Wall clock time and date at job start Tue Mar 31 2020 14:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31303 * 119.79627 * 2 1 4 4 C 1.33036 * 121.71396 * 179.97438 * 3 2 1 5 5 C 1.47900 * 119.45615 * 179.97438 * 4 3 2 6 6 C 1.41135 * 126.37671 * 180.02562 * 5 4 3 7 7 N 1.30525 * 108.10295 * 179.69431 * 6 5 4 8 8 N 1.39956 * 108.86148 * 0.44361 * 7 6 5 9 9 C 1.46496 * 125.80270 * 179.80905 * 8 7 6 10 10 C 1.52997 * 109.47284 * 304.69242 * 9 8 7 11 11 N 1.46900 * 109.47016 * 179.97438 * 10 9 8 12 12 C 1.48567 * 110.99857 * 189.99871 * 11 10 9 13 13 C 1.54373 * 104.69914 * 200.89824 * 12 11 10 14 14 C 1.54572 * 104.91421 * 23.88699 * 13 12 11 15 15 C 1.48555 * 111.00372 * 74.58423 * 11 10 9 16 16 C 1.34613 * 108.39457 * 359.54470 * 8 7 6 17 17 C 1.39966 * 121.08408 * 0.25504 * 4 3 2 18 18 C 1.36545 * 119.46847 * 359.46153 * 17 4 3 19 19 C 1.40903 * 119.79899 * 179.97438 * 2 1 3 20 20 C 1.41062 * 120.54887 * 359.97438 * 19 2 1 21 21 H 1.08006 * 120.00377 * 329.66213 * 20 19 2 22 22 C 1.39953 * 120.00049 * 149.66161 * 20 19 2 23 23 N 1.30841 * 119.99963 * 162.36361 * 22 20 19 24 24 Si 1.86800 * 120.00143 * 342.36241 * 22 20 19 25 25 H 1.48500 * 109.46972 * 95.35974 * 24 22 20 26 26 H 1.48495 * 109.47231 * 215.36249 * 24 22 20 27 27 H 1.48499 * 109.46803 * 335.36178 * 24 22 20 28 28 H 1.08997 * 109.46584 * 90.00079 * 1 2 3 29 29 H 1.08996 * 109.47093 * 209.99827 * 1 2 3 30 30 H 1.08991 * 109.47074 * 330.00256 * 1 2 3 31 31 H 1.07994 * 125.94657 * 359.97438 * 6 5 4 32 32 H 1.08996 * 109.47149 * 184.68944 * 9 8 7 33 33 H 1.09008 * 109.47358 * 64.69250 * 9 8 7 34 34 H 1.09005 * 109.47229 * 59.99977 * 10 9 8 35 35 H 1.08994 * 109.47313 * 299.99992 * 10 9 8 36 36 H 1.09000 * 110.41378 * 319.74382 * 12 11 10 37 37 H 1.09000 * 110.40806 * 82.06337 * 12 11 10 38 38 H 1.09002 * 110.32346 * 142.80711 * 13 12 11 39 39 H 1.08993 * 110.32975 * 265.01788 * 13 12 11 40 40 H 1.08996 * 110.29479 * 241.08260 * 14 13 12 41 41 H 1.08993 * 110.32220 * 118.88808 * 14 13 12 42 42 H 1.09000 * 110.40765 * 277.82046 * 15 11 10 43 43 H 1.09003 * 110.41122 * 40.13963 * 15 11 10 44 44 H 1.08002 * 126.30636 * 180.28094 * 16 8 7 45 45 H 1.07997 * 120.26447 * 179.72238 * 17 4 3 46 46 H 1.07998 * 120.78637 * 180.26125 * 18 17 4 47 47 H 0.97002 * 119.99593 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1595 1.1394 0.0000 4 6 3.4891 1.1840 0.0005 5 6 4.1730 2.4954 -0.0001 6 6 5.5675 2.7122 -0.0002 7 7 5.7777 4.0004 -0.0074 8 7 4.5434 4.6603 -0.0019 9 6 4.3478 6.1121 -0.0032 10 6 5.0995 6.7290 1.1780 11 7 4.9038 8.1849 1.1763 12 6 5.8046 8.8443 2.1566 13 6 5.1450 10.2116 2.4367 14 6 3.6507 10.0096 2.0966 15 6 3.5378 8.5391 1.6404 16 6 3.5666 3.7340 -0.0013 17 6 4.2515 0.0101 -0.0043 18 6 3.6204 -1.2007 0.0016 19 6 2.2073 -1.2227 0.0005 20 6 1.5094 -2.4486 0.0016 21 1 0.5409 -2.5183 0.4745 22 6 2.0720 -3.5747 -0.6100 23 7 1.6183 -4.7686 -0.3262 24 14 3.4707 -3.3731 -1.8317 25 1 4.7684 -3.5529 -1.1324 26 1 3.3413 -4.3914 -2.9047 27 1 3.4143 -2.0147 -2.4289 28 1 -0.3632 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5137 31 1 6.3283 1.9457 0.0006 32 1 3.2847 6.3355 0.0861 33 1 4.7298 6.5295 -0.9349 34 1 6.1627 6.5056 1.0887 35 1 4.7176 6.3118 2.1096 36 1 5.8651 8.2566 3.0726 37 1 6.7973 8.9818 1.7280 38 1 5.2630 10.4810 3.4863 39 1 5.5792 10.9797 1.7968 40 1 3.3525 10.6800 1.2906 41 1 3.0351 10.1804 2.9797 42 1 2.8231 8.4486 0.8225 43 1 3.2425 7.9022 2.4743 44 1 2.5037 3.9256 -0.0018 45 1 5.3302 0.0617 -0.0083 46 1 4.1877 -2.1197 0.0023 47 1 2.0080 -5.5490 -0.7505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222465794.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:08 Heat of formation + Delta-G solvation = 83.321892 kcal Electronic energy + Delta-G solvation = -26253.455933 eV Core-core repulsion = 22629.246072 eV Total energy + Delta-G solvation = -3624.209860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.05607 -40.38037 -39.83714 -36.02196 -35.39542 -33.79698 -33.31629 -32.51818 -30.74898 -29.85195 -28.96241 -28.69264 -26.28830 -24.52700 -23.77606 -22.76104 -21.98752 -21.75735 -21.42529 -20.74705 -19.35496 -18.24025 -17.45448 -16.95744 -16.88586 -16.68490 -16.36488 -15.77482 -15.47372 -15.35840 -15.15322 -14.99789 -14.71288 -14.51898 -13.98405 -13.95712 -13.67600 -13.63439 -13.40141 -13.32918 -13.13113 -13.00556 -12.75078 -12.64070 -12.56309 -12.36390 -12.15003 -12.10614 -11.96833 -11.72187 -11.48388 -11.37490 -11.35655 -10.37490 -10.31080 -10.05011 -9.93670 -9.62925 -8.93515 -8.77008 -6.41210 0.36730 0.80947 1.02651 1.24501 1.36005 1.45844 1.52368 1.94028 2.09461 2.75884 2.94542 3.45554 3.58174 3.68748 3.74888 3.80608 3.88990 4.04528 4.09941 4.16720 4.24040 4.31283 4.32310 4.40471 4.47313 4.59364 4.60659 4.65049 4.74181 4.78398 4.84560 4.86189 4.95530 4.99324 5.01062 5.03597 5.06996 5.08758 5.19229 5.22855 5.25895 5.48632 5.61680 5.72416 5.78114 5.78949 5.86522 5.99956 6.13036 6.30067 6.58952 6.73788 6.75704 7.64136 8.12351 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.028414 B = 0.002194 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.189186 B =12756.947392 C =13440.876641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.017 3.983 3 N -0.465 5.465 4 C 0.071 3.929 5 C -0.184 4.184 6 C 0.056 3.944 7 N -0.317 5.317 8 N -0.368 5.368 9 C 0.142 3.858 10 C 0.047 3.953 11 N -0.516 5.516 12 C 0.029 3.971 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.021 3.979 16 C 0.076 3.924 17 C -0.123 4.123 18 C -0.213 4.213 19 C 0.023 3.977 20 C -0.454 4.454 21 H 0.077 0.923 22 C 0.052 3.948 23 N -0.835 5.835 24 Si 0.956 3.044 25 H -0.255 1.255 26 H -0.275 1.275 27 H -0.262 1.262 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.200 0.800 32 H 0.114 0.886 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.190 0.810 45 H 0.137 0.863 46 H 0.111 0.889 47 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.980 24.401 2.555 25.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.127 4.127 3 N -0.174 5.174 4 C -0.065 4.065 5 C -0.196 4.196 6 C -0.130 4.130 7 N -0.139 5.139 8 N -0.150 5.150 9 C 0.021 3.979 10 C -0.082 4.082 11 N -0.240 5.240 12 C -0.099 4.099 13 C -0.160 4.160 14 C -0.161 4.161 15 C -0.107 4.107 16 C -0.072 4.072 17 C -0.143 4.143 18 C -0.238 4.238 19 C 0.019 3.981 20 C -0.484 4.484 21 H 0.095 0.905 22 C -0.165 4.165 23 N -0.460 5.460 24 Si 0.780 3.220 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.186 1.186 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.217 0.783 32 H 0.132 0.868 33 H 0.114 0.886 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.060 0.940 44 H 0.207 0.793 45 H 0.154 0.846 46 H 0.128 0.872 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.449 26.148 1.998 27.006 hybrid contribution 0.083 -2.618 0.476 2.662 sum 6.532 23.530 2.473 24.544 Atomic orbital electron populations 1.20276 0.88762 1.01687 1.01734 1.21499 0.96892 0.87473 1.06843 1.66933 1.09211 1.29851 1.11393 1.18622 0.88402 0.90929 1.08575 1.18922 0.92681 0.91273 1.16772 1.24169 0.95615 0.93815 0.99420 1.76964 1.04295 1.06721 1.25900 1.48471 1.03312 1.06843 1.56337 1.21727 1.02786 0.72800 1.00579 1.22283 1.01225 0.88419 0.96310 1.65307 1.04874 1.06962 1.46877 1.23171 0.97572 0.95388 0.93763 1.22353 0.95244 0.96152 1.02239 1.22356 0.96625 0.95201 1.01897 1.23330 0.90932 0.96953 0.99458 1.23028 0.95796 0.88001 1.00423 1.21447 1.00548 0.92246 1.00036 1.21206 0.94518 0.97585 1.10487 1.18635 0.92681 0.94485 0.92346 1.19391 1.05212 0.92125 1.31653 0.90529 1.26737 0.98558 0.93856 0.97327 1.69701 1.39877 0.99881 1.36530 0.85613 0.78798 0.79024 0.78542 1.18001 1.20140 1.18595 0.91759 0.91996 0.91289 0.78340 0.86812 0.88601 0.90590 0.94838 0.94107 0.89834 0.90251 0.90415 0.90360 0.90334 0.89162 0.93966 0.79334 0.84556 0.87167 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.69 9.79 71.24 0.70 -1.99 16 2 C 0.02 0.80 6.86 43.29 0.30 1.09 16 3 N -0.46 -20.82 9.96 -170.97 -1.70 -22.52 16 4 C 0.07 2.99 6.76 41.94 0.28 3.27 16 5 C -0.18 -6.57 6.10 -20.09 -0.12 -6.69 16 6 C 0.06 1.76 11.40 85.60 0.98 2.74 16 7 N -0.32 -9.71 12.35 -56.34 -0.70 -10.41 16 8 N -0.37 -9.98 3.66 -346.14 -1.27 -11.24 16 9 C 0.14 2.74 6.61 86.38 0.57 3.31 16 10 C 0.05 0.89 5.01 86.30 0.43 1.32 16 11 N -0.52 -8.22 5.34 -881.51 -4.71 -12.92 16 12 C 0.03 0.40 6.45 86.45 0.56 0.96 16 13 C -0.12 -1.25 7.02 31.60 0.22 -1.03 16 14 C -0.12 -1.24 7.01 31.60 0.22 -1.02 16 15 C 0.02 0.27 5.92 86.45 0.51 0.78 16 16 C 0.08 2.32 11.22 84.19 0.94 3.26 16 17 C -0.12 -5.15 9.54 22.29 0.21 -4.94 16 18 C -0.21 -9.97 7.21 22.63 0.16 -9.81 16 19 C 0.02 1.16 5.10 -21.17 -0.11 1.06 16 20 C -0.45 -24.07 8.91 23.38 0.21 -23.86 16 21 H 0.08 4.25 6.55 -2.91 -0.02 4.24 16 22 C 0.05 2.65 5.42 85.26 0.46 3.11 16 23 N -0.83 -43.46 13.93 21.83 0.30 -43.16 16 24 Si 0.96 41.44 24.53 68.60 1.68 43.13 16 25 H -0.25 -10.37 6.71 99.48 0.67 -9.70 16 26 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.26 -11.95 6.85 99.48 0.68 -11.27 16 28 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 29 H 0.06 2.53 6.30 -2.39 -0.02 2.52 16 30 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.20 5.17 7.31 -2.91 -0.02 5.15 16 32 H 0.11 1.71 7.39 -2.39 -0.02 1.69 16 33 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.08 1.65 8.08 -2.38 -0.02 1.63 16 35 H 0.03 0.70 7.77 -2.39 -0.02 0.68 16 36 H 0.04 0.60 8.00 -2.39 -0.02 0.58 16 37 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 1.04 7.85 -2.39 -0.02 1.02 16 43 H 0.04 0.59 7.75 -2.39 -0.02 0.57 16 44 H 0.19 5.16 8.06 -2.91 -0.02 5.14 16 45 H 0.14 4.69 7.00 -2.91 -0.02 4.67 16 46 H 0.11 5.03 4.84 -2.91 -0.01 5.02 16 47 H 0.30 13.85 8.30 -92.71 -0.77 13.08 16 Total: -1.00 -61.73 377.06 1.05 -60.68 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.91 Total: 24.89 kcal Atomic # 6 Polarization: -34.97 SS G_CDS: 6.53 Total: -28.44 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -8.07 Total: -100.25 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 1.68 Total: 43.13 kcal Total: -61.73 1.05 -60.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222465794.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.998 kcal (2) G-P(sol) polarization free energy of solvation -61.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds