Wall clock time and date at job start Tue Mar 31 2020 14:11:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35996 * 116.99868 * 2 1 4 4 C 1.38637 * 120.02148 * 0.27151 * 3 2 1 5 5 C 1.38669 * 120.03898 * 180.27689 * 4 3 2 6 6 O 1.35965 * 119.96603 * 179.72259 * 5 4 3 7 7 C 1.38667 * 120.06684 * 359.69991 * 5 4 3 8 8 C 1.38648 * 120.03339 * 0.02562 * 7 5 4 9 9 O 1.35995 * 120.01377 * 180.02562 * 8 7 5 10 10 C 1.42900 * 117.00087 * 359.97237 * 9 8 7 11 11 C 1.38959 * 119.96657 * 359.97438 * 8 7 5 12 12 O 1.36167 * 120.03421 * 179.97438 * 11 8 7 13 13 C 1.42908 * 116.99920 * 95.99517 * 12 11 8 14 14 H 1.08998 * 109.47186 * 39.42982 * 13 12 11 15 15 C 1.50698 * 109.47066 * 279.42792 * 13 12 11 16 16 H 1.07997 * 119.99913 * 119.72233 * 15 13 12 17 17 C 1.37882 * 120.00029 * 300.00147 * 15 13 12 18 18 N 1.31512 * 119.99994 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99813 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47536 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46935 * 120.00148 * 19 17 15 22 22 H 1.48504 * 109.47087 * 239.99861 * 19 17 15 23 23 C 1.52995 * 109.46950 * 159.43069 * 13 12 11 24 24 N 1.46904 * 109.47110 * 293.54300 * 23 13 12 25 25 C 1.46896 * 109.46900 * 66.00093 * 24 23 13 26 26 C 1.46903 * 109.46991 * 186.00079 * 24 23 13 27 27 C 1.46899 * 109.46875 * 306.00155 * 24 23 13 28 28 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47211 * 300.00280 * 1 2 3 30 30 H 1.09010 * 109.46848 * 60.00350 * 1 2 3 31 31 H 1.07998 * 119.98317 * 0.02562 * 4 3 2 32 32 H 0.96703 * 114.00479 * 269.97664 * 6 5 4 33 33 H 1.07994 * 119.98122 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47180 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47032 * 300.00082 * 10 9 8 36 36 H 1.08998 * 109.46782 * 60.00361 * 10 9 8 37 37 H 0.97002 * 120.00182 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.47703 * 53.54304 * 23 13 12 39 39 H 1.09000 * 109.47358 * 173.54718 * 23 13 12 40 40 H 1.09004 * 109.47208 * 52.32051 * 25 24 23 41 41 H 1.09000 * 109.46704 * 172.31665 * 25 24 23 42 42 H 1.08996 * 109.47049 * 292.31478 * 25 24 23 43 43 H 1.08999 * 109.47049 * 60.00014 * 26 24 23 44 44 H 1.08998 * 109.47015 * 180.02562 * 26 24 23 45 45 H 1.08998 * 109.47188 * 299.99842 * 26 24 23 46 46 H 1.08996 * 109.47415 * 59.99912 * 27 24 23 47 47 H 1.08998 * 109.46707 * 179.97438 * 27 24 23 48 48 H 1.09005 * 109.47039 * 299.99638 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3747 0.0057 5 6 1.9208 3.6105 -0.0001 6 8 1.1792 4.7501 -0.0002 7 6 3.3055 3.6851 -0.0053 8 6 4.0630 2.5239 -0.0053 9 8 5.4210 2.5976 -0.0099 10 6 5.9998 3.9041 -0.0152 11 6 3.4340 1.2848 0.0005 12 8 4.1767 0.1435 0.0001 13 6 4.4247 -0.4697 1.2669 14 1 3.5276 -0.4066 1.8828 15 6 5.5589 0.2434 1.9567 16 1 5.3967 0.7167 2.9138 17 6 6.8024 0.2966 1.3633 18 7 6.9986 -0.2754 0.1955 19 14 8.2081 1.1812 2.2181 20 1 7.7312 1.7355 3.5106 21 1 9.3156 0.2241 2.4690 22 1 8.6954 2.2867 1.3545 23 6 4.7977 -1.9387 1.0580 24 7 3.6379 -2.6679 0.5278 25 6 3.3226 -2.1733 -0.8190 26 6 3.9492 -4.1020 0.4624 27 6 2.4822 -2.4573 1.4098 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2132 2.3182 0.0105 32 1 0.9614 5.0776 -0.8836 33 1 3.7940 4.6483 -0.0094 34 1 7.0865 3.8201 -0.0189 35 1 5.6743 4.4421 -0.9055 36 1 5.6801 4.4467 0.8744 37 1 7.8733 -0.2377 -0.2222 38 1 5.6241 -2.0067 0.3505 39 1 5.0977 -2.3763 2.0102 40 1 4.2204 -2.2031 -1.4365 41 1 2.5531 -2.8026 -1.2661 42 1 2.9603 -1.1474 -0.7538 43 1 4.1833 -4.4689 1.4617 44 1 3.0888 -4.6430 0.0685 45 1 4.8068 -4.2582 -0.1921 46 1 2.2512 -1.3932 1.4583 47 1 1.6215 -2.9980 1.0161 48 1 2.7162 -2.8243 2.4092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227251338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:50 Heat of formation + Delta-G solvation = -6.866654 kcal Electronic energy + Delta-G solvation = -31599.382439 eV Core-core repulsion = 27547.597116 eV Total energy + Delta-G solvation = -4051.785323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.185 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.11194 -41.47666 -39.76575 -38.96986 -38.19604 -35.83512 -34.28723 -31.57946 -30.46324 -30.19777 -30.01289 -29.72766 -28.64784 -27.55869 -27.11874 -24.82168 -23.39823 -22.79509 -22.29251 -20.03401 -19.05820 -18.73277 -18.32802 -18.01670 -17.91157 -17.64225 -17.24379 -17.14076 -16.78869 -16.18154 -15.98746 -15.75807 -15.57783 -15.07508 -14.91804 -14.65650 -14.54387 -14.31892 -14.12360 -13.91550 -13.74557 -13.70908 -13.53065 -13.30151 -13.17961 -13.04172 -12.60953 -12.43729 -12.26188 -12.16858 -12.04570 -11.91508 -11.62285 -11.29950 -11.20964 -10.99722 -9.99756 -9.87677 -9.03684 -8.66602 -7.54207 -5.70227 0.35281 0.55258 0.59213 1.88822 2.16453 2.32091 2.35637 2.49441 2.57161 2.59337 2.66908 2.95852 3.14441 3.21092 3.30784 3.38622 3.48486 3.63527 3.74292 3.83509 3.88305 3.92387 3.92858 4.04104 4.08393 4.10168 4.16387 4.28396 4.32794 4.35944 4.39241 4.42741 4.53917 4.60862 4.63683 4.75083 4.95313 5.01098 5.07171 5.39533 5.40255 5.52280 5.57032 6.15347 6.40582 6.47467 6.69568 6.77967 7.20466 7.49778 8.11253 9.49644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.319 6.319 3 C 0.131 3.869 4 C -0.261 4.261 5 C 0.167 3.833 6 O -0.498 6.498 7 C -0.264 4.264 8 C 0.185 3.815 9 O -0.253 6.253 10 C 0.019 3.981 11 C 0.054 3.946 12 O -0.307 6.307 13 C 0.202 3.798 14 H 0.031 0.969 15 C -0.559 4.559 16 H 0.068 0.932 17 C 0.110 3.890 18 N -0.853 5.853 19 Si 0.891 3.109 20 H -0.270 1.270 21 H -0.279 1.279 22 H -0.275 1.275 23 C 0.002 3.998 24 N -0.268 5.268 25 C -0.045 4.045 26 C -0.041 4.041 27 C -0.047 4.047 28 H 0.098 0.902 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.393 0.607 33 H 0.136 0.864 34 H 0.098 0.902 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.273 0.727 38 H 0.157 0.843 39 H 0.116 0.884 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.151 0.849 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.114 0.886 46 H 0.129 0.871 47 H 0.104 0.896 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.409 -10.097 -3.012 15.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.234 6.234 3 C 0.086 3.914 4 C -0.280 4.280 5 C 0.122 3.878 6 O -0.309 6.309 7 C -0.283 4.283 8 C 0.137 3.863 9 O -0.163 6.163 10 C -0.076 4.076 11 C 0.008 3.992 12 O -0.224 6.224 13 C 0.149 3.851 14 H 0.049 0.951 15 C -0.595 4.595 16 H 0.087 0.913 17 C -0.100 4.100 18 N -0.487 5.487 19 Si 0.717 3.283 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.201 1.201 23 C -0.116 4.116 24 N 0.074 4.926 25 C -0.186 4.186 26 C -0.183 4.183 27 C -0.189 4.189 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.249 0.751 33 H 0.154 0.846 34 H 0.116 0.884 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.175 0.825 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.169 0.831 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.133 0.867 46 H 0.147 0.853 47 H 0.122 0.878 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.894 -10.649 -2.696 15.471 hybrid contribution 0.456 1.239 0.091 1.323 sum -10.438 -9.410 -2.605 14.293 Atomic orbital electron populations 1.23113 0.78175 1.03753 1.02211 1.85869 1.21469 1.26814 1.89230 1.18685 0.90603 0.84050 0.98089 1.21083 1.00334 0.91310 1.15317 1.17740 0.88501 0.85072 0.96443 1.84809 1.72454 1.39954 1.33652 1.21392 0.93977 0.98525 1.14451 1.18786 0.83983 0.91857 0.91716 1.86560 1.15061 1.28455 1.86271 1.23139 0.99670 0.84026 1.00801 1.16756 0.85381 0.86467 1.10631 1.86295 1.69835 1.34556 1.31752 1.20196 0.96029 0.86657 0.82257 0.95099 1.21194 0.94042 1.37621 1.06651 0.91336 1.24777 0.98562 0.92973 0.93729 1.69620 1.24066 1.40875 1.14093 0.86543 0.81412 0.80224 0.80076 1.19411 1.20505 1.20081 1.24811 0.87776 0.94383 1.04637 1.46314 1.16518 1.14071 1.15734 1.24446 1.05949 1.07235 0.80920 1.23971 1.06590 0.79620 1.08078 1.24125 0.88754 1.09424 0.96616 0.88339 0.92240 0.92215 0.84833 0.75068 0.84634 0.88402 0.93001 0.92784 0.91709 0.82529 0.86547 0.86846 0.89004 0.83138 0.87100 0.87502 0.86697 0.85261 0.87758 0.87314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.11 9.81 101.05 0.99 0.88 16 2 O -0.32 0.79 5.68 -34.39 -0.20 0.59 16 3 C 0.13 0.19 6.64 -39.17 -0.26 -0.07 16 4 C -0.26 -0.40 8.97 -39.27 -0.35 -0.75 16 5 C 0.17 0.49 6.70 -39.26 -0.26 0.23 16 6 O -0.50 -0.89 13.50 -19.63 -0.27 -1.15 16 7 C -0.26 -1.07 8.97 -39.27 -0.35 -1.42 16 8 C 0.19 1.06 6.59 -39.16 -0.26 0.81 16 9 O -0.25 -1.87 8.70 -34.39 -0.30 -2.16 16 10 C 0.02 0.08 9.81 101.05 0.99 1.07 16 11 C 0.05 0.23 5.43 -39.05 -0.21 0.02 16 12 O -0.31 -1.16 5.75 -45.60 -0.26 -1.42 16 13 C 0.20 0.55 1.88 -27.89 -0.05 0.50 16 14 H 0.03 0.05 5.71 -51.93 -0.30 -0.24 16 15 C -0.56 -4.46 8.02 -34.44 -0.28 -4.74 16 16 H 0.07 0.69 7.81 -52.49 -0.41 0.28 16 17 C 0.11 1.01 4.32 -17.82 -0.08 0.94 16 18 N -0.85 -7.72 10.95 55.43 0.61 -7.12 16 19 Si 0.89 8.63 29.54 -169.99 -5.02 3.61 16 20 H -0.27 -2.84 7.11 56.52 0.40 -2.44 16 21 H -0.28 -2.89 7.11 56.52 0.40 -2.49 16 22 H -0.28 -2.82 7.11 56.52 0.40 -2.42 16 23 C 0.00 0.00 3.56 -3.82 -0.01 -0.02 16 24 N -0.27 2.04 0.05 -395.62 -0.02 2.02 16 25 C -0.04 0.28 7.26 60.06 0.44 0.72 16 26 C -0.04 0.43 8.00 60.07 0.48 0.92 16 27 C -0.05 0.41 7.36 60.06 0.44 0.85 16 28 H 0.10 -0.78 8.14 -51.93 -0.42 -1.20 16 29 H 0.06 -0.28 7.65 -51.93 -0.40 -0.68 16 30 H 0.06 -0.29 7.67 -51.92 -0.40 -0.69 16 31 H 0.13 -0.07 6.29 -52.49 -0.33 -0.40 16 32 H 0.39 -1.20 9.06 45.56 0.41 -0.79 16 33 H 0.14 0.40 6.29 -52.49 -0.33 0.07 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.05 0.11 7.66 -51.93 -0.40 -0.29 16 36 H 0.05 0.18 7.66 -51.93 -0.40 -0.22 16 37 H 0.27 2.67 8.31 -40.82 -0.34 2.33 16 38 H 0.16 0.11 6.09 -51.93 -0.32 -0.20 16 39 H 0.12 -0.35 8.06 -51.93 -0.42 -0.77 16 40 H 0.11 -0.56 7.95 -51.93 -0.41 -0.97 16 41 H 0.09 -0.86 8.04 -51.93 -0.42 -1.28 16 42 H 0.15 -0.49 2.70 -51.93 -0.14 -0.64 16 43 H 0.11 -1.27 8.10 -51.93 -0.42 -1.69 16 44 H 0.11 -1.36 8.09 -51.93 -0.42 -1.78 16 45 H 0.11 -1.18 8.14 -51.93 -0.42 -1.60 16 46 H 0.13 -0.75 3.60 -51.93 -0.19 -0.94 16 47 H 0.10 -1.18 8.14 -51.93 -0.42 -1.61 16 48 H 0.11 -1.06 8.14 -51.93 -0.42 -1.48 16 LS Contribution 366.28 15.07 5.52 5.52 Total: 0.00 -17.09 366.28 -5.24 -22.33 By element: Atomic # 1 Polarization: -15.62 SS G_CDS: -6.53 Total: -22.15 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 1.22 Total: -0.08 kcal Atomic # 7 Polarization: -5.68 SS G_CDS: 0.59 Total: -5.09 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: -1.02 Total: -4.14 kcal Atomic # 14 Polarization: 8.63 SS G_CDS: -5.02 Total: 3.61 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -17.09 -5.24 -22.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227251338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.464 kcal (2) G-P(sol) polarization free energy of solvation -17.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds