36 1 0.5533 -2.3388 0.8434 37 1 1.9439 -2.7963 1.8557 38 1 0.7638 -4.3913 1.1909 39 1 0.3677 -6.7616 0.6649 40 1 1.4531 -7.7908 -1.2880 41 1 3.2714 -6.0422 -3.7647 42 1 3.5944 -7.9915 -0.8090 43 1 4.1971 -10.3585 -0.7500 44 1 6.1015 -12.1674 -5.6535 45 1 3.9627 -10.5038 -5.0529 46 1 3.3512 -8.1386 -5.0876 47 1 3.3500 -4.0659 -2.1949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212807116.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:55 Heat of formation + Delta-G solvation = 6.714291 kcal Electronic energy + Delta-G solvation = -26057.239934 eV Core-core repulsion = 22397.415367 eV Total energy + Delta-G solvation = -3659.824566 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.22712 -40.11809 -38.80730 -37.84569 -36.26136 -34.75624 -32.09760 -31.74124 -31.04455 -29.97372 -29.47782 -28.48358 -26.54662 -25.37810 -23.83459 -23.25720 -22.59245 -22.17511 -21.34291 -19.27914 -19.08898 -18.01078 -17.32612 -17.20702 -17.01238 -16.62302 -16.48332 -15.92184 -15.73548 -15.59152 -15.41727 -15.10467 -14.55869 -14.42614 -14.15617 -13.95543 -13.85164 -13.47764 -13.38068 -13.27045 -13.22615 -12.86524 -12.75774 -12.66386 -12.63355 -12.49328 -12.35089 -12.27409 -11.81851 -11.70834 -11.57624 -11.44273 -11.17019 -10.78850 -9.59320 -9.45518 -9.26144 -9.09609 -8.55824 -8.15519 -6.15716 0.44221 0.59733 1.07394 1.15186 1.40752 1.53178 1.56005 2.19396 2.25039 2.75790 2.80427 2.97718 3.01995 3.76219 3.89027 4.02379 4.10096 4.21163 4.30906 4.37846 4.38269 4.40240 4.43213 4.46805 4.48923 4.59999 4.65257 4.68990 4.74904 4.85481 4.91500 5.02835 5.03291 5.04863 5.15348 5.21363 5.35271 5.42261 5.44669 5.61347 5.66406 5.70864 5.83133 5.94499 6.06926 6.10052 6.11515 6.33856 6.59314 6.62463 6.78114 6.96696 6.99972 7.13100 8.42531 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.037466 B = 0.001932 C = 0.001888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.170030 B =14490.823502 C =14826.161090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.566 5.566 3 C 0.026 3.974 4 C 0.056 3.944 5 C 0.056 3.944 6 O -0.315 6.315 7 C 0.159 3.841 8 C -0.252 4.252 9 C -0.046 4.046 10 C -0.221 4.221 11 C 0.225 3.775 12 N -0.675 5.675 13 C 0.062 3.938 14 C -0.125 4.125 15 C -0.207 4.207 16 C 0.057 3.943 17 C -0.497 4.497 18 H 0.073 0.927 19 C 0.030 3.970 20 N -0.838 5.838 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.270 1.270 24 H -0.260 1.260 25 C -0.153 4.153 26 C -0.141 4.141 27 C -0.227 4.227 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.110 0.890 41 H 0.407 0.593 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.285 0.715 45 H 0.107 0.893 46 H 0.112 0.888 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 20.701 10.637 25.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.291 5.291 3 C -0.122 4.122 4 C -0.071 4.071 5 C -0.019 4.019 6 O -0.228 6.228 7 C 0.113 3.887 8 C -0.272 4.272 9 C -0.065 4.065 10 C -0.242 4.242 11 C 0.124 3.876 12 N -0.298 5.298 13 C -0.034 4.034 14 C -0.146 4.146 15 C -0.227 4.227 16 C 0.055 3.945 17 C -0.528 4.528 18 H 0.091 0.909 19 C -0.182 4.182 20 N -0.465 5.465 21 Si 0.804 3.196 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.184 1.184 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.250 4.250 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.166 0.834 39 H 0.163 0.837 40 H 0.128 0.872 41 H 0.243 0.757 42 H 0.128 0.872 43 H 0.118 0.882 44 H 0.095 0.905 45 H 0.125 0.875 46 H 0.130 0.870 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.990 20.518 9.948 24.511 hybrid contribution 0.080 -0.436 0.090 0.453 sum -8.911 20.082 10.039 24.155 Atomic orbital electron populations 1.22462 0.86749 1.02309 1.01210 1.61911 1.08756 1.14837 1.43618 1.22385 1.00851 0.87829 1.01099 1.22223 1.01625 0.90730 0.92544 1.23100 0.97420 0.94382 0.86958 1.86123 1.67782 1.21660 1.47231 1.18694 0.93461 0.83367 0.93190 1.21228 1.06448 0.95440 1.04095 1.20949 0.96407 0.94356 0.94774 1.20976 1.02178 1.00848 1.00244 1.17551 0.90435 0.91341 0.88247 1.41541 1.64117 1.07697 1.16399 1.17262 1.08155 0.84348 0.93627 1.20311 1.03375 0.94998 0.95879 1.20800 1.10317 0.94287 0.97297 1.17942 0.90853 0.94024 0.91689 1.19690 1.34783 0.95372 1.02924 0.90885 1.26691 0.92542 1.05029 0.93981 1.69888 1.27713 1.38952 1.09990 0.85191 0.78534 0.76462 0.79409 1.18782 1.19505 1.18386 1.20922 1.03717 0.94222 0.98432 1.20405 1.05200 0.94579 0.96012 1.19948 1.08655 0.94838 1.01576 0.94384 0.91101 0.91723 0.91406 0.91024 0.94632 0.90470 0.89900 0.91102 0.90161 0.83391 0.83673 0.87208 0.75683 0.87189 0.88183 0.90482 0.87518 0.86993 0.85622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.33 127.69 1.19 1.46 16 2 N -0.57 -8.99 4.97 -948.83 -4.71 -13.71 16 3 C 0.03 0.32 9.57 127.69 1.22 1.54 16 4 C 0.06 0.77 5.34 86.30 0.46 1.23 16 5 C 0.06 0.91 4.79 71.98 0.35 1.25 16 6 O -0.31 -7.80 10.08 -92.36 -0.93 -8.73 16 7 C 0.16 4.37 6.68 22.49 0.15 4.52 16 8 C -0.25 -6.02 9.04 22.40 0.20 -5.82 16 9 C -0.05 -1.22 10.03 22.24 0.22 -0.99 16 10 C -0.22 -7.28 7.72 22.43 0.17 -7.11 16 11 C 0.23 7.66 5.89 38.24 0.23 7.88 16 12 N -0.68 -24.48 5.42 -180.24 -0.98 -25.46 16 13 C 0.06 2.68 6.06 38.70 0.23 2.91 16 14 C -0.12 -5.65 7.77 22.15 0.17 -5.48 16 15 C -0.21 -10.35 9.74 22.47 0.22 -10.13 16 16 C 0.06 3.15 5.56 -21.27 -0.12 3.03 16 17 C -0.50 -27.24 9.04 23.36 0.21 -27.03 16 18 H 0.07 3.86 7.87 -2.91 -0.02 3.84 16 19 C 0.03 1.55 5.23 85.22 0.45 1.99 16 20 N -0.84 -44.67 10.84 21.81 0.24 -44.43 16 21 Si 0.98 39.12 29.58 68.60 2.03 41.15 16 22 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 23 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 25 C -0.15 -8.10 8.61 22.47 0.19 -7.90 16 26 C -0.14 -6.54 9.87 22.15 0.22 -6.32 16 27 C -0.23 -7.04 9.90 22.50 0.22 -6.82 16 28 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.07 0.87 8.12 -2.39 -0.02 0.85 16 30 H 0.06 0.90 6.37 -2.39 -0.02 0.88 16 31 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 32 H 0.07 0.81 8.12 -2.38 -0.02 0.79 16 33 H 0.04 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.69 8.12 -2.39 -0.02 0.68 16 35 H 0.08 1.18 8.06 -2.38 -0.02 1.16 16 36 H 0.07 1.02 5.85 -2.39 -0.01 1.01 16 37 H 0.08 1.05 7.66 -2.39 -0.02 1.04 16 38 H 0.15 2.56 6.29 -2.91 -0.02 2.54 16 39 H 0.15 3.00 8.06 -2.92 -0.02 2.98 16 40 H 0.11 4.05 6.56 -2.91 -0.02 4.03 16 41 H 0.41 12.96 8.88 -92.70 -0.82 12.14 16 42 H 0.11 4.63 6.30 -2.91 -0.02 4.61 16 43 H 0.10 4.74 8.06 -2.91 -0.02 4.72 16 44 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 45 H 0.11 5.92 6.18 -2.91 -0.02 5.90 16 46 H 0.11 4.59 8.06 -2.91 -0.02 4.56 16 47 H 0.13 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -63.16 381.71 1.79 -61.37 By element: Atomic # 1 Polarization: 41.44 SS G_CDS: 0.15 Total: 41.60 kcal Atomic # 6 Polarization: -57.79 SS G_CDS: 5.99 Total: -51.79 kcal Atomic # 7 Polarization: -78.14 SS G_CDS: -5.45 Total: -83.59 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.93 Total: -8.73 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -63.16 1.79 -61.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212807116.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.085 kcal (2) G-P(sol) polarization free energy of solvation -63.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds