Wall clock time and date at job start Tue Mar 31 2020 14:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31303 * 119.79627 * 2 1 4 4 C 1.33036 * 121.71396 * 179.97438 * 3 2 1 5 5 C 1.47900 * 119.45615 * 179.97438 * 4 3 2 6 6 C 1.41135 * 126.37671 * 180.02562 * 5 4 3 7 7 N 1.30525 * 108.10295 * 179.69431 * 6 5 4 8 8 N 1.39956 * 108.86148 * 0.44361 * 7 6 5 9 9 C 1.46496 * 125.80270 * 179.80905 * 8 7 6 10 10 C 1.52997 * 109.47284 * 304.69242 * 9 8 7 11 11 N 1.46900 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.48567 * 110.99857 * 189.99871 * 11 10 9 13 13 C 1.54373 * 104.69914 * 200.89824 * 12 11 10 14 14 C 1.54572 * 104.91421 * 23.88699 * 13 12 11 15 15 C 1.48555 * 111.00372 * 74.58423 * 11 10 9 16 16 C 1.34613 * 108.39457 * 359.54470 * 8 7 6 17 17 C 1.39966 * 121.08408 * 0.25504 * 4 3 2 18 18 C 1.36545 * 119.46847 * 359.46153 * 17 4 3 19 19 C 1.40903 * 119.79899 * 179.97438 * 2 1 3 20 20 C 1.41062 * 120.54887 * 359.97438 * 19 2 1 21 21 H 1.08006 * 120.00377 * 329.66213 * 20 19 2 22 22 C 1.39953 * 120.00049 * 149.66161 * 20 19 2 23 23 N 1.30841 * 119.99963 * 162.36361 * 22 20 19 24 24 Si 1.86800 * 120.00143 * 342.36241 * 22 20 19 25 25 H 1.48500 * 109.46972 * 95.35974 * 24 22 20 26 26 H 1.48495 * 109.47231 * 215.36249 * 24 22 20 27 27 H 1.48499 * 109.46803 * 335.36178 * 24 22 20 28 28 H 1.08997 * 109.46584 * 90.00079 * 1 2 3 29 29 H 1.08996 * 109.47093 * 209.99827 * 1 2 3 30 30 H 1.08991 * 109.47074 * 330.00256 * 1 2 3 31 31 H 1.07994 * 125.94657 * 359.97438 * 6 5 4 32 32 H 1.08996 * 109.47149 * 184.68944 * 9 8 7 33 33 H 1.09008 * 109.47358 * 64.69250 * 9 8 7 34 34 H 1.09005 * 109.47229 * 59.99977 * 10 9 8 35 35 H 1.08994 * 109.47313 * 299.99992 * 10 9 8 36 36 H 1.09000 * 110.41378 * 319.74382 * 12 11 10 37 37 H 1.09000 * 110.40806 * 82.06337 * 12 11 10 38 38 H 1.09002 * 110.32346 * 142.80711 * 13 12 11 39 39 H 1.08993 * 110.32975 * 265.01788 * 13 12 11 40 40 H 1.08996 * 110.29479 * 241.08260 * 14 13 12 41 41 H 1.08993 * 110.32220 * 118.88808 * 14 13 12 42 42 H 1.09000 * 110.40765 * 277.82046 * 15 11 10 43 43 H 1.09003 * 110.41122 * 40.13963 * 15 11 10 44 44 H 1.08002 * 126.30636 * 180.28094 * 16 8 7 45 45 H 1.07997 * 120.26447 * 179.72238 * 17 4 3 46 46 H 1.07998 * 120.78637 * 180.26125 * 18 17 4 47 47 H 0.97002 * 119.99593 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1595 1.1394 0.0000 4 6 3.4891 1.1840 0.0005 5 6 4.1730 2.4954 -0.0001 6 6 5.5675 2.7122 -0.0002 7 7 5.7777 4.0004 -0.0074 8 7 4.5434 4.6603 -0.0019 9 6 4.3478 6.1121 -0.0032 10 6 5.0995 6.7290 1.1780 11 7 4.9038 8.1849 1.1763 12 6 5.8046 8.8443 2.1566 13 6 5.1450 10.2116 2.4367 14 6 3.6507 10.0096 2.0966 15 6 3.5378 8.5391 1.6404 16 6 3.5666 3.7340 -0.0013 17 6 4.2515 0.0101 -0.0043 18 6 3.6204 -1.2007 0.0016 19 6 2.2073 -1.2227 0.0005 20 6 1.5094 -2.4486 0.0016 21 1 0.5409 -2.5183 0.4745 22 6 2.0720 -3.5747 -0.6100 23 7 1.6183 -4.7686 -0.3262 24 14 3.4707 -3.3731 -1.8317 25 1 4.7684 -3.5529 -1.1324 26 1 3.3413 -4.3914 -2.9047 27 1 3.4143 -2.0147 -2.4289 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 6.3283 1.9457 0.0006 32 1 3.2847 6.3355 0.0861 33 1 4.7298 6.5295 -0.9349 34 1 6.1627 6.5056 1.0887 35 1 4.7176 6.3118 2.1096 36 1 5.8651 8.2566 3.0726 37 1 6.7973 8.9818 1.7280 38 1 5.2630 10.4810 3.4863 39 1 5.5792 10.9797 1.7968 40 1 3.3525 10.6800 1.2906 41 1 3.0351 10.1804 2.9797 42 1 2.8231 8.4486 0.8225 43 1 3.2425 7.9022 2.4743 44 1 2.5037 3.9256 -0.0018 45 1 5.3302 0.0617 -0.0083 46 1 4.1877 -2.1197 0.0023 47 1 2.0080 -5.5490 -0.7505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222465794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:09 Heat of formation + Delta-G solvation = 100.256774 kcal Electronic energy + Delta-G solvation = -26252.721581 eV Core-core repulsion = 22629.246072 eV Total energy + Delta-G solvation = -3623.475509 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75106 -39.21961 -38.59354 -34.64011 -34.00958 -32.27458 -31.54090 -31.46639 -29.38609 -29.23932 -27.75877 -27.11938 -24.72697 -23.52998 -22.09598 -21.46484 -21.26049 -20.87351 -20.07289 -19.40358 -17.52841 -17.00916 -16.35061 -16.15820 -15.63153 -15.25928 -14.93655 -14.58063 -14.39371 -14.18617 -13.84446 -13.45917 -13.38278 -13.10567 -12.91498 -12.76638 -12.47697 -12.36337 -12.04340 -11.94886 -11.84282 -11.73771 -11.60003 -11.56564 -11.36158 -11.22991 -11.08560 -10.89376 -10.81072 -10.46270 -10.22277 -9.83055 -9.54624 -9.12960 -8.92206 -8.62112 -8.37215 -8.16361 -7.15299 -7.09640 -4.53637 1.96921 2.40108 2.63210 2.64618 2.98699 3.11269 3.21003 3.49428 3.68174 3.86732 4.22622 4.27293 4.54901 4.56594 4.58525 4.82890 4.88396 5.05061 5.15091 5.19840 5.24551 5.28520 5.36511 5.37345 5.42798 5.48579 5.50699 5.59380 5.60341 5.70808 5.77470 5.95559 6.02675 6.07490 6.20518 6.40305 6.42237 6.55432 6.59152 6.60538 6.68010 6.77464 6.91733 6.95908 7.27101 7.29247 7.51749 7.58687 7.78892 8.05706 8.17848 8.41403 8.60142 9.43235 9.90020 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.002194 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.189186 B =12756.947392 C =13440.876641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.031 3.969 3 N -0.454 5.454 4 C 0.055 3.945 5 C -0.142 4.142 6 C 0.053 3.947 7 N -0.308 5.308 8 N -0.377 5.377 9 C 0.147 3.853 10 C 0.035 3.965 11 N -0.510 5.510 12 C 0.033 3.967 13 C -0.125 4.125 14 C -0.124 4.124 15 C 0.025 3.975 16 C 0.057 3.943 17 C -0.111 4.111 18 C -0.207 4.207 19 C 0.046 3.954 20 C -0.425 4.425 21 H 0.100 0.900 22 C 0.083 3.917 23 N -0.797 5.797 24 Si 0.909 3.091 25 H -0.268 1.268 26 H -0.287 1.287 27 H -0.244 1.244 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.049 0.951 31 H 0.180 0.820 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.083 0.917 43 H 0.047 0.953 44 H 0.175 0.825 45 H 0.103 0.897 46 H 0.109 0.891 47 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.793 21.458 2.847 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.115 4.115 3 N -0.162 5.162 4 C -0.080 4.080 5 C -0.153 4.153 6 C -0.134 4.134 7 N -0.129 5.129 8 N -0.160 5.160 9 C 0.025 3.975 10 C -0.094 4.094 11 N -0.235 5.235 12 C -0.095 4.095 13 C -0.163 4.163 14 C -0.162 4.162 15 C -0.103 4.103 16 C -0.089 4.089 17 C -0.131 4.131 18 C -0.232 4.232 19 C 0.041 3.959 20 C -0.453 4.453 21 H 0.117 0.883 22 C -0.138 4.138 23 N -0.420 5.420 24 Si 0.736 3.264 25 H -0.194 1.194 26 H -0.215 1.215 27 H -0.168 1.168 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.197 0.803 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.065 0.935 44 H 0.192 0.808 45 H 0.121 0.879 46 H 0.126 0.874 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.265 23.186 2.281 23.885 hybrid contribution 0.380 -2.096 0.331 2.156 sum 5.645 21.089 2.612 21.987 Atomic orbital electron populations 1.20286 0.90586 1.01119 1.01000 1.21010 0.95311 0.87585 1.07560 1.66809 1.08608 1.30330 1.10503 1.18031 0.88470 0.89348 1.12139 1.18920 0.91603 0.91803 1.13009 1.23862 0.95956 0.93231 1.00353 1.76954 1.03508 1.06798 1.25675 1.48154 1.04110 1.05605 1.58163 1.21410 1.01108 0.75062 0.99961 1.22490 1.02352 0.87362 0.97182 1.65284 1.03826 1.08160 1.46207 1.23097 0.97500 0.94649 0.94221 1.22343 0.95423 0.97080 1.01422 1.22339 0.96479 0.96139 1.01290 1.23243 0.91624 0.96103 0.99326 1.22788 0.94923 0.88219 1.02962 1.21089 0.98655 0.93038 1.00319 1.21014 0.94758 0.96576 1.10805 1.18454 0.91861 0.94276 0.91284 1.19478 1.05416 0.90959 1.29469 0.88253 1.26216 0.96884 0.94223 0.96469 1.69686 1.38113 0.99296 1.34902 0.86320 0.80255 0.79976 0.79895 1.19400 1.21463 1.16762 0.92654 0.91345 0.93184 0.80341 0.89097 0.89328 0.89218 0.93835 0.93678 0.89877 0.91289 0.90885 0.90881 0.91290 0.89854 0.93510 0.80802 0.87881 0.87367 0.90143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.44 9.79 36.01 0.35 -1.09 16 2 C 0.03 0.73 6.86 -81.81 -0.56 0.17 16 3 N -0.45 -10.41 9.96 -5.39 -0.05 -10.46 16 4 C 0.05 1.20 6.76 -82.74 -0.56 0.64 16 5 C -0.14 -2.69 6.10 -104.96 -0.64 -3.33 16 6 C 0.05 0.90 11.40 -17.01 -0.19 0.70 16 7 N -0.31 -5.10 12.35 30.84 0.38 -4.72 16 8 N -0.38 -5.63 3.66 -60.76 -0.22 -5.85 16 9 C 0.15 1.62 6.61 -4.05 -0.03 1.60 16 10 C 0.04 0.37 5.01 -3.83 -0.02 0.35 16 11 N -0.51 -4.60 5.34 -229.98 -1.23 -5.83 16 12 C 0.03 0.26 6.45 -2.18 -0.01 0.24 16 13 C -0.12 -0.78 7.02 -25.19 -0.18 -0.96 16 14 C -0.12 -0.79 7.01 -25.18 -0.18 -0.96 16 15 C 0.02 0.19 5.92 -2.18 -0.01 0.18 16 16 C 0.06 0.95 11.22 -16.45 -0.18 0.77 16 17 C -0.11 -2.41 9.54 -39.55 -0.38 -2.79 16 18 C -0.21 -4.88 7.21 -39.02 -0.28 -5.16 16 19 C 0.05 1.15 5.10 -106.64 -0.54 0.60 16 20 C -0.42 -10.83 8.91 -37.87 -0.34 -11.16 16 21 H 0.10 2.59 6.55 -52.48 -0.34 2.25 16 22 C 0.08 2.06 5.42 -17.33 -0.09 1.97 16 23 N -0.80 -20.13 13.93 55.55 0.77 -19.36 16 24 Si 0.91 20.05 24.53 -169.99 -4.17 15.88 16 25 H -0.27 -5.71 6.71 56.52 0.38 -5.33 16 26 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.24 -5.64 6.85 56.52 0.39 -5.26 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.07 1.35 6.30 -51.93 -0.33 1.03 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.18 2.59 7.31 -52.49 -0.38 2.21 16 32 H 0.09 0.84 7.39 -51.93 -0.38 0.46 16 33 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 34 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 35 H 0.04 0.49 7.77 -51.93 -0.40 0.09 16 36 H 0.04 0.36 8.00 -51.93 -0.42 -0.06 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.08 0.59 7.85 -51.93 -0.41 0.19 16 43 H 0.05 0.38 7.75 -51.93 -0.40 -0.03 16 44 H 0.17 2.65 8.06 -52.49 -0.42 2.22 16 45 H 0.10 1.91 7.00 -52.49 -0.37 1.54 16 46 H 0.11 2.50 4.84 -52.49 -0.25 2.25 16 47 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -28.64 377.06 -9.77 -38.41 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -7.08 Total: 4.49 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.85 Total: -18.24 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.35 Total: -46.22 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.17 Total: 15.88 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -28.64 -9.77 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222465794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.663 kcal (2) G-P(sol) polarization free energy of solvation -28.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds