Wall clock time and date at job start Tue Mar 31 2020 14:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35996 * 116.99868 * 2 1 4 4 C 1.38637 * 120.02148 * 0.27151 * 3 2 1 5 5 C 1.38669 * 120.03898 * 180.27689 * 4 3 2 6 6 O 1.35965 * 119.96603 * 179.72259 * 5 4 3 7 7 C 1.38667 * 120.06684 * 359.69991 * 5 4 3 8 8 C 1.38648 * 120.03339 * 0.02562 * 7 5 4 9 9 O 1.35995 * 120.01377 * 180.02562 * 8 7 5 10 10 C 1.42900 * 117.00087 * 359.97237 * 9 8 7 11 11 C 1.38959 * 119.96657 * 359.97438 * 8 7 5 12 12 O 1.36167 * 120.03421 * 179.97438 * 11 8 7 13 13 C 1.42908 * 116.99920 * 95.99517 * 12 11 8 14 14 H 1.08998 * 109.47186 * 39.42982 * 13 12 11 15 15 C 1.50698 * 109.47066 * 279.42792 * 13 12 11 16 16 H 1.07997 * 119.99913 * 119.72233 * 15 13 12 17 17 C 1.37882 * 120.00029 * 300.00147 * 15 13 12 18 18 N 1.31512 * 119.99994 * 359.97438 * 17 15 13 19 19 Si 1.86798 * 119.99813 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47536 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46935 * 120.00148 * 19 17 15 22 22 H 1.48504 * 109.47087 * 239.99861 * 19 17 15 23 23 C 1.52995 * 109.46950 * 159.43069 * 13 12 11 24 24 N 1.46904 * 109.47110 * 293.54300 * 23 13 12 25 25 C 1.46896 * 109.46900 * 66.00093 * 24 23 13 26 26 C 1.46903 * 109.46991 * 186.00079 * 24 23 13 27 27 C 1.46899 * 109.46875 * 306.00155 * 24 23 13 28 28 H 1.08997 * 109.47302 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47211 * 300.00280 * 1 2 3 30 30 H 1.09010 * 109.46848 * 60.00350 * 1 2 3 31 31 H 1.07998 * 119.98317 * 0.02562 * 4 3 2 32 32 H 0.96703 * 114.00479 * 269.97664 * 6 5 4 33 33 H 1.07994 * 119.98122 * 180.02562 * 7 5 4 34 34 H 1.09000 * 109.47180 * 180.02562 * 10 9 8 35 35 H 1.09000 * 109.47032 * 300.00082 * 10 9 8 36 36 H 1.08998 * 109.46782 * 60.00361 * 10 9 8 37 37 H 0.97002 * 120.00182 * 179.97438 * 18 17 15 38 38 H 1.09003 * 109.47703 * 53.54304 * 23 13 12 39 39 H 1.09000 * 109.47358 * 173.54718 * 23 13 12 40 40 H 1.09004 * 109.47208 * 52.32051 * 25 24 23 41 41 H 1.09000 * 109.46704 * 172.31665 * 25 24 23 42 42 H 1.08996 * 109.47049 * 292.31478 * 25 24 23 43 43 H 1.08999 * 109.47049 * 60.00014 * 26 24 23 44 44 H 1.08998 * 109.47015 * 180.02562 * 26 24 23 45 45 H 1.08998 * 109.47188 * 299.99842 * 26 24 23 46 46 H 1.08996 * 109.47415 * 59.99912 * 27 24 23 47 47 H 1.08998 * 109.46707 * 179.97438 * 27 24 23 48 48 H 1.09005 * 109.47039 * 299.99638 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2917 2.3747 0.0057 5 6 1.9208 3.6105 -0.0001 6 8 1.1792 4.7501 -0.0002 7 6 3.3055 3.6851 -0.0053 8 6 4.0630 2.5239 -0.0053 9 8 5.4210 2.5976 -0.0099 10 6 5.9998 3.9041 -0.0152 11 6 3.4340 1.2848 0.0005 12 8 4.1767 0.1435 0.0001 13 6 4.4247 -0.4697 1.2669 14 1 3.5276 -0.4066 1.8828 15 6 5.5589 0.2434 1.9567 16 1 5.3967 0.7167 2.9138 17 6 6.8024 0.2966 1.3633 18 7 6.9986 -0.2754 0.1955 19 14 8.2081 1.1812 2.2181 20 1 7.7312 1.7355 3.5106 21 1 9.3156 0.2241 2.4690 22 1 8.6954 2.2867 1.3545 23 6 4.7977 -1.9387 1.0580 24 7 3.6379 -2.6679 0.5278 25 6 3.3226 -2.1733 -0.8190 26 6 3.9492 -4.1020 0.4624 27 6 2.4822 -2.4573 1.4098 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2132 2.3182 0.0105 32 1 0.9614 5.0776 -0.8836 33 1 3.7940 4.6483 -0.0094 34 1 7.0865 3.8201 -0.0189 35 1 5.6743 4.4421 -0.9055 36 1 5.6801 4.4467 0.8744 37 1 7.8733 -0.2377 -0.2222 38 1 5.6241 -2.0067 0.3505 39 1 5.0977 -2.3763 2.0102 40 1 4.2204 -2.2031 -1.4365 41 1 2.5531 -2.8026 -1.2661 42 1 2.9603 -1.1474 -0.7538 43 1 4.1833 -4.4689 1.4617 44 1 3.0888 -4.6430 0.0685 45 1 4.8068 -4.2582 -0.1921 46 1 2.2512 -1.3932 1.4583 47 1 1.6215 -2.9980 1.0161 48 1 2.7162 -2.8243 2.4092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001227251338.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:49 Heat of formation + Delta-G solvation = -13.417437 kcal Electronic energy + Delta-G solvation = -31599.666502 eV Core-core repulsion = 27547.597116 eV Total energy + Delta-G solvation = -4052.069386 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.185 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.66533 -41.53917 -39.85177 -39.11688 -38.35433 -36.00191 -34.77613 -31.69411 -30.60339 -29.86950 -29.44909 -29.32670 -28.65110 -27.69917 -27.22276 -24.68788 -23.44591 -22.92471 -22.30928 -20.15792 -19.29671 -18.62285 -17.93352 -17.88459 -17.72960 -17.47609 -17.33560 -17.31552 -16.72997 -16.54234 -16.33737 -15.81296 -15.76465 -15.14993 -14.87749 -14.64124 -14.37798 -14.13252 -13.76516 -13.65362 -13.25117 -13.20982 -13.16113 -13.10198 -13.02939 -12.92343 -12.85414 -12.74065 -12.56733 -12.39353 -12.31332 -12.22580 -11.92866 -11.76219 -11.33940 -11.26725 -10.68939 -10.18827 -9.17358 -8.91504 -8.23047 -6.34189 0.17401 0.39952 1.12999 1.31350 1.43587 1.49381 1.94230 2.37327 2.43354 2.78264 2.98980 3.01452 3.20141 3.24491 3.26037 3.49990 4.03244 4.06150 4.10488 4.13609 4.19724 4.25110 4.29516 4.32992 4.38328 4.43139 4.47985 4.50159 4.50999 4.56379 4.60363 4.62208 4.75015 4.83412 4.84643 4.87140 4.91293 4.97099 5.24727 5.26371 5.35462 5.38105 5.42577 5.70742 6.00950 6.19487 6.43012 6.61000 6.79516 7.15315 7.46962 8.77681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.305 6.305 3 C 0.151 3.849 4 C -0.261 4.261 5 C 0.166 3.834 6 O -0.507 6.507 7 C -0.280 4.280 8 C 0.156 3.844 9 O -0.285 6.285 10 C 0.017 3.983 11 C 0.026 3.974 12 O -0.305 6.305 13 C 0.202 3.798 14 H 0.042 0.958 15 C -0.563 4.563 16 H 0.038 0.962 17 C 0.103 3.897 18 N -0.854 5.854 19 Si 0.896 3.104 20 H -0.286 1.286 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.021 3.979 24 N -0.256 5.256 25 C -0.044 4.044 26 C -0.042 4.042 27 C -0.053 4.053 28 H 0.136 0.864 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.158 0.842 32 H 0.413 0.587 33 H 0.136 0.864 34 H 0.089 0.911 35 H 0.069 0.931 36 H 0.056 0.944 37 H 0.263 0.737 38 H 0.131 0.869 39 H 0.128 0.872 40 H 0.093 0.907 41 H 0.134 0.866 42 H 0.123 0.877 43 H 0.123 0.877 44 H 0.141 0.859 45 H 0.108 0.892 46 H 0.100 0.900 47 H 0.144 0.856 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.948 -12.774 -3.576 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.218 6.218 3 C 0.104 3.896 4 C -0.280 4.280 5 C 0.121 3.879 6 O -0.321 6.321 7 C -0.299 4.299 8 C 0.108 3.892 9 O -0.197 6.197 10 C -0.078 4.078 11 C -0.020 4.020 12 O -0.223 6.223 13 C 0.148 3.852 14 H 0.060 0.940 15 C -0.600 4.600 16 H 0.056 0.944 17 C -0.105 4.105 18 N -0.489 5.489 19 Si 0.726 3.274 20 H -0.212 1.212 21 H -0.213 1.213 22 H -0.214 1.214 23 C -0.100 4.100 24 N 0.087 4.913 25 C -0.186 4.186 26 C -0.183 4.183 27 C -0.194 4.194 28 H 0.154 0.846 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.175 0.825 32 H 0.273 0.727 33 H 0.154 0.846 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.149 0.851 39 H 0.146 0.854 40 H 0.112 0.888 41 H 0.152 0.848 42 H 0.141 0.859 43 H 0.141 0.859 44 H 0.159 0.841 45 H 0.127 0.873 46 H 0.119 0.881 47 H 0.162 0.838 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -14.458 -13.330 -3.276 19.936 hybrid contribution 1.362 2.094 0.290 2.515 sum -13.096 -11.236 -2.986 17.512 Atomic orbital electron populations 1.23471 0.76247 1.06334 1.02208 1.85953 1.23154 1.24442 1.88282 1.18564 0.89728 0.85469 0.95803 1.21342 1.01514 0.90694 1.14495 1.17867 0.88167 0.85999 0.95890 1.84752 1.72057 1.39706 1.35600 1.21454 0.94744 0.98163 1.15585 1.19174 0.83473 0.93252 0.93315 1.86483 1.16437 1.29710 1.87035 1.23182 0.99145 0.83628 1.01818 1.17084 0.86780 0.86214 1.11957 1.86312 1.70202 1.34305 1.31436 1.20171 0.94342 0.88636 0.82076 0.94014 1.21316 0.95459 1.37616 1.05639 0.94398 1.24735 0.98446 0.93402 0.93930 1.69679 1.23126 1.42013 1.14073 0.86553 0.82024 0.79758 0.79098 1.21158 1.21323 1.21367 1.24034 0.88765 0.92341 1.04814 1.45927 1.14912 1.15234 1.15237 1.24360 1.06181 1.06734 0.81282 1.24191 1.08005 0.77003 1.09095 1.24291 0.89312 1.08222 0.97549 0.84563 0.92326 0.92059 0.82462 0.72695 0.84577 0.89243 0.91205 0.92524 0.92736 0.85138 0.85417 0.88780 0.84776 0.85931 0.85873 0.84088 0.87344 0.88125 0.83755 0.85919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.15 9.81 113.37 1.11 0.96 16 2 O -0.30 2.05 5.68 -79.48 -0.45 1.60 16 3 C 0.15 0.39 6.64 22.54 0.15 0.53 16 4 C -0.26 -0.62 8.97 22.47 0.20 -0.42 16 5 C 0.17 1.04 6.70 22.48 0.15 1.19 16 6 O -0.51 -1.69 13.50 -93.16 -1.26 -2.95 16 7 C -0.28 -2.81 8.97 22.47 0.20 -2.60 16 8 C 0.16 2.18 6.59 22.54 0.15 2.33 16 9 O -0.29 -5.18 8.70 -79.47 -0.69 -5.87 16 10 C 0.02 0.20 9.81 113.37 1.11 1.32 16 11 C 0.03 0.26 5.43 22.62 0.12 0.38 16 12 O -0.31 -2.74 5.75 -71.24 -0.41 -3.14 16 13 C 0.20 1.34 1.88 29.85 0.06 1.40 16 14 H 0.04 0.16 5.71 -2.39 -0.01 0.15 16 15 C -0.56 -10.56 8.02 25.60 0.21 -10.36 16 16 H 0.04 0.90 7.81 -2.91 -0.02 0.88 16 17 C 0.10 2.22 4.32 84.66 0.37 2.58 16 18 N -0.85 -17.84 10.95 21.45 0.23 -17.60 16 19 Si 0.90 20.63 29.54 68.60 2.03 22.66 16 20 H -0.29 -7.19 7.11 99.48 0.71 -6.48 16 21 H -0.29 -6.81 7.11 99.48 0.71 -6.11 16 22 H -0.29 -7.04 7.11 99.48 0.71 -6.34 16 23 C 0.02 -0.09 3.56 86.30 0.31 0.22 16 24 N -0.26 4.41 0.05 ******* -0.07 4.34 16 25 C -0.04 0.64 7.26 127.69 0.93 1.57 16 26 C -0.04 1.04 8.00 127.69 1.02 2.06 16 27 C -0.05 1.08 7.36 127.69 0.94 2.02 16 28 H 0.14 -2.79 8.14 -2.39 -0.02 -2.81 16 29 H 0.06 -0.71 7.65 -2.39 -0.02 -0.73 16 30 H 0.06 -0.77 7.67 -2.38 -0.02 -0.79 16 31 H 0.16 -0.47 6.29 -2.91 -0.02 -0.49 16 32 H 0.41 -2.73 9.06 -74.06 -0.67 -3.40 16 33 H 0.14 1.13 6.29 -2.91 -0.02 1.12 16 34 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 36 H 0.06 0.56 7.66 -2.39 -0.02 0.54 16 37 H 0.26 5.94 8.31 -92.71 -0.77 5.17 16 38 H 0.13 0.33 6.09 -2.39 -0.01 0.31 16 39 H 0.13 -0.81 8.06 -2.39 -0.02 -0.83 16 40 H 0.09 -0.93 7.95 -2.38 -0.02 -0.95 16 41 H 0.13 -3.06 8.04 -2.39 -0.02 -3.08 16 42 H 0.12 -0.93 2.70 -2.39 -0.01 -0.93 16 43 H 0.12 -3.23 8.10 -2.39 -0.02 -3.25 16 44 H 0.14 -4.30 8.09 -2.39 -0.02 -4.32 16 45 H 0.11 -2.42 8.14 -2.39 -0.02 -2.44 16 46 H 0.10 -1.37 3.60 -2.39 -0.01 -1.38 16 47 H 0.14 -4.06 8.14 -2.39 -0.02 -4.08 16 48 H 0.12 -2.79 8.14 -2.38 -0.02 -2.81 16 Total: 0.00 -46.00 366.28 6.72 -39.29 By element: Atomic # 1 Polarization: -41.80 SS G_CDS: 0.31 Total: -41.49 kcal Atomic # 6 Polarization: -3.85 SS G_CDS: 7.02 Total: 3.17 kcal Atomic # 7 Polarization: -13.43 SS G_CDS: 0.17 Total: -13.26 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -2.81 Total: -10.36 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: 2.03 Total: 22.66 kcal Total: -46.00 6.72 -39.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227251338.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.869 kcal (2) G-P(sol) polarization free energy of solvation -46.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds