Wall clock time and date at job start Tue Mar 31 2020 14:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46901 * 110.99408 * 2 1 4 4 C 1.46901 * 110.99845 * 123.95112 * 2 1 3 5 5 C 1.53003 * 109.46927 * 76.28220 * 4 2 1 6 6 O 1.42900 * 109.47220 * 65.56864 * 5 4 2 7 7 C 1.35894 * 116.99905 * 179.97438 * 6 5 4 8 8 C 1.38834 * 120.01401 * 0.02562 * 7 6 5 9 9 C 1.38198 * 120.10026 * 179.97438 * 8 7 6 10 10 C 1.38135 * 120.13650 * 359.74774 * 9 8 7 11 11 C 1.38989 * 120.02712 * 0.50273 * 10 9 8 12 12 N 1.39583 * 120.05055 * 179.76932 * 11 10 9 13 13 C 1.38691 * 120.00293 * 5.35426 * 12 11 10 14 14 C 1.38812 * 120.29471 * 259.60356 * 13 12 11 15 15 C 1.38120 * 120.01519 * 180.29392 * 14 13 12 16 16 C 1.38922 * 120.63609 * 359.67420 * 15 14 13 17 17 C 1.36433 * 120.60924 * 0.02562 * 16 15 14 18 18 C 1.40736 * 119.94776 * 359.97438 * 17 16 15 19 19 C 1.41018 * 120.30914 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00047 * 156.76185 * 19 18 17 21 21 C 1.39915 * 119.99700 * 336.76707 * 19 18 17 22 22 N 1.30889 * 119.99719 * 331.85240 * 21 19 18 23 23 Si 1.86796 * 119.99666 * 151.85877 * 21 19 18 24 24 H 1.48503 * 109.46948 * 179.97438 * 23 21 19 25 25 H 1.48500 * 109.46910 * 299.99120 * 23 21 19 26 26 H 1.48491 * 109.47433 * 59.99777 * 23 21 19 27 27 C 1.38552 * 120.01789 * 180.02562 * 7 6 5 28 28 H 1.08996 * 109.47314 * 296.04131 * 1 2 3 29 29 H 1.08991 * 109.47456 * 56.04795 * 1 2 3 30 30 H 1.09008 * 109.46677 * 176.04919 * 1 2 3 31 31 H 1.09000 * 109.46518 * 188.23555 * 3 2 1 32 32 H 1.08997 * 109.47475 * 308.23302 * 3 2 1 33 33 H 1.08997 * 109.47474 * 68.23544 * 3 2 1 34 34 H 1.08996 * 109.47409 * 316.27780 * 4 2 1 35 35 H 1.08999 * 109.46539 * 196.27462 * 4 2 1 36 36 H 1.08995 * 109.46623 * 305.56771 * 5 4 2 37 37 H 1.09002 * 109.47019 * 185.57093 * 5 4 2 38 38 H 1.07997 * 119.95320 * 359.95513 * 8 7 6 39 39 H 1.07999 * 119.92708 * 180.02562 * 9 8 7 40 40 H 1.07998 * 119.98739 * 180.25679 * 10 9 8 41 41 H 0.97005 * 120.00132 * 185.35243 * 12 11 10 42 42 H 1.07994 * 119.99392 * 359.97438 * 14 13 12 43 43 H 1.07998 * 119.67911 * 179.69356 * 15 14 13 44 44 H 1.08008 * 119.69615 * 180.02562 * 16 15 14 45 45 H 1.07996 * 120.02539 * 180.02562 * 17 16 15 46 46 H 0.96992 * 120.00274 * 353.56923 * 22 21 19 47 47 H 1.07997 * 120.06565 * 0.04264 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 1.8589 -2.2628 0.8516 6 8 2.6994 -2.6162 -0.2487 7 6 2.6962 -3.9194 -0.6338 8 6 1.8991 -4.8390 0.0343 9 6 1.8940 -6.1647 -0.3562 10 6 2.6779 -6.5785 -1.4157 11 6 3.4819 -5.6636 -2.0851 12 7 4.2778 -6.0822 -3.1526 13 6 4.1846 -7.3854 -3.6178 14 6 5.1297 -8.3313 -3.2450 15 6 5.0347 -9.6260 -3.7166 16 6 3.9949 -9.9980 -4.5594 17 6 3.0485 -9.0907 -4.9373 18 6 3.1210 -7.7646 -4.4716 19 6 2.1466 -6.8208 -4.8569 20 1 1.9672 -5.9494 -4.2448 21 6 1.4123 -7.0135 -6.0321 22 7 1.9338 -7.6857 -7.0268 23 14 -0.3122 -6.3113 -6.1816 24 1 -0.8712 -6.6512 -7.5147 25 1 -1.1755 -6.8890 -5.1204 26 1 -0.2606 -4.8352 -6.0287 27 6 3.4885 -4.3310 -1.6934 28 1 -0.3634 0.4511 0.9233 29 1 -0.3634 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0751 1.3462 -0.1472 32 1 1.5318 1.9386 -0.8072 33 1 1.7698 1.8473 0.9544 34 1 1.4324 -0.5149 2.0365 35 1 3.0466 -0.5190 1.2865 36 1 0.8222 -2.4924 0.6053 37 1 2.1570 -2.8299 1.7334 38 1 1.2822 -4.5180 0.8606 39 1 1.2726 -6.8776 0.1652 40 1 2.6689 -7.6143 -1.7215 41 1 4.8962 -5.4616 -3.5692 42 1 5.9423 -8.0536 -2.5903 43 1 5.7758 -10.3563 -3.4271 44 1 3.9350 -11.0147 -4.9189 45 1 2.2440 -9.3902 -5.5925 46 1 2.8603 -7.9698 -6.9873 47 1 4.1097 -3.6171 -2.2137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212807962.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:59 Heat of formation + Delta-G solvation = -0.041089 kcal Electronic energy + Delta-G solvation = -27033.130073 eV Core-core repulsion = 23373.012571 eV Total energy + Delta-G solvation = -3660.117502 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11831 -40.12842 -38.77875 -37.79174 -35.93604 -35.53117 -32.07341 -31.25987 -31.15194 -29.88064 -28.94550 -28.47114 -26.84499 -25.37562 -23.59400 -23.28982 -22.84296 -22.12083 -21.33636 -19.82582 -19.11234 -17.93982 -17.24951 -16.98621 -16.79326 -16.52460 -16.26392 -16.20293 -15.87533 -15.63996 -15.58060 -15.29774 -14.54349 -14.41338 -14.22670 -13.90844 -13.84897 -13.69782 -13.40857 -13.27672 -13.09501 -12.75827 -12.69283 -12.64161 -12.56284 -12.40125 -12.21633 -12.05436 -11.95059 -11.70531 -11.58108 -11.44998 -10.95839 -10.68301 -9.55583 -9.52408 -9.25486 -9.16713 -9.12095 -8.22654 -6.40474 0.63955 0.75561 0.89778 0.94474 1.46457 1.60490 1.75009 2.26424 2.28324 2.64119 2.93107 3.00447 3.07310 3.52764 3.94038 4.05794 4.12305 4.24341 4.35359 4.35953 4.40898 4.42785 4.43656 4.46722 4.50855 4.62371 4.65134 4.73002 4.74989 4.79838 4.84991 5.00413 5.02628 5.04073 5.04842 5.20526 5.38325 5.48175 5.50235 5.63996 5.71703 5.80026 5.86637 5.91429 6.01883 6.07946 6.11323 6.21463 6.35721 6.63704 6.67932 6.83784 6.94634 7.20072 8.00127 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003331 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.590219 B = 8404.307772 C = 9793.171790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.571 5.571 3 C 0.028 3.972 4 C 0.058 3.942 5 C 0.059 3.941 6 O -0.315 6.315 7 C 0.170 3.830 8 C -0.272 4.272 9 C -0.040 4.040 10 C -0.234 4.234 11 C 0.257 3.743 12 N -0.664 5.664 13 C 0.000 4.000 14 C -0.080 4.080 15 C -0.248 4.248 16 C -0.084 4.084 17 C -0.236 4.236 18 C 0.079 3.921 19 C -0.523 4.523 20 H 0.066 0.934 21 C 0.010 3.990 22 N -0.807 5.807 23 Si 1.102 2.898 24 H -0.267 1.267 25 H -0.265 1.265 26 H -0.265 1.265 27 C -0.255 4.255 28 H 0.040 0.960 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.397 0.603 42 H 0.112 0.888 43 H 0.122 0.878 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.286 0.714 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.461 12.411 15.224 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.296 5.296 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.016 4.016 6 O -0.229 6.229 7 C 0.123 3.877 8 C -0.293 4.293 9 C -0.059 4.059 10 C -0.257 4.257 11 C 0.152 3.848 12 N -0.286 5.286 13 C -0.094 4.094 14 C -0.099 4.099 15 C -0.267 4.267 16 C -0.102 4.102 17 C -0.256 4.256 18 C 0.074 3.926 19 C -0.551 4.551 20 H 0.084 0.916 21 C -0.208 4.208 22 N -0.430 5.430 23 Si 0.921 3.079 24 H -0.191 1.191 25 H -0.190 1.190 26 H -0.190 1.190 27 C -0.278 4.278 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.081 0.919 37 H 0.099 0.901 38 H 0.164 0.836 39 H 0.158 0.842 40 H 0.114 0.886 41 H 0.233 0.767 42 H 0.130 0.870 43 H 0.140 0.860 44 H 0.132 0.868 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.494 12.225 13.608 18.624 hybrid contribution 1.381 0.098 1.132 1.788 sum -2.113 12.324 14.740 19.329 Atomic orbital electron populations 1.22462 0.86642 1.02255 1.01235 1.61864 1.08798 1.14997 1.43896 1.22380 1.00839 0.87813 1.00980 1.22229 1.01839 0.90761 0.92161 1.23057 0.94164 0.96396 0.87988 1.86090 1.63804 1.22471 1.50522 1.18603 0.93287 0.83285 0.92481 1.21067 1.07856 0.93668 1.06676 1.20861 0.95270 0.95796 0.93936 1.20565 1.04678 0.98870 1.01575 1.17733 0.89194 0.91746 0.86125 1.41151 1.43327 1.10571 1.33527 1.17370 0.98983 0.85283 1.07778 1.21127 0.97856 0.93142 0.97824 1.20554 1.02657 0.96433 1.07072 1.20688 0.94481 0.98312 0.96765 1.20849 1.02017 0.93987 1.08779 1.18120 0.91140 0.92387 0.90913 1.20461 1.17960 1.08179 1.08498 0.91594 1.28184 1.08181 0.93267 0.91201 1.70584 1.16674 1.25285 1.30408 0.83181 0.70060 0.76999 0.77699 1.19129 1.18987 1.18990 1.19662 1.10114 0.94061 1.04003 0.94110 0.91225 0.91931 0.91586 0.91131 0.94375 0.90013 0.89772 0.91860 0.90057 0.83601 0.84233 0.88601 0.76749 0.86988 0.86025 0.86778 0.89318 0.90229 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.40 127.69 1.20 1.56 16 2 N -0.57 -11.15 4.90 -948.83 -4.65 -15.80 16 3 C 0.03 0.42 9.51 127.69 1.21 1.64 16 4 C 0.06 0.96 5.38 86.30 0.46 1.42 16 5 C 0.06 1.21 4.94 71.98 0.36 1.56 16 6 O -0.32 -9.43 10.09 -92.36 -0.93 -10.36 16 7 C 0.17 5.73 6.68 22.49 0.15 5.88 16 8 C -0.27 -8.30 9.04 22.40 0.20 -8.10 16 9 C -0.04 -1.35 10.03 22.24 0.22 -1.12 16 10 C -0.23 -9.66 9.27 22.43 0.21 -9.46 16 11 C 0.26 10.65 5.64 38.25 0.22 10.87 16 12 N -0.66 -28.52 4.76 -179.41 -0.85 -29.37 16 13 C 0.00 -0.02 4.43 39.01 0.17 0.15 16 14 C -0.08 -3.43 9.96 22.38 0.22 -3.21 16 15 C -0.25 -10.30 10.03 22.41 0.22 -10.07 16 16 C -0.08 -3.74 9.96 22.01 0.22 -3.52 16 17 C -0.24 -12.04 7.96 22.46 0.18 -11.86 16 18 C 0.08 4.11 5.15 -21.17 -0.11 4.00 16 19 C -0.52 -28.15 8.54 23.36 0.20 -27.95 16 20 H 0.07 3.66 6.87 -2.91 -0.02 3.64 16 21 C 0.01 0.49 4.88 85.24 0.42 0.91 16 22 N -0.81 -43.39 12.26 21.83 0.27 -43.12 16 23 Si 1.10 44.97 30.01 68.60 2.06 47.03 16 24 H -0.27 -10.49 7.11 99.48 0.71 -9.78 16 25 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 26 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 27 C -0.25 -9.65 9.84 22.50 0.22 -9.42 16 28 H 0.04 0.51 8.08 -2.39 -0.02 0.49 16 29 H 0.07 1.11 8.07 -2.39 -0.02 1.09 16 30 H 0.06 1.09 6.82 -2.38 -0.02 1.08 16 31 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.07 1.02 8.05 -2.39 -0.02 1.00 16 33 H 0.04 0.46 8.13 -2.39 -0.02 0.44 16 34 H 0.08 0.94 7.95 -2.39 -0.02 0.92 16 35 H 0.08 1.39 7.93 -2.39 -0.02 1.37 16 36 H 0.06 1.27 6.31 -2.39 -0.02 1.25 16 37 H 0.08 1.35 7.66 -2.39 -0.02 1.34 16 38 H 0.15 3.41 6.29 -2.91 -0.02 3.39 16 39 H 0.14 3.89 8.06 -2.91 -0.02 3.86 16 40 H 0.10 4.43 6.89 -2.91 -0.02 4.41 16 41 H 0.40 15.66 8.84 -92.70 -0.82 14.84 16 42 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 44 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 45 H 0.09 4.75 6.43 -2.91 -0.02 4.74 16 46 H 0.29 15.88 6.86 -92.71 -0.64 15.24 16 47 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -62.16 383.61 2.16 -60.00 By element: Atomic # 1 Polarization: 48.06 SS G_CDS: 0.29 Total: 48.35 kcal Atomic # 6 Polarization: -62.71 SS G_CDS: 5.98 Total: -56.73 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -5.24 Total: -88.29 kcal Atomic # 8 Polarization: -9.43 SS G_CDS: -0.93 Total: -10.36 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.06 Total: 47.03 kcal Total: -62.16 2.16 -60.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212807962.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.961 kcal (2) G-P(sol) polarization free energy of solvation -62.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds