Wall clock time and date at job start Tue Mar 31 2020 14:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46901 * 110.99408 * 2 1 4 4 C 1.46901 * 110.99845 * 123.95112 * 2 1 3 5 5 C 1.53003 * 109.46927 * 76.28220 * 4 2 1 6 6 O 1.42900 * 109.47220 * 65.56864 * 5 4 2 7 7 C 1.35894 * 116.99905 * 179.97438 * 6 5 4 8 8 C 1.38834 * 120.01401 * 0.02562 * 7 6 5 9 9 C 1.38198 * 120.10026 * 179.97438 * 8 7 6 10 10 C 1.38135 * 120.13650 * 359.74774 * 9 8 7 11 11 C 1.38989 * 120.02712 * 0.50273 * 10 9 8 12 12 N 1.39583 * 120.05055 * 179.76932 * 11 10 9 13 13 C 1.38691 * 120.00293 * 5.35426 * 12 11 10 14 14 C 1.38812 * 120.29471 * 259.60356 * 13 12 11 15 15 C 1.38120 * 120.01519 * 180.29392 * 14 13 12 16 16 C 1.38922 * 120.63609 * 359.67420 * 15 14 13 17 17 C 1.36433 * 120.60924 * 0.02562 * 16 15 14 18 18 C 1.40736 * 119.94776 * 359.97438 * 17 16 15 19 19 C 1.41018 * 120.30914 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00047 * 156.76185 * 19 18 17 21 21 C 1.39915 * 119.99700 * 336.76707 * 19 18 17 22 22 N 1.30889 * 119.99719 * 331.85240 * 21 19 18 23 23 Si 1.86796 * 119.99666 * 151.85877 * 21 19 18 24 24 H 1.48503 * 109.46948 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46910 * 299.99120 * 23 21 19 26 26 H 1.48491 * 109.47433 * 59.99777 * 23 21 19 27 27 C 1.38552 * 120.01789 * 180.02562 * 7 6 5 28 28 H 1.08996 * 109.47314 * 296.04131 * 1 2 3 29 29 H 1.08991 * 109.47456 * 56.04795 * 1 2 3 30 30 H 1.09008 * 109.46677 * 176.04919 * 1 2 3 31 31 H 1.09000 * 109.46518 * 188.23555 * 3 2 1 32 32 H 1.08997 * 109.47475 * 308.23302 * 3 2 1 33 33 H 1.08997 * 109.47474 * 68.23544 * 3 2 1 34 34 H 1.08996 * 109.47409 * 316.27780 * 4 2 1 35 35 H 1.08999 * 109.46539 * 196.27462 * 4 2 1 36 36 H 1.08995 * 109.46623 * 305.56771 * 5 4 2 37 37 H 1.09002 * 109.47019 * 185.57093 * 5 4 2 38 38 H 1.07997 * 119.95320 * 359.95513 * 8 7 6 39 39 H 1.07999 * 119.92708 * 180.02562 * 9 8 7 40 40 H 1.07998 * 119.98739 * 180.25679 * 10 9 8 41 41 H 0.97005 * 120.00132 * 185.35243 * 12 11 10 42 42 H 1.07994 * 119.99392 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.67911 * 179.69356 * 15 14 13 44 44 H 1.08008 * 119.69615 * 180.02562 * 16 15 14 45 45 H 1.07996 * 120.02539 * 180.02562 * 17 16 15 46 46 H 0.96992 * 120.00274 * 353.56923 * 22 21 19 47 47 H 1.07997 * 120.06565 * 0.04264 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.8589 -2.2628 0.8516 6 8 2.6994 -2.6162 -0.2487 7 6 2.6962 -3.9194 -0.6338 8 6 1.8991 -4.8390 0.0343 9 6 1.8940 -6.1647 -0.3562 10 6 2.6779 -6.5785 -1.4157 11 6 3.4819 -5.6636 -2.0851 12 7 4.2778 -6.0822 -3.1526 13 6 4.1846 -7.3854 -3.6178 14 6 5.1297 -8.3313 -3.2450 15 6 5.0347 -9.6260 -3.7166 16 6 3.9949 -9.9980 -4.5594 17 6 3.0485 -9.0907 -4.9373 18 6 3.1210 -7.7646 -4.4716 19 6 2.1466 -6.8208 -4.8569 20 1 1.9672 -5.9494 -4.2448 21 6 1.4123 -7.0135 -6.0321 22 7 1.9338 -7.6857 -7.0268 23 14 -0.3122 -6.3113 -6.1816 24 1 -0.8712 -6.6512 -7.5147 25 1 -1.1755 -6.8890 -5.1204 26 1 -0.2606 -4.8352 -6.0287 27 6 3.4885 -4.3310 -1.6934 28 1 -0.3634 0.4511 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0751 1.3462 -0.1472 32 1 1.5318 1.9386 -0.8072 33 1 1.7698 1.8473 0.9544 34 1 1.4324 -0.5149 2.0365 35 1 3.0466 -0.5190 1.2865 36 1 0.8222 -2.4924 0.6053 37 1 2.1570 -2.8299 1.7334 38 1 1.2822 -4.5180 0.8606 39 1 1.2726 -6.8776 0.1652 40 1 2.6689 -7.6143 -1.7215 41 1 4.8962 -5.4616 -3.5692 42 1 5.9423 -8.0536 -2.5903 43 1 5.7758 -10.3563 -3.4271 44 1 3.9350 -11.0147 -4.9189 45 1 2.2440 -9.3902 -5.5925 46 1 2.8603 -7.9698 -6.9873 47 1 4.1097 -3.6171 -2.2137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212807962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:00 Heat of formation + Delta-G solvation = 14.439576 kcal Electronic energy + Delta-G solvation = -27032.502144 eV Core-core repulsion = 23373.012571 eV Total energy + Delta-G solvation = -3659.489573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.76595 -38.59499 -37.61195 -36.60878 -34.22923 -33.83200 -30.90752 -29.80904 -29.36428 -28.56128 -27.80463 -27.31881 -25.03635 -24.45393 -22.12748 -22.05045 -21.01047 -20.90066 -19.92843 -18.05588 -17.69055 -16.37161 -16.34166 -15.75317 -15.41259 -15.09573 -14.97894 -14.74101 -14.66390 -14.38364 -14.21226 -13.88350 -13.05531 -12.94796 -12.78127 -12.59589 -12.47415 -12.40461 -12.32559 -12.04287 -11.91995 -11.77794 -11.46865 -11.31333 -11.05133 -10.90673 -10.84069 -10.62925 -10.41307 -10.35449 -10.07191 -9.72850 -9.27333 -8.94857 -8.55255 -7.78044 -7.68840 -7.66557 -7.24170 -6.66490 -4.47496 2.08755 2.24051 2.66317 2.76807 3.16060 3.27123 3.36485 3.42523 3.70153 3.98563 4.42926 4.49600 4.53664 4.77820 4.83138 4.99699 5.10457 5.18062 5.24769 5.32420 5.39219 5.40082 5.43766 5.59515 5.62282 5.66044 5.73917 6.00763 6.01446 6.07497 6.15591 6.21019 6.44201 6.49789 6.76071 6.78925 6.86591 6.88451 6.96203 7.06249 7.15490 7.22045 7.32130 7.49684 7.70527 7.77175 7.89084 7.92380 8.07986 8.16292 8.42142 8.51828 8.78472 8.94507 9.94936 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003331 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.590219 B = 8404.307772 C = 9793.171790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.540 5.540 3 C 0.026 3.974 4 C 0.055 3.945 5 C 0.069 3.931 6 O -0.304 6.304 7 C 0.168 3.832 8 C -0.283 4.283 9 C -0.043 4.043 10 C -0.208 4.208 11 C 0.272 3.728 12 N -0.658 5.658 13 C -0.008 4.008 14 C -0.070 4.070 15 C -0.259 4.259 16 C -0.079 4.079 17 C -0.216 4.216 18 C 0.101 3.899 19 C -0.496 4.496 20 H 0.082 0.918 21 C 0.042 3.958 22 N -0.786 5.786 23 Si 1.058 2.942 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.274 1.274 27 C -0.242 4.242 28 H 0.023 0.977 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.022 0.978 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.123 0.877 41 H 0.392 0.608 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.106 0.894 46 H 0.300 0.700 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.984 11.487 12.799 17.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.264 5.264 3 C -0.122 4.122 4 C -0.073 4.073 5 C -0.007 4.007 6 O -0.217 6.217 7 C 0.122 3.878 8 C -0.304 4.304 9 C -0.062 4.062 10 C -0.231 4.231 11 C 0.166 3.834 12 N -0.277 5.277 13 C -0.101 4.101 14 C -0.090 4.090 15 C -0.279 4.279 16 C -0.098 4.098 17 C -0.235 4.235 18 C 0.096 3.904 19 C -0.523 4.523 20 H 0.100 0.900 21 C -0.182 4.182 22 N -0.408 5.408 23 Si 0.881 3.119 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.199 1.199 27 C -0.266 4.266 28 H 0.042 0.958 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.041 0.959 34 H 0.073 0.927 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.130 0.870 39 H 0.132 0.868 40 H 0.141 0.859 41 H 0.227 0.773 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.025 11.284 11.154 16.153 hybrid contribution 1.122 0.347 1.691 2.059 sum -1.903 11.631 12.846 17.433 Atomic orbital electron populations 1.22476 0.87297 1.02592 1.00338 1.61883 1.07882 1.13755 1.42914 1.22388 1.01174 0.88577 1.00043 1.22205 1.01348 0.92275 0.91475 1.22682 0.94641 0.94690 0.88715 1.86083 1.62917 1.23675 1.49017 1.18504 0.94005 0.82181 0.93117 1.20731 1.08575 0.94577 1.06503 1.20557 0.96048 0.94596 0.94971 1.20625 1.02719 1.00050 0.99696 1.17629 0.88771 0.91016 0.85975 1.41202 1.42555 1.11087 1.32839 1.17198 0.99724 0.84118 1.09095 1.20816 0.97507 0.93099 0.97584 1.20134 1.02943 0.95970 1.08855 1.20395 0.94966 0.97472 0.96965 1.20855 1.01323 0.93410 1.07954 1.17818 0.90367 0.92078 0.90107 1.20504 1.16021 1.07941 1.07834 0.90027 1.27048 1.05564 0.93716 0.91850 1.70485 1.17405 1.23058 1.29852 0.83731 0.73642 0.77143 0.77345 1.19840 1.19782 1.19920 1.19554 1.09337 0.94605 1.03093 0.95810 0.91177 0.91137 0.91153 0.91331 0.95910 0.92694 0.89787 0.92181 0.92003 0.87028 0.86829 0.85892 0.77325 0.89133 0.89226 0.89290 0.87576 0.88659 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.40 60.07 0.56 0.76 16 2 N -0.54 -5.83 4.90 -251.26 -1.23 -7.06 16 3 C 0.03 0.23 9.51 60.07 0.57 0.80 16 4 C 0.05 0.53 5.38 -3.82 -0.02 0.51 16 5 C 0.07 0.80 4.94 37.16 0.18 0.99 16 6 O -0.30 -4.81 10.09 -19.41 -0.20 -5.01 16 7 C 0.17 2.94 6.68 -39.24 -0.26 2.68 16 8 C -0.28 -4.66 9.04 -39.38 -0.36 -5.02 16 9 C -0.04 -0.75 10.03 -39.63 -0.40 -1.15 16 10 C -0.21 -4.25 9.27 -39.34 -0.36 -4.62 16 11 C 0.27 5.55 5.64 -83.81 -0.47 5.08 16 12 N -0.66 -13.74 4.76 -8.06 -0.04 -13.78 16 13 C -0.01 -0.18 4.43 -83.28 -0.37 -0.55 16 14 C -0.07 -1.54 9.96 -39.41 -0.39 -1.93 16 15 C -0.26 -5.60 10.03 -39.37 -0.40 -6.00 16 16 C -0.08 -1.79 9.96 -39.98 -0.40 -2.18 16 17 C -0.22 -5.33 7.96 -39.29 -0.31 -5.65 16 18 C 0.10 2.54 5.15 -106.63 -0.55 1.99 16 19 C -0.50 -12.79 8.54 -37.90 -0.32 -13.12 16 20 H 0.08 2.16 6.87 -52.49 -0.36 1.80 16 21 C 0.04 1.04 4.88 -17.33 -0.08 0.95 16 22 N -0.79 -20.32 12.26 55.55 0.68 -19.64 16 23 Si 1.06 21.84 30.01 -169.99 -5.10 16.74 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 C -0.24 -4.58 9.84 -39.22 -0.39 -4.96 16 28 H 0.02 0.18 8.08 -51.93 -0.42 -0.24 16 29 H 0.07 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.07 0.68 6.82 -51.92 -0.35 0.33 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.54 8.05 -51.93 -0.42 0.13 16 33 H 0.02 0.16 8.13 -51.93 -0.42 -0.26 16 34 H 0.06 0.42 7.95 -51.93 -0.41 0.01 16 35 H 0.08 0.79 7.93 -51.93 -0.41 0.38 16 36 H 0.06 0.69 6.31 -51.93 -0.33 0.37 16 37 H 0.06 0.63 7.66 -51.93 -0.40 0.24 16 38 H 0.11 1.53 6.29 -52.49 -0.33 1.20 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.12 2.74 6.89 -52.49 -0.36 2.38 16 41 H 0.39 7.48 8.84 -40.82 -0.36 7.12 16 42 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 43 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 44 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 45 H 0.11 2.71 6.43 -52.49 -0.34 2.38 16 46 H 0.30 7.93 6.86 -40.82 -0.28 7.65 16 47 H 0.12 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -28.00 383.61 -10.82 -38.82 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -6.95 Total: 15.56 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -3.77 Total: -31.41 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: -0.59 Total: -40.48 kcal Atomic # 8 Polarization: -4.81 SS G_CDS: -0.20 Total: -5.01 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.10 Total: 16.74 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.00 -10.82 -38.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212807962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.256 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds