Wall clock time and date at job start Tue Mar 31 2020 15:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.40845 * 2 1 4 4 O 1.42880 * 109.40565 * 240.23471 * 2 1 3 5 5 C 1.43368 * 114.65301 * 182.48156 * 4 2 1 6 6 C 1.53003 * 108.53297 * 56.67957 * 5 4 2 7 7 H 1.09003 * 109.92871 * 65.81965 * 6 5 4 8 8 O 1.42955 * 110.39417 * 187.25108 * 6 5 4 9 9 C 1.35390 * 116.84714 * 167.98585 * 8 6 5 10 10 C 1.30722 * 123.43441 * 342.81189 * 9 8 6 11 11 C 1.50639 * 122.57695 * 0.11250 * 10 9 8 12 12 H 1.08999 * 109.56881 * 102.43653 * 11 10 9 13 13 O 1.42906 * 109.56507 * 222.66125 * 11 10 9 14 14 C 1.42892 * 114.00440 * 269.99878 * 13 11 10 15 15 C 1.53003 * 109.47319 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.46838 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47119 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.53147 * 108.90484 * 342.49065 * 11 10 9 28 28 H 1.09002 * 109.93295 * 288.09842 * 27 11 10 29 29 O 1.42829 * 110.37233 * 166.09055 * 27 11 10 30 30 H 1.08998 * 109.46730 * 300.15941 * 1 2 3 31 31 H 1.08996 * 109.47371 * 60.15625 * 1 2 3 32 32 H 1.09000 * 109.47434 * 180.15957 * 1 2 3 33 33 H 1.09002 * 109.47625 * 179.83870 * 3 2 1 34 34 H 1.08997 * 109.47173 * 299.84808 * 3 2 1 35 35 H 1.09008 * 109.46947 * 59.84141 * 3 2 1 36 36 H 1.09008 * 109.15850 * 297.25310 * 5 4 2 37 37 H 1.09005 * 110.13702 * 176.68718 * 5 4 2 38 38 H 1.08006 * 118.28231 * 162.79018 * 9 8 6 39 39 H 1.08003 * 118.71677 * 180.08851 * 10 9 8 40 40 H 1.09004 * 109.47057 * 60.00074 * 14 13 11 41 41 H 1.09000 * 109.47225 * 300.00594 * 14 13 11 42 42 H 1.08998 * 109.46872 * 60.00433 * 15 14 13 43 43 H 1.09002 * 109.46620 * 299.99963 * 15 14 13 44 44 H 1.08998 * 109.46943 * 60.00478 * 16 15 14 45 45 H 1.08994 * 109.47116 * 300.00090 * 16 15 14 46 46 H 1.09004 * 109.46806 * 60.00265 * 17 16 15 47 47 H 1.09000 * 109.47828 * 300.00570 * 17 16 15 48 48 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 49 49 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 50 50 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0384 1.4430 0.0000 4 8 2.0047 -0.6690 -1.1698 5 6 3.4312 -0.7833 -1.2560 6 6 3.9382 -1.5006 -0.0032 7 1 3.5753 -2.5284 0.0089 8 8 5.3672 -1.4881 0.0341 9 6 5.9518 -1.8603 1.1971 10 6 5.3176 -1.9073 2.3393 11 6 3.8601 -1.5509 2.4730 12 1 3.2664 -2.4622 2.5441 13 8 3.6665 -0.7608 3.6480 14 6 3.3862 -1.5249 4.8225 15 6 3.1976 -0.5812 6.0119 16 6 2.8968 -1.3993 7.2694 17 6 2.7089 -0.4556 8.4589 18 6 2.4087 -1.2737 9.7164 19 6 2.2230 -0.3441 10.8880 20 1 2.3099 0.7234 10.7494 21 6 1.9359 -0.8562 12.1356 22 7 1.7684 -0.0447 13.1569 23 14 1.7850 -2.7027 12.3752 24 1 3.1139 -3.2669 12.7228 25 1 0.8256 -2.9824 13.4737 26 1 1.2954 -3.3264 11.1196 27 6 3.4299 -0.7505 1.2402 28 1 3.8644 0.2486 1.2755 29 8 2.0055 -0.6717 1.1708 30 1 -0.3633 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8913 32 1 -0.3634 -1.0276 0.0029 33 1 3.1284 1.4443 0.0029 34 1 1.6767 1.9556 -0.8913 35 1 1.6721 1.9573 0.8886 36 1 3.8675 0.2143 -1.3083 37 1 3.7092 -1.3539 -2.1422 38 1 6.9968 -2.1330 1.1804 39 1 5.8597 -2.2141 3.2216 40 1 4.2173 -2.2011 5.0230 41 1 2.4753 -2.1039 4.6705 42 1 2.3663 0.0947 5.8112 43 1 4.1084 -0.0019 6.1641 44 1 3.7278 -2.0754 7.4703 45 1 1.9860 -1.9782 7.1169 46 1 1.8781 0.2209 8.2582 47 1 3.6199 0.1231 8.6112 48 1 3.2398 -1.9499 9.9169 49 1 1.4978 -1.8526 9.5645 50 1 1.5668 -0.4050 14.0346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224374812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:42 Heat of formation + Delta-G solvation = -172.932799 kcal Electronic energy + Delta-G solvation = -28326.111901 eV Core-core repulsion = 24318.895581 eV Total energy + Delta-G solvation = -4007.216320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.65914 -39.57231 -38.22288 -36.29717 -35.40004 -33.61648 -33.08667 -32.44942 -30.87507 -30.47011 -28.06328 -27.66606 -26.58399 -24.02352 -23.75789 -23.14502 -20.97087 -20.94043 -20.01743 -19.88661 -18.62903 -17.47761 -17.38903 -16.66950 -16.50305 -16.26375 -15.94829 -15.48652 -15.23523 -14.95985 -14.68244 -14.23746 -14.14555 -13.90021 -13.51544 -13.22255 -13.10144 -12.92604 -12.70165 -12.61711 -12.56069 -12.45151 -12.22346 -12.05330 -11.92429 -11.81936 -11.51881 -11.32451 -11.19369 -11.00079 -10.65816 -10.52947 -10.44159 -10.04532 -9.86158 -9.72301 -9.65422 -9.44746 -9.12555 -8.98040 -8.50378 -6.00906 -3.98319 1.67857 2.57046 2.89268 3.18006 3.32647 3.37408 3.39778 3.44087 3.90532 4.11966 4.24960 4.31932 4.33249 4.44103 4.48221 4.65829 4.70249 4.89278 5.00757 5.05208 5.09392 5.14379 5.18728 5.21620 5.23853 5.29208 5.32665 5.33230 5.44641 5.47186 5.59798 5.65325 5.67964 5.71169 5.94735 6.00481 6.21970 6.27449 6.31346 6.41222 6.68686 6.70232 6.77978 6.94412 6.98567 7.05668 7.37069 7.49733 7.84256 8.58730 9.04752 9.62004 11.12746 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.002028 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.452447 B =13803.033026 C =14622.152506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.263 3.737 3 C -0.207 4.207 4 O -0.377 6.377 5 C 0.069 3.931 6 C 0.028 3.972 7 H 0.092 0.908 8 O -0.312 6.312 9 C 0.061 3.939 10 C -0.287 4.287 11 C 0.140 3.860 12 H 0.078 0.922 13 O -0.367 6.367 14 C 0.062 3.938 15 C -0.116 4.116 16 C -0.118 4.118 17 C -0.102 4.102 18 C -0.015 4.015 19 C -0.519 4.519 20 H 0.071 0.929 21 C 0.063 3.937 22 N -0.905 5.905 23 Si 0.881 3.119 24 H -0.278 1.278 25 H -0.288 1.288 26 H -0.266 1.266 27 C 0.059 3.941 28 H 0.089 0.911 29 O -0.364 6.364 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.168 0.832 39 H 0.136 0.864 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.053 0.947 48 H 0.010 0.990 49 H 0.014 0.986 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.518 -2.993 -34.438 34.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.187 3.813 3 C -0.265 4.265 4 O -0.298 6.298 5 C -0.008 4.008 6 C -0.030 4.030 7 H 0.110 0.890 8 O -0.226 6.226 9 C -0.001 4.001 10 C -0.307 4.307 11 C 0.082 3.918 12 H 0.095 0.905 13 O -0.286 6.286 14 C -0.014 4.014 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.139 4.139 18 C -0.053 4.053 19 C -0.557 4.557 20 H 0.089 0.911 21 C -0.137 4.137 22 N -0.545 5.545 23 Si 0.709 3.291 24 H -0.204 1.204 25 H -0.214 1.214 26 H -0.190 1.190 27 C 0.001 3.999 28 H 0.106 0.894 29 O -0.285 6.285 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.132 0.868 38 H 0.185 0.815 39 H 0.153 0.847 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.072 0.928 48 H 0.028 0.972 49 H 0.033 0.967 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.308 -2.862 -34.416 34.802 hybrid contribution 0.291 -1.146 0.683 1.366 sum 4.599 -4.009 -33.732 34.280 Atomic orbital electron populations 1.21630 0.88873 1.04294 1.03701 1.22952 0.95013 0.88072 0.75248 1.22862 1.02496 0.96585 1.04519 1.88161 1.20174 1.78950 1.42518 1.22501 0.81068 1.00711 0.96500 1.23785 0.80233 1.01581 0.97374 0.89036 1.85990 1.19590 1.83052 1.33973 1.22166 0.97884 0.95951 0.84084 1.23148 0.97865 1.10766 0.98872 1.20558 0.92308 0.93820 0.85149 0.90467 1.87969 1.91405 1.33283 1.15963 1.22713 0.99125 0.94626 0.84909 1.21573 1.02811 0.98378 0.92552 1.21618 1.01146 0.98680 0.94125 1.21438 1.00929 0.97694 0.93853 1.19590 0.95949 0.96084 0.93650 1.21197 1.47819 0.94877 0.91822 0.91090 1.25063 0.94788 0.97848 0.96020 1.69923 1.49364 1.34759 1.00428 0.86755 0.78121 0.86330 0.77930 1.20360 1.21446 1.19022 1.22816 0.82623 1.00098 0.94357 0.89366 1.88239 1.19373 1.78386 1.42529 0.89700 0.89975 0.90745 0.91757 0.90186 0.89825 0.91230 0.86755 0.81511 0.84664 0.93405 0.93224 0.91240 0.91319 0.92455 0.92390 0.92767 0.92818 0.97188 0.96737 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 9.20 37.16 0.34 -0.59 16 2 C 0.26 2.37 1.49 -26.73 -0.04 2.33 16 3 C -0.21 -1.56 8.15 37.15 0.30 -1.25 16 4 O -0.38 -3.41 10.29 -58.98 -0.61 -4.02 16 5 C 0.07 0.51 6.36 37.16 0.24 0.75 16 6 C 0.03 0.24 3.07 -26.29 -0.08 0.16 16 7 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 8 O -0.31 -2.71 10.12 -17.86 -0.18 -2.90 16 9 C 0.06 0.48 10.86 29.09 0.32 0.80 16 10 C -0.29 -2.66 9.55 -35.98 -0.34 -3.00 16 11 C 0.14 1.55 2.64 -27.84 -0.07 1.48 16 12 H 0.08 0.85 7.79 -51.93 -0.40 0.44 16 13 O -0.37 -4.89 9.98 -35.23 -0.35 -5.24 16 14 C 0.06 0.79 5.74 37.16 0.21 1.00 16 15 C -0.12 -1.64 5.58 -26.73 -0.15 -1.78 16 16 C -0.12 -1.90 5.21 -26.73 -0.14 -2.03 16 17 C -0.10 -2.05 5.15 -26.74 -0.14 -2.18 16 18 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 19 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 20 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 21 C 0.06 1.89 5.47 -17.82 -0.10 1.80 16 22 N -0.91 -28.47 13.96 55.43 0.77 -27.70 16 23 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 27 C 0.06 0.62 2.16 -26.21 -0.06 0.56 16 28 H 0.09 0.97 6.54 -51.93 -0.34 0.63 16 29 O -0.36 -4.13 10.04 -59.22 -0.59 -4.73 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.06 0.49 5.20 -51.93 -0.27 0.22 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.64 8.14 -51.92 -0.42 0.22 16 36 H 0.07 0.47 6.66 -51.92 -0.35 0.12 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.17 0.82 8.06 -52.48 -0.42 0.40 16 39 H 0.14 1.16 8.06 -52.48 -0.42 0.73 16 40 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 46 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.01 0.24 7.58 -51.93 -0.39 -0.16 16 49 H 0.01 0.35 7.19 -51.93 -0.37 -0.02 16 50 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 LS Contribution 392.41 15.07 5.91 5.91 Total: -1.00 -33.19 392.41 -8.77 -41.96 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -8.90 Total: -2.77 kcal Atomic # 6 Polarization: -17.84 SS G_CDS: -0.15 Total: -18.00 kcal Atomic # 7 Polarization: -28.47 SS G_CDS: 0.77 Total: -27.70 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -1.73 Total: -16.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.19 -8.77 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.977 kcal (2) G-P(sol) polarization free energy of solvation -33.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds