Wall clock time and date at job start Tue Mar 31 2020 15:05:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.40845 * 2 1 4 4 O 1.42880 * 109.40565 * 240.23471 * 2 1 3 5 5 C 1.43368 * 114.65301 * 182.48156 * 4 2 1 6 6 C 1.53003 * 108.53297 * 56.67957 * 5 4 2 7 7 H 1.09003 * 109.92871 * 65.81965 * 6 5 4 8 8 O 1.42955 * 110.39417 * 187.25108 * 6 5 4 9 9 C 1.35390 * 116.84714 * 167.98585 * 8 6 5 10 10 C 1.30722 * 123.43441 * 342.81189 * 9 8 6 11 11 C 1.50639 * 122.57695 * 0.11250 * 10 9 8 12 12 H 1.08999 * 109.56881 * 102.43653 * 11 10 9 13 13 O 1.42906 * 109.56507 * 222.66125 * 11 10 9 14 14 C 1.42892 * 114.00440 * 269.99878 * 13 11 10 15 15 C 1.53003 * 109.47319 * 180.02562 * 14 13 11 16 16 C 1.53003 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.52994 * 109.46838 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47119 * 180.02562 * 17 16 15 19 19 C 1.50702 * 109.47159 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72211 * 19 18 17 22 22 N 1.31514 * 119.99985 * 180.27663 * 21 19 18 23 23 Si 1.86800 * 119.99777 * 0.28166 * 21 19 18 24 24 H 1.48498 * 109.47109 * 89.99834 * 23 21 19 25 25 H 1.48507 * 109.46754 * 209.99574 * 23 21 19 26 26 H 1.48498 * 109.47278 * 329.99405 * 23 21 19 27 27 C 1.53147 * 108.90484 * 342.49065 * 11 10 9 28 28 H 1.09002 * 109.93295 * 288.09842 * 27 11 10 29 29 O 1.42829 * 110.37233 * 166.09055 * 27 11 10 30 30 H 1.08998 * 109.46730 * 300.15941 * 1 2 3 31 31 H 1.08996 * 109.47371 * 60.15625 * 1 2 3 32 32 H 1.09000 * 109.47434 * 180.15957 * 1 2 3 33 33 H 1.09002 * 109.47625 * 179.83870 * 3 2 1 34 34 H 1.08997 * 109.47173 * 299.84808 * 3 2 1 35 35 H 1.09008 * 109.46947 * 59.84141 * 3 2 1 36 36 H 1.09008 * 109.15850 * 297.25310 * 5 4 2 37 37 H 1.09005 * 110.13702 * 176.68718 * 5 4 2 38 38 H 1.08006 * 118.28231 * 162.79018 * 9 8 6 39 39 H 1.08003 * 118.71677 * 180.08851 * 10 9 8 40 40 H 1.09004 * 109.47057 * 60.00074 * 14 13 11 41 41 H 1.09000 * 109.47225 * 300.00594 * 14 13 11 42 42 H 1.08998 * 109.46872 * 60.00433 * 15 14 13 43 43 H 1.09002 * 109.46620 * 299.99963 * 15 14 13 44 44 H 1.08998 * 109.46943 * 60.00478 * 16 15 14 45 45 H 1.08994 * 109.47116 * 300.00090 * 16 15 14 46 46 H 1.09004 * 109.46806 * 60.00265 * 17 16 15 47 47 H 1.09000 * 109.47828 * 300.00570 * 17 16 15 48 48 H 1.09004 * 109.47066 * 60.00422 * 18 17 16 49 49 H 1.08994 * 109.47405 * 300.00252 * 18 17 16 50 50 H 0.96996 * 119.99730 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0384 1.4430 0.0000 4 8 2.0047 -0.6690 -1.1698 5 6 3.4312 -0.7833 -1.2560 6 6 3.9382 -1.5006 -0.0032 7 1 3.5753 -2.5284 0.0089 8 8 5.3672 -1.4881 0.0341 9 6 5.9518 -1.8603 1.1971 10 6 5.3176 -1.9073 2.3393 11 6 3.8601 -1.5509 2.4730 12 1 3.2664 -2.4622 2.5441 13 8 3.6665 -0.7608 3.6480 14 6 3.3862 -1.5249 4.8225 15 6 3.1976 -0.5812 6.0119 16 6 2.8968 -1.3993 7.2694 17 6 2.7089 -0.4556 8.4589 18 6 2.4087 -1.2737 9.7164 19 6 2.2230 -0.3441 10.8880 20 1 2.3099 0.7234 10.7494 21 6 1.9359 -0.8562 12.1356 22 7 1.7684 -0.0447 13.1569 23 14 1.7850 -2.7027 12.3752 24 1 3.1139 -3.2669 12.7228 25 1 0.8256 -2.9824 13.4737 26 1 1.2954 -3.3264 11.1196 27 6 3.4299 -0.7505 1.2402 28 1 3.8644 0.2486 1.2755 29 8 2.0055 -0.6717 1.1708 30 1 -0.3633 0.5163 0.8886 31 1 -0.3634 0.5114 -0.8913 32 1 -0.3634 -1.0276 0.0029 33 1 3.1284 1.4443 0.0029 34 1 1.6767 1.9556 -0.8913 35 1 1.6721 1.9573 0.8886 36 1 3.8675 0.2143 -1.3083 37 1 3.7092 -1.3539 -2.1422 38 1 6.9968 -2.1330 1.1804 39 1 5.8597 -2.2141 3.2216 40 1 4.2173 -2.2011 5.0230 41 1 2.4753 -2.1039 4.6705 42 1 2.3663 0.0947 5.8112 43 1 4.1084 -0.0019 6.1641 44 1 3.7278 -2.0754 7.4703 45 1 1.9860 -1.9782 7.1169 46 1 1.8781 0.2209 8.2582 47 1 3.6199 0.1231 8.6112 48 1 3.2398 -1.9499 9.9169 49 1 1.4978 -1.8526 9.5645 50 1 1.5668 -0.4050 14.0346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224374812.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:41 Heat of formation + Delta-G solvation = -193.705171 kcal Electronic energy + Delta-G solvation = -28327.012658 eV Core-core repulsion = 24318.895581 eV Total energy + Delta-G solvation = -4008.117077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.35087 -40.25207 -39.13291 -37.18281 -36.74692 -34.89496 -34.20469 -33.55234 -32.23435 -31.40485 -28.87592 -28.50377 -27.87064 -25.06689 -24.61397 -24.26056 -22.30454 -21.78476 -21.57634 -20.59791 -19.32739 -18.88142 -18.20848 -18.09943 -17.30817 -17.10689 -16.67866 -16.48974 -16.32442 -15.89696 -15.82641 -15.57400 -15.05694 -14.85163 -14.78602 -14.32768 -14.02333 -13.88234 -13.77220 -13.59809 -13.51305 -13.35368 -13.14503 -13.11046 -12.98473 -12.82531 -12.70097 -12.56679 -12.15038 -12.09481 -12.00868 -11.86220 -11.73007 -11.40656 -11.34600 -11.27349 -11.08604 -10.76501 -10.73939 -10.60615 -9.65234 -8.29719 -6.34053 1.02657 1.35569 1.38037 1.50492 1.95069 2.20765 2.36530 2.50541 2.59497 3.05378 3.19822 3.38633 3.61177 3.63559 3.71769 3.76873 3.92685 3.97858 4.00291 4.14022 4.19515 4.29390 4.37357 4.43811 4.45216 4.50086 4.53511 4.62221 4.62797 4.67661 4.70287 4.72912 4.82600 4.86529 4.92742 4.97723 5.05009 5.14789 5.17097 5.25315 5.31077 5.32552 5.57808 5.62117 5.65091 5.68255 6.03260 6.13612 6.29099 6.29277 6.74302 7.30534 8.87363 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019666 B = 0.002028 C = 0.001914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.452447 B =13803.033026 C =14622.152506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.253 3.747 3 C -0.203 4.203 4 O -0.385 6.385 5 C 0.066 3.934 6 C 0.032 3.968 7 H 0.090 0.910 8 O -0.314 6.314 9 C 0.071 3.929 10 C -0.306 4.306 11 C 0.134 3.866 12 H 0.073 0.927 13 O -0.387 6.387 14 C 0.067 3.933 15 C -0.109 4.109 16 C -0.107 4.107 17 C -0.097 4.097 18 C -0.014 4.014 19 C -0.536 4.536 20 H 0.028 0.972 21 C -0.002 4.002 22 N -0.954 5.954 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.245 1.245 27 C 0.058 3.942 28 H 0.078 0.922 29 O -0.386 6.386 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.201 0.799 39 H 0.142 0.858 40 H 0.062 0.938 41 H 0.053 0.947 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.066 0.934 46 H 0.044 0.956 47 H 0.046 0.954 48 H 0.020 0.980 49 H 0.020 0.980 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.258 -5.107 -36.504 37.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.178 3.822 3 C -0.261 4.261 4 O -0.306 6.306 5 C -0.010 4.010 6 C -0.025 4.025 7 H 0.108 0.892 8 O -0.228 6.228 9 C 0.009 3.991 10 C -0.326 4.326 11 C 0.076 3.924 12 H 0.091 0.909 13 O -0.307 6.307 14 C -0.009 4.009 15 C -0.147 4.147 16 C -0.144 4.144 17 C -0.135 4.135 18 C -0.051 4.051 19 C -0.574 4.574 20 H 0.046 0.954 21 C -0.198 4.198 22 N -0.595 5.595 23 Si 0.779 3.221 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.168 1.168 27 C 0.000 4.000 28 H 0.096 0.904 29 O -0.308 6.308 30 H 0.104 0.896 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.153 0.847 38 H 0.217 0.783 39 H 0.160 0.840 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.089 0.911 45 H 0.084 0.916 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.039 0.961 49 H 0.038 0.962 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.054 -4.969 -36.513 37.194 hybrid contribution 0.067 -0.358 1.307 1.356 sum 5.122 -5.327 -35.206 35.973 Atomic orbital electron populations 1.21687 0.87936 1.04203 1.04667 1.23239 0.95832 0.88483 0.74690 1.22832 1.02259 0.95858 1.05105 1.88146 1.21096 1.79046 1.42337 1.22681 0.80340 1.01364 0.96608 1.23764 0.80275 1.01346 0.97114 0.89210 1.86000 1.19465 1.82960 1.34381 1.22687 0.99019 0.94092 0.83310 1.23130 0.96995 1.12589 0.99866 1.20714 0.93674 0.93462 0.84500 0.90903 1.87923 1.91653 1.34368 1.16727 1.22609 0.99923 0.94110 0.84242 1.21433 1.02326 0.98311 0.92601 1.21460 1.02125 0.97963 0.92873 1.21336 1.00200 0.97915 0.94058 1.19565 0.96430 0.95695 0.93405 1.21579 1.47792 0.93925 0.94102 0.95391 1.26124 0.94245 1.03920 0.95502 1.70085 1.50654 1.37525 1.01190 0.85571 0.78769 0.79043 0.78726 1.18991 1.20967 1.16814 1.22820 0.82463 0.99734 0.95027 0.90399 1.88214 1.19832 1.78926 1.43803 0.89614 0.88138 0.91348 0.92087 0.88486 0.90310 0.90519 0.84690 0.78272 0.83982 0.91945 0.92899 0.92085 0.91585 0.91144 0.91568 0.93733 0.93510 0.96135 0.96189 0.92511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.77 9.20 71.98 0.66 -1.11 16 2 C 0.25 4.39 1.49 30.59 0.05 4.44 16 3 C -0.20 -2.90 8.15 71.98 0.59 -2.31 16 4 O -0.39 -6.51 10.29 -126.27 -1.30 -7.81 16 5 C 0.07 0.88 6.36 71.98 0.46 1.34 16 6 C 0.03 0.53 3.07 30.88 0.09 0.62 16 7 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 8 O -0.31 -4.86 10.12 -86.82 -0.88 -5.74 16 9 C 0.07 0.96 10.86 68.07 0.74 1.70 16 10 C -0.31 -5.22 9.55 25.91 0.25 -4.97 16 11 C 0.13 2.90 2.64 29.88 0.08 2.98 16 12 H 0.07 1.57 7.79 -2.39 -0.02 1.56 16 13 O -0.39 -10.11 9.98 -148.98 -1.49 -11.60 16 14 C 0.07 1.60 5.74 71.98 0.41 2.02 16 15 C -0.11 -2.97 5.58 30.60 0.17 -2.80 16 16 C -0.11 -3.23 5.21 30.59 0.16 -3.07 16 17 C -0.10 -3.89 5.15 30.59 0.16 -3.74 16 18 C -0.01 -0.65 4.04 29.85 0.12 -0.53 16 19 C -0.54 -32.06 9.66 25.60 0.25 -31.81 16 20 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 21 C 0.00 -0.10 5.47 84.66 0.46 0.36 16 22 N -0.95 -61.35 13.96 21.45 0.30 -61.05 16 23 Si 0.96 45.05 27.47 68.60 1.88 46.94 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 26 H -0.24 -10.64 6.54 99.48 0.65 -9.99 16 27 C 0.06 1.18 2.16 30.93 0.07 1.25 16 28 H 0.08 1.72 6.54 -2.39 -0.02 1.70 16 29 O -0.39 -8.73 10.04 -126.05 -1.27 -10.00 16 30 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 0.90 5.20 -2.39 -0.01 0.88 16 34 H 0.10 1.01 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.18 8.14 -2.38 -0.02 1.17 16 36 H 0.08 0.91 6.66 -2.38 -0.02 0.89 16 37 H 0.14 1.20 8.14 -2.38 -0.02 1.18 16 38 H 0.20 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.14 2.18 8.06 -2.91 -0.02 2.16 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.05 1.22 8.09 -2.39 -0.02 1.20 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 46 H 0.04 1.83 8.14 -2.38 -0.02 1.81 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.02 0.94 7.58 -2.38 -0.02 0.92 16 49 H 0.02 0.93 7.19 -2.39 -0.02 0.91 16 50 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -72.58 392.41 2.80 -69.78 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.83 Total: 15.11 kcal Atomic # 6 Polarization: -40.35 SS G_CDS: 4.71 Total: -35.64 kcal Atomic # 7 Polarization: -61.35 SS G_CDS: 0.30 Total: -61.05 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -4.93 Total: -35.14 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.88 Total: 46.94 kcal Total: -72.58 2.80 -69.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224374812.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.920 kcal (2) G-P(sol) polarization free energy of solvation -72.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds