Wall clock time and date at job start Tue Mar 31 2020 14:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46898 * 110.99817 * 2 1 4 4 C 1.46906 * 110.99692 * 123.95012 * 2 1 3 5 5 C 1.53001 * 109.47097 * 66.04902 * 4 2 1 6 6 O 1.42901 * 109.47297 * 64.99395 * 5 4 2 7 7 C 1.35898 * 117.00430 * 179.97438 * 6 5 4 8 8 C 1.38821 * 120.01462 * 0.03050 * 7 6 5 9 9 C 1.38177 * 120.09512 * 179.97438 * 8 7 6 10 10 C 1.38144 * 120.13101 * 359.97438 * 9 8 7 11 11 C 1.38950 * 120.03436 * 359.97438 * 10 9 8 12 12 N 1.39706 * 120.04577 * 179.97438 * 11 10 9 13 13 C 1.39721 * 120.00446 * 331.80607 * 12 11 10 14 14 C 1.39345 * 119.95162 * 324.06078 * 13 12 11 15 15 C 1.38477 * 120.42410 * 179.76210 * 14 13 12 16 16 C 1.37692 * 120.32376 * 0.51155 * 15 14 13 17 17 C 1.40758 * 119.89416 * 359.74889 * 16 15 14 18 18 C 1.41413 * 120.20745 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00627 * 204.26383 * 18 17 16 20 20 C 1.39932 * 119.99746 * 24.26435 * 18 17 16 21 21 N 1.30833 * 120.00384 * 19.32709 * 20 18 17 22 22 Si 1.86805 * 119.99686 * 199.32985 * 20 18 17 23 23 H 1.48497 * 109.47361 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47053 * 119.99969 * 22 20 18 25 25 H 1.48504 * 109.46868 * 239.99467 * 22 20 18 26 26 C 1.38300 * 119.95370 * 144.33486 * 13 12 11 27 27 C 1.38568 * 120.01979 * 180.02562 * 7 6 5 28 28 H 1.08996 * 109.46780 * 296.04647 * 1 2 3 29 29 H 1.08996 * 109.46522 * 56.04552 * 1 2 3 30 30 H 1.09002 * 109.46989 * 176.04863 * 1 2 3 31 31 H 1.09004 * 109.46597 * 183.94828 * 3 2 1 32 32 H 1.08996 * 109.47237 * 303.94748 * 3 2 1 33 33 H 1.09000 * 109.47201 * 63.95342 * 3 2 1 34 34 H 1.08994 * 109.47192 * 306.04716 * 4 2 1 35 35 H 1.08999 * 109.47203 * 186.04705 * 4 2 1 36 36 H 1.08998 * 109.46764 * 305.00053 * 5 4 2 37 37 H 1.08997 * 109.47230 * 184.99978 * 5 4 2 38 38 H 1.08004 * 119.95202 * 359.97055 * 8 7 6 39 39 H 1.08003 * 119.93345 * 179.97438 * 9 8 7 40 40 H 1.08000 * 119.98304 * 180.02562 * 10 9 8 41 41 H 0.97009 * 119.99392 * 151.80650 * 12 11 10 42 42 H 1.07997 * 119.79169 * 0.02562 * 14 13 12 43 43 H 1.07998 * 119.84178 * 180.23851 * 15 14 13 44 44 H 1.07998 * 120.05800 * 179.76590 * 16 15 14 45 45 H 0.97000 * 120.00052 * 180.02562 * 21 20 18 46 46 H 1.07995 * 120.16040 * 359.95781 * 26 13 12 47 47 H 1.07994 * 120.06378 * 0.30313 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 1.6315 -2.2426 0.9705 6 8 2.2956 -2.7696 -0.1799 7 6 2.0783 -4.0789 -0.4720 8 6 1.2418 -4.8404 0.3327 9 6 1.0193 -6.1717 0.0370 10 6 1.6278 -6.7493 -1.0605 11 6 2.4652 -5.9918 -1.8703 12 7 3.0811 -6.5759 -2.9800 13 6 3.3654 -7.9439 -2.9819 14 6 3.7601 -8.5740 -1.8034 15 6 4.0395 -9.9302 -1.7930 16 6 3.9404 -10.6693 -2.9505 17 6 3.5481 -10.0455 -4.1498 18 6 3.4446 -10.7981 -5.3425 19 1 3.5343 -10.3073 -6.3003 20 6 3.2259 -12.1789 -5.2817 21 7 2.7472 -12.7180 -4.1900 22 14 3.6177 -13.2524 -6.7595 23 1 4.1430 -12.4061 -7.8608 24 1 4.6382 -14.2626 -6.3808 25 1 2.3826 -13.9420 -7.2116 26 6 3.2601 -8.6694 -4.1545 27 6 2.6914 -4.6545 -1.5733 28 1 -0.3633 0.4512 0.9233 29 1 -0.3632 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9163 -0.8525 33 1 1.7044 1.8723 0.9233 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6611 1.1758 36 1 0.5532 -2.3388 0.8433 37 1 1.9438 -2.7963 1.8559 38 1 0.7644 -4.3917 1.1913 39 1 0.3684 -6.7618 0.6651 40 1 1.4518 -7.7899 -1.2898 41 1 3.3113 -6.0315 -3.7492 42 1 3.8445 -8.0019 -0.8913 43 1 4.3409 -10.4098 -0.8735 44 1 4.1630 -11.7261 -2.9383 45 1 2.5960 -13.6753 -4.1478 46 1 2.9579 -8.1814 -5.0693 47 1 3.3462 -4.0648 -2.1976 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212809150.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:03 Heat of formation + Delta-G solvation = 18.468635 kcal Electronic energy + Delta-G solvation = -26077.247774 eV Core-core repulsion = 22417.932914 eV Total energy + Delta-G solvation = -3659.314860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.04663 -38.68003 -37.64313 -36.71876 -34.67878 -33.15379 -31.09842 -29.94692 -29.80117 -28.76603 -27.93393 -27.09930 -25.26531 -24.70509 -22.41542 -22.20089 -21.06327 -20.70211 -20.09791 -18.15300 -17.32517 -16.59957 -16.10559 -15.92619 -15.60528 -15.32409 -15.23642 -14.92029 -14.79033 -14.61611 -14.26062 -13.62719 -13.21500 -13.08082 -12.91698 -12.78376 -12.67418 -12.49857 -12.25261 -12.08131 -11.95974 -11.67484 -11.64386 -11.32762 -11.30217 -11.15043 -10.92020 -10.75324 -10.62744 -10.44959 -9.98653 -9.71189 -9.40176 -9.13532 -8.68282 -8.16775 -7.79363 -7.50102 -6.80728 -6.45720 -4.37769 1.72544 1.84134 2.77345 3.03788 3.07299 3.12392 3.18201 3.22424 3.57978 3.91664 4.09962 4.18473 4.59376 4.62073 4.70140 4.84711 4.99349 5.03057 5.07499 5.17879 5.21932 5.27357 5.34014 5.46734 5.54199 5.61709 5.67444 5.71361 5.74737 5.87034 6.11628 6.30355 6.48178 6.58605 6.62767 6.64997 6.69393 6.80111 6.92685 6.92815 7.01929 7.12748 7.24318 7.31798 7.63481 7.74465 7.80879 8.03046 8.10341 8.37534 8.38739 8.65204 8.88466 8.96648 10.16363 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.031807 B = 0.001982 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.090209 B =14124.271864 C =14471.900842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.025 3.975 4 C 0.055 3.945 5 C 0.065 3.935 6 O -0.301 6.301 7 C 0.159 3.841 8 C -0.264 4.264 9 C -0.050 4.050 10 C -0.196 4.196 11 C 0.247 3.753 12 N -0.686 5.686 13 C 0.181 3.819 14 C -0.263 4.263 15 C -0.086 4.086 16 C -0.180 4.180 17 C 0.128 3.872 18 C -0.463 4.463 19 H 0.078 0.922 20 C 0.078 3.922 21 N -0.789 5.789 22 Si 0.906 3.094 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.254 4.254 27 C -0.220 4.220 28 H 0.024 0.976 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.023 0.977 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.116 0.884 39 H 0.119 0.881 40 H 0.131 0.869 41 H 0.401 0.599 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.116 0.884 45 H 0.280 0.720 46 H 0.094 0.906 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.638 19.149 9.978 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.264 5.264 3 C -0.123 4.123 4 C -0.073 4.073 5 C -0.011 4.011 6 O -0.214 6.214 7 C 0.114 3.886 8 C -0.284 4.284 9 C -0.069 4.069 10 C -0.218 4.218 11 C 0.145 3.855 12 N -0.308 5.308 13 C 0.087 3.913 14 C -0.284 4.284 15 C -0.105 4.105 16 C -0.199 4.199 17 C 0.125 3.875 18 C -0.492 4.492 19 H 0.096 0.904 20 C -0.141 4.141 21 N -0.414 5.414 22 Si 0.730 3.270 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.200 1.200 26 C -0.276 4.276 27 C -0.243 4.243 28 H 0.043 0.957 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.042 0.958 34 H 0.072 0.928 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.134 0.866 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.236 0.764 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.134 0.866 45 H 0.091 0.909 46 H 0.112 0.888 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.435 18.712 9.579 21.300 hybrid contribution -0.302 -0.037 0.048 0.308 sum -3.737 18.675 9.626 21.340 Atomic orbital electron populations 1.22476 0.87350 1.02606 1.00430 1.61918 1.07942 1.13743 1.42801 1.22386 1.01015 0.88518 1.00370 1.22203 1.01658 0.91690 0.91755 1.22770 0.97091 0.93444 0.87809 1.86118 1.67252 1.22500 1.45573 1.18570 0.93927 0.82560 0.93588 1.20892 1.07607 0.96038 1.03863 1.20654 0.96925 0.93723 0.95572 1.20982 1.00747 1.01598 0.98493 1.17446 0.89628 0.90649 0.87811 1.42179 1.64199 1.07561 1.16860 1.17387 0.97719 0.81086 0.95084 1.20177 1.16593 0.95362 0.96290 1.20507 0.99677 0.93234 0.97060 1.21276 1.06222 0.99937 0.92508 1.17393 0.86797 0.90176 0.93114 1.19578 1.43811 0.91952 0.93866 0.90388 1.25907 0.92117 0.98826 0.97215 1.69854 1.30079 1.13411 1.28049 0.86303 0.78975 0.79834 0.81866 1.18379 1.19666 1.20022 1.20728 1.15576 0.95314 0.95974 1.19817 1.08531 0.95125 1.00804 0.95742 0.91176 0.91047 0.91172 0.91236 0.95839 0.92825 0.89502 0.92019 0.91724 0.86576 0.86255 0.85104 0.76434 0.89077 0.89194 0.86586 0.90897 0.88795 0.85744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.33 60.07 0.56 0.71 16 2 N -0.54 -4.91 4.97 -251.26 -1.25 -6.16 16 3 C 0.03 0.18 9.57 60.06 0.57 0.75 16 4 C 0.05 0.45 5.34 -3.82 -0.02 0.43 16 5 C 0.06 0.63 4.80 37.16 0.18 0.81 16 6 O -0.30 -4.10 10.08 -19.42 -0.20 -4.30 16 7 C 0.16 2.39 6.68 -39.24 -0.26 2.13 16 8 C -0.26 -3.66 9.04 -39.39 -0.36 -4.01 16 9 C -0.05 -0.74 10.03 -39.64 -0.40 -1.14 16 10 C -0.20 -3.48 8.14 -39.35 -0.32 -3.80 16 11 C 0.25 4.40 5.94 -83.78 -0.50 3.90 16 12 N -0.69 -12.90 5.43 -8.47 -0.05 -12.94 16 13 C 0.18 4.02 5.73 -83.83 -0.48 3.54 16 14 C -0.26 -5.92 8.02 -39.08 -0.31 -6.23 16 15 C -0.09 -2.01 10.02 -39.69 -0.40 -2.41 16 16 C -0.18 -4.63 8.70 -38.83 -0.34 -4.97 16 17 C 0.13 3.39 5.57 -106.85 -0.60 2.79 16 18 C -0.46 -12.16 9.04 -37.74 -0.34 -12.50 16 19 H 0.08 1.98 7.92 -52.49 -0.42 1.56 16 20 C 0.08 1.93 5.11 -17.34 -0.09 1.84 16 21 N -0.79 -20.22 11.03 55.55 0.61 -19.60 16 22 Si 0.91 18.49 29.60 -169.99 -5.03 13.46 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 26 C -0.25 -6.15 9.71 -38.67 -0.38 -6.53 16 27 C -0.22 -3.57 9.89 -39.23 -0.39 -3.96 16 28 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.07 0.59 6.37 -51.93 -0.33 0.26 16 31 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 32 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 34 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 35 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 36 H 0.06 0.56 5.85 -51.93 -0.30 0.26 16 37 H 0.06 0.55 7.66 -51.93 -0.40 0.15 16 38 H 0.12 1.30 6.29 -52.48 -0.33 0.97 16 39 H 0.12 1.50 8.06 -52.48 -0.42 1.08 16 40 H 0.13 2.58 6.70 -52.49 -0.35 2.22 16 41 H 0.40 6.64 8.92 -40.82 -0.36 6.27 16 42 H 0.09 1.96 7.00 -52.49 -0.37 1.59 16 43 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.12 3.08 6.19 -52.49 -0.33 2.76 16 45 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 46 H 0.09 2.17 8.06 -52.49 -0.42 1.74 16 47 H 0.12 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -28.70 383.34 -10.95 -39.65 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -6.96 Total: 12.77 kcal Atomic # 6 Polarization: -24.79 SS G_CDS: -3.86 Total: -28.65 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.68 Total: -38.70 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.20 Total: -4.30 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -28.70 -10.95 -39.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212809150.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.119 kcal (2) G-P(sol) polarization free energy of solvation -28.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds