Wall clock time and date at job start Tue Mar 31 2020 15:05:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50697 * 119.99890 * 2 1 4 4 H 1.08997 * 109.73945 * 359.32797 * 3 2 1 5 5 O 1.43162 * 109.68021 * 238.67146 * 3 2 1 6 6 C 1.43430 * 109.99596 * 243.63803 * 5 3 2 7 7 H 1.09000 * 110.17089 * 95.24332 * 6 5 3 8 8 O 1.42896 * 110.17971 * 216.98675 * 6 5 3 9 9 C 1.42897 * 114.00554 * 292.54198 * 8 6 5 10 10 C 1.52996 * 109.47598 * 180.02562 * 9 8 6 11 11 C 1.52998 * 109.47303 * 180.02562 * 10 9 8 12 12 C 1.52996 * 109.46929 * 179.97438 * 11 10 9 13 13 C 1.52998 * 109.46929 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99758 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00102 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00217 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00068 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00417 * 18 16 14 22 22 C 1.54542 * 105.89404 * 336.11969 * 6 5 3 23 23 H 1.08995 * 114.08393 * 157.39342 * 22 6 5 24 24 O 1.44370 * 108.47369 * 286.84082 * 22 6 5 25 25 C 1.43540 * 105.52567 * 140.48689 * 24 22 6 26 26 C 1.53001 * 109.61802 * 216.09805 * 25 24 22 27 27 C 1.52999 * 109.61958 * 95.90176 * 25 24 22 28 28 O 1.43180 * 108.86676 * 335.99862 * 25 24 22 29 29 C 1.43721 * 107.89065 * 2.20605 * 28 25 24 30 30 H 1.08998 * 113.17974 * 141.70193 * 29 28 25 31 31 H 1.08005 * 119.99595 * 179.97438 * 1 2 3 32 32 H 1.07994 * 120.00428 * 0.02562 * 1 2 3 33 33 H 1.08002 * 119.99818 * 179.97438 * 2 1 3 34 34 H 1.09000 * 109.46801 * 59.99776 * 9 8 6 35 35 H 1.08997 * 109.46663 * 300.00559 * 9 8 6 36 36 H 1.09004 * 109.47164 * 59.99534 * 10 9 8 37 37 H 1.09006 * 109.46801 * 300.00175 * 10 9 8 38 38 H 1.09000 * 109.46986 * 59.99807 * 11 10 9 39 39 H 1.09002 * 109.46857 * 299.99673 * 11 10 9 40 40 H 1.09000 * 109.47441 * 60.00090 * 12 11 10 41 41 H 1.09002 * 109.47087 * 299.99536 * 12 11 10 42 42 H 1.09001 * 109.47671 * 60.00109 * 13 12 11 43 43 H 1.09006 * 109.47297 * 299.99829 * 13 12 11 44 44 H 0.97001 * 119.99646 * 359.97438 * 17 16 14 45 45 H 1.09001 * 109.47178 * 179.44511 * 26 25 24 46 46 H 1.08999 * 109.46843 * 299.44056 * 26 25 24 47 47 H 1.08997 * 109.47136 * 59.44423 * 26 25 24 48 48 H 1.09000 * 109.47752 * 300.56045 * 27 25 24 49 49 H 1.09000 * 109.47290 * 60.55735 * 27 25 24 50 50 H 1.08999 * 109.47258 * 180.55486 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3590 2.1368 -0.0120 5 8 2.9115 1.3722 -1.1515 6 6 4.2864 1.4198 -0.7458 7 1 4.7163 0.4183 -0.7566 8 8 5.0262 2.2826 -1.6120 9 6 5.1565 1.7926 -2.9479 10 6 5.9625 2.7910 -3.7812 11 6 6.1015 2.2665 -5.2117 12 6 6.9069 3.2653 -6.0451 13 6 7.0464 2.7405 -7.4755 14 6 7.8393 3.7246 -8.2966 15 1 8.2066 4.6336 -7.8435 16 6 8.0957 3.4644 -9.6260 17 7 7.6481 2.3577 -10.1778 18 14 9.0779 4.6846 -10.6439 19 1 9.2144 4.1746 -12.0319 20 1 8.3746 5.9923 -10.6634 21 1 10.4261 4.8565 -10.0454 22 6 4.2839 1.9835 0.6931 23 1 5.1704 1.7269 1.2729 24 8 3.9859 3.3948 0.6311 25 6 3.1194 3.6538 1.7457 26 6 2.0794 4.7055 1.3543 27 6 3.9432 4.1665 2.9287 28 8 2.4588 2.4372 2.1112 29 6 2.9508 1.3932 1.2547 30 1 3.0809 0.4414 1.7698 31 1 -0.5400 -0.9354 -0.0004 32 1 -0.5400 0.9352 -0.0004 33 1 1.8499 -0.9353 0.0004 34 1 4.1668 1.6676 -3.3872 35 1 5.6717 0.8321 -2.9339 36 1 6.9522 2.9156 -3.3417 37 1 5.4477 3.7517 -3.7952 38 1 5.1116 2.1423 -5.6509 39 1 6.6161 1.3057 -5.1981 40 1 7.8968 3.3899 -5.6061 41 1 6.3919 4.2259 -6.0587 42 1 6.0567 2.6155 -7.9149 43 1 7.5617 1.7800 -7.4615 44 1 7.1378 1.7244 -9.6493 45 1 1.4166 4.8932 2.1991 46 1 2.5848 5.6305 1.0765 47 1 1.4958 4.3422 0.5084 48 1 4.6874 3.4192 3.2043 49 1 4.4450 5.0925 2.6479 50 1 3.2843 4.3530 3.7767 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224376246.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:49 Heat of formation + Delta-G solvation = -178.750965 kcal Electronic energy + Delta-G solvation = -28286.929186 eV Core-core repulsion = 24279.460572 eV Total energy + Delta-G solvation = -4007.468614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 326.197 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.98977 -38.95790 -37.46173 -35.78333 -35.22006 -33.98010 -33.30465 -32.98171 -30.35427 -29.61715 -28.09250 -27.65962 -25.95707 -23.43507 -22.84415 -22.56958 -21.67754 -21.06844 -20.57349 -20.24509 -18.38518 -17.69013 -16.80487 -16.74333 -16.56792 -16.27183 -15.55682 -15.28877 -15.06364 -14.76303 -14.56108 -14.15366 -13.80901 -13.67098 -13.29186 -13.13363 -13.08503 -12.93584 -12.70533 -12.66211 -12.55634 -12.41319 -12.25978 -11.98936 -11.94126 -11.79359 -11.44808 -11.02241 -10.96510 -10.84627 -10.55818 -10.46245 -10.36498 -10.07537 -9.98712 -9.86671 -9.77098 -9.71717 -9.55981 -8.44792 -8.26157 -6.29910 -3.98002 1.66516 2.53903 3.11390 3.33371 3.41339 3.47629 3.50103 3.68663 3.71155 3.93014 4.20268 4.27668 4.39940 4.48997 4.59442 4.60442 4.66757 4.76799 4.86568 5.07353 5.12868 5.15144 5.20057 5.26311 5.27626 5.30626 5.42629 5.46613 5.47286 5.50678 5.65003 5.66450 5.73489 5.76754 6.03928 6.08054 6.21568 6.26012 6.37669 6.42544 6.47740 6.65750 6.74907 6.86341 6.97858 7.07261 7.50276 7.63788 8.30628 8.53758 8.95889 9.74311 11.10832 Molecular weight = 326.20amu Principal moments of inertia in cm(-1) A = 0.019740 B = 0.001949 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.077207 B =14366.295593 C =15205.146594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.173 4.173 3 C 0.101 3.899 4 H 0.097 0.903 5 O -0.373 6.373 6 C 0.246 3.754 7 H 0.086 0.914 8 O -0.355 6.355 9 C 0.062 3.938 10 C -0.115 4.115 11 C -0.116 4.116 12 C -0.102 4.102 13 C 0.006 3.994 14 C -0.601 4.601 15 H 0.048 0.952 16 C 0.012 3.988 17 N -0.915 5.915 18 Si 1.069 2.931 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.288 1.288 22 C 0.028 3.972 23 H 0.124 0.876 24 O -0.335 6.335 25 C 0.244 3.756 26 C -0.154 4.154 27 C -0.171 4.171 28 O -0.363 6.363 29 C 0.035 3.965 30 H 0.140 0.860 31 H 0.105 0.895 32 H 0.100 0.900 33 H 0.116 0.884 34 H 0.058 0.942 35 H 0.048 0.952 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.006 0.994 43 H 0.006 0.994 44 H 0.268 0.732 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.068 0.932 48 H 0.063 0.937 49 H 0.079 0.921 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.255 -3.764 31.427 34.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.192 4.192 3 C 0.044 3.956 4 H 0.115 0.885 5 O -0.295 6.295 6 C 0.150 3.850 7 H 0.103 0.897 8 O -0.275 6.275 9 C -0.014 4.014 10 C -0.152 4.152 11 C -0.154 4.154 12 C -0.140 4.140 13 C -0.031 4.031 14 C -0.639 4.639 15 H 0.066 0.934 16 C -0.192 4.192 17 N -0.552 5.552 18 Si 0.897 3.103 19 H -0.208 1.208 20 H -0.215 1.215 21 H -0.215 1.215 22 C -0.030 4.030 23 H 0.142 0.858 24 O -0.255 6.255 25 C 0.168 3.832 26 C -0.212 4.212 27 C -0.228 4.228 28 O -0.284 6.284 29 C -0.023 4.023 30 H 0.157 0.843 31 H 0.124 0.876 32 H 0.118 0.882 33 H 0.134 0.866 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.024 0.976 43 H 0.024 0.976 44 H 0.078 0.922 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.087 0.913 48 H 0.082 0.918 49 H 0.098 0.902 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.711 -3.132 29.753 32.506 hybrid contribution -0.589 -0.676 1.689 1.912 sum -13.300 -3.807 31.442 34.351 Atomic orbital electron populations 1.23928 0.95666 1.02445 0.97634 1.23065 0.96360 0.97627 1.02110 1.22151 0.92377 0.96986 0.84132 0.88509 1.88509 1.16627 1.94426 1.29895 1.23811 0.80692 0.93125 0.87385 0.89677 1.88099 1.70123 1.47326 1.21921 1.22701 1.00140 0.97363 0.81221 1.21576 1.00009 0.98705 0.94933 1.21596 1.00865 0.99784 0.93118 1.21479 0.98155 0.97319 0.97032 1.19242 0.96231 0.96387 0.91201 1.22100 1.37253 1.07018 0.97519 0.93395 1.25870 0.97607 0.99490 0.96188 1.70780 1.34863 1.09820 1.39731 0.83547 0.75823 0.74831 0.76053 1.20808 1.21465 1.21484 1.25408 0.98405 0.82683 0.96537 0.85817 1.89336 1.66201 1.22335 1.47594 1.23586 0.87098 0.86492 0.86068 1.22101 0.98173 0.98147 1.02755 1.22397 1.00419 1.02471 0.97557 1.88748 1.64952 1.17112 1.57542 1.25134 0.91543 0.93834 0.91813 0.84287 0.87641 0.88211 0.86624 0.92344 0.93328 0.91447 0.91273 0.92397 0.92490 0.93247 0.93206 0.97592 0.97617 0.92160 0.90355 0.90231 0.91344 0.91817 0.90203 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 14.32 29.02 0.42 -0.67 16 2 C -0.17 -1.33 9.04 -36.03 -0.33 -1.65 16 3 C 0.10 0.95 3.43 -27.40 -0.09 0.86 16 4 H 0.10 0.99 7.10 -51.93 -0.37 0.62 16 5 O -0.37 -4.56 10.42 -61.48 -0.64 -5.20 16 6 C 0.25 2.70 3.74 37.97 0.14 2.84 16 7 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 8 O -0.36 -4.99 9.94 -65.27 -0.65 -5.64 16 9 C 0.06 0.85 5.83 37.16 0.22 1.07 16 10 C -0.11 -1.76 5.58 -26.73 -0.15 -1.91 16 11 C -0.12 -2.05 5.21 -26.73 -0.14 -2.19 16 12 C -0.10 -2.22 5.15 -26.73 -0.14 -2.36 16 13 C 0.01 0.17 4.28 -27.88 -0.12 0.05 16 14 C -0.60 -17.88 9.11 -34.44 -0.31 -18.19 16 15 H 0.05 1.40 7.74 -52.48 -0.41 0.99 16 16 C 0.01 0.35 5.46 -17.82 -0.10 0.25 16 17 N -0.92 -28.97 13.65 55.43 0.76 -28.21 16 18 Si 1.07 26.09 29.90 -169.99 -5.08 21.00 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.03 0.26 4.70 -24.19 -0.11 0.14 16 23 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 24 O -0.33 -3.89 10.01 -66.59 -0.67 -4.56 16 25 C 0.24 2.22 1.41 -26.73 -0.04 2.18 16 26 C -0.15 -1.25 9.23 37.16 0.34 -0.91 16 27 C -0.17 -1.21 9.20 37.16 0.34 -0.87 16 28 O -0.36 -3.27 10.33 -59.05 -0.61 -3.88 16 29 C 0.04 0.28 4.36 -24.51 -0.11 0.17 16 30 H 0.14 0.71 7.91 -51.93 -0.41 0.30 16 31 H 0.11 0.55 8.06 -52.48 -0.42 0.12 16 32 H 0.10 0.65 7.84 -52.49 -0.41 0.24 16 33 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.06 0.83 7.84 -51.93 -0.41 0.43 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.01 0.16 8.01 -51.93 -0.42 -0.25 16 43 H 0.01 0.15 8.01 -51.93 -0.42 -0.26 16 44 H 0.27 8.45 7.22 -40.82 -0.29 8.15 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.61 7.65 -51.93 -0.40 0.22 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 405.06 15.07 6.10 6.10 Total: -1.00 -34.66 405.06 -10.05 -44.72 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -9.09 Total: -3.15 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: -0.18 Total: -21.18 kcal Atomic # 7 Polarization: -28.97 SS G_CDS: 0.76 Total: -28.21 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -2.57 Total: -19.27 kcal Atomic # 14 Polarization: 26.09 SS G_CDS: -5.08 Total: 21.00 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.66 -10.05 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224376246.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.035 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds