Wall clock time and date at job start Tue Mar 31 2020 14:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81407 * 102.99854 * 2 1 4 4 C 1.53005 * 109.46737 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.46479 * 180.02562 * 4 3 2 6 6 O 1.21279 * 120.00550 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99484 * 179.72541 * 5 4 3 8 8 C 1.46921 * 120.63092 * 359.71586 * 7 5 4 9 9 C 1.53627 * 108.53898 * 126.36795 * 8 7 5 10 10 C 1.53042 * 109.24151 * 54.85949 * 9 8 7 11 11 C 1.52998 * 109.44973 * 178.49180 * 10 9 8 12 12 H 1.09004 * 109.87448 * 182.30785 * 11 10 9 13 13 C 1.54329 * 109.87993 * 61.29968 * 11 10 9 14 14 C 1.55159 * 102.94125 * 218.38610 * 13 11 10 15 15 C 1.54916 * 101.57953 * 35.50224 * 14 13 11 16 16 N 1.47018 * 109.88542 * 303.48928 * 11 10 9 17 17 C 1.36939 * 125.64897 * 298.33555 * 16 11 10 18 18 H 1.07999 * 120.00084 * 345.40773 * 17 16 11 19 19 C 1.38812 * 119.99872 * 165.40567 * 17 16 11 20 20 N 1.31621 * 120.00260 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99819 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.46890 * 90.00222 * 21 19 17 23 23 H 1.48504 * 109.47054 * 210.00118 * 21 19 17 24 24 H 1.48507 * 109.46918 * 330.00044 * 21 19 17 25 25 C 1.53036 * 109.53853 * 298.51195 * 10 9 8 26 26 C 1.46920 * 120.62866 * 180.02562 * 7 5 4 27 27 H 1.08994 * 109.47393 * 59.99865 * 1 2 3 28 28 H 1.09003 * 109.47009 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46733 * 299.99758 * 1 2 3 30 30 H 1.08999 * 109.46515 * 60.00527 * 3 2 1 31 31 H 1.08986 * 109.47181 * 300.00274 * 3 2 1 32 32 H 1.08990 * 109.47113 * 60.00265 * 4 3 2 33 33 H 1.08996 * 109.46930 * 300.00016 * 4 3 2 34 34 H 1.08995 * 109.59013 * 246.20276 * 8 7 5 35 35 H 1.09003 * 109.58708 * 6.63533 * 8 7 5 36 36 H 1.08993 * 109.63937 * 294.86558 * 9 8 7 37 37 H 1.09002 * 109.43073 * 174.72251 * 9 8 7 38 38 H 1.09006 * 109.45950 * 58.52802 * 10 9 8 39 39 H 1.08995 * 110.71611 * 336.75036 * 13 11 10 40 40 H 1.09002 * 110.72154 * 99.84616 * 13 11 10 41 41 H 1.08996 * 111.00032 * 153.57176 * 14 13 11 42 42 H 1.08992 * 111.00591 * 277.42626 * 14 13 11 43 43 H 1.09001 * 110.36298 * 81.82810 * 15 14 13 44 44 H 1.08993 * 110.36335 * 204.04017 * 15 14 13 45 45 H 0.96995 * 120.00007 * 179.97438 * 20 19 17 46 46 H 1.09005 * 109.49244 * 301.41339 * 25 10 9 47 47 H 1.08993 * 109.49992 * 181.31814 * 25 10 9 48 48 H 1.09001 * 109.58666 * 353.36629 * 26 7 5 49 49 H 1.08998 * 109.58910 * 113.65402 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2220 1.7676 0.0000 4 6 3.7423 1.9400 -0.0006 5 6 4.0812 3.4084 0.0000 6 8 3.1943 4.2355 0.0013 7 7 5.3702 3.8024 0.0052 8 6 6.4556 2.8123 0.0165 9 6 7.4051 3.1151 -1.1526 10 6 7.8784 4.5672 -1.0549 11 6 8.8540 4.8629 -2.1959 12 1 9.2271 5.8834 -2.1093 13 6 8.1450 4.6769 -3.5540 14 6 9.2455 4.0279 -4.4344 15 6 9.9788 3.1317 -3.4053 16 7 9.9746 3.9122 -2.1546 17 6 10.8671 3.7747 -1.1252 18 1 10.9333 4.5365 -0.3625 19 6 11.6868 2.6563 -1.0620 20 7 11.6066 1.7281 -1.9917 21 14 12.9038 2.4684 0.3428 22 1 12.2541 1.7487 1.4675 23 1 14.0831 1.6959 -0.1240 24 1 13.3416 3.8113 0.8013 25 6 6.6742 5.5060 -1.1574 26 6 5.7164 5.2303 0.0064 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8031 2.2371 0.8901 31 1 1.8031 2.2371 -0.8898 32 1 4.1608 1.4705 -0.8908 33 1 4.1616 1.4703 0.8891 34 1 6.9995 2.8771 0.9588 35 1 6.0388 1.8118 -0.0992 36 1 6.8824 2.9656 -2.0973 37 1 8.2657 2.4479 -1.1030 38 1 8.3795 4.7223 -0.0994 39 1 7.2885 4.0103 -3.4537 40 1 7.8373 5.6391 -3.9634 41 1 8.8053 3.4282 -5.2311 42 1 9.9163 4.7842 -4.8420 43 1 9.4414 2.1933 -3.2687 44 1 11.0010 2.9389 -3.7307 45 1 12.1796 0.9467 -1.9477 46 1 6.1582 5.3340 -2.1021 47 1 7.0144 6.5405 -1.1113 48 1 4.8116 5.8257 -0.1159 49 1 6.1991 5.4884 0.9490 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230508533.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:55 Heat of formation + Delta-G solvation = -23.853073 kcal Electronic energy + Delta-G solvation = -26847.968632 eV Core-core repulsion = 23322.262517 eV Total energy + Delta-G solvation = -3525.706115 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.23908 -38.48440 -36.36914 -33.43856 -32.84520 -32.08863 -30.71957 -29.34582 -29.26128 -27.74909 -25.25547 -24.57888 -23.49957 -22.74444 -21.16171 -20.06134 -19.26230 -18.24075 -17.39030 -16.60503 -16.08686 -15.95050 -15.89095 -15.09213 -14.69348 -14.47875 -14.17893 -13.95067 -13.91309 -13.79596 -13.62642 -13.37056 -12.92601 -12.59542 -12.52142 -12.32119 -12.13002 -11.89097 -11.81861 -11.62668 -11.44758 -11.26567 -10.96204 -10.92546 -10.81027 -10.47194 -10.26973 -10.16484 -10.07435 -9.85108 -9.79342 -9.65656 -9.58158 -9.44170 -8.60024 -8.49840 -7.95862 -6.76390 -5.75299 -3.09989 1.35284 2.29849 2.61094 3.10155 3.36868 3.43508 3.44529 4.47265 4.50339 4.57429 4.70319 4.82994 4.84935 5.02959 5.12022 5.25792 5.28554 5.37683 5.38893 5.43372 5.46452 5.48363 5.59390 5.64269 5.67108 5.71736 5.80785 5.86099 5.92541 5.99985 6.19007 6.20056 6.30850 6.37995 6.47882 6.52463 6.59905 6.65189 6.77236 6.96524 7.03459 7.15522 7.46353 7.55353 7.63215 7.80564 8.15709 8.28695 9.20364 9.81772 10.51660 11.36622 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.003082 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.436329 B = 9083.911979 C = 9668.639122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 S -0.267 6.267 3 C -0.065 4.065 4 C -0.126 4.126 5 C 0.520 3.480 6 O -0.555 6.555 7 N -0.603 5.603 8 C 0.103 3.897 9 C -0.118 4.118 10 C -0.091 4.091 11 C 0.166 3.834 12 H 0.030 0.970 13 C -0.127 4.127 14 C -0.151 4.151 15 C 0.175 3.825 16 N -0.592 5.592 17 C -0.223 4.223 18 H 0.072 0.928 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.905 3.095 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.128 4.128 26 C 0.113 3.887 27 H 0.077 0.923 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.024 0.976 44 H 0.067 0.933 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.085 0.915 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.033 0.498 1.958 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.288 4.288 2 S -0.041 6.041 3 C -0.214 4.214 4 C -0.167 4.167 5 C 0.307 3.693 6 O -0.434 6.434 7 N -0.336 5.336 8 C -0.019 4.019 9 C -0.156 4.156 10 C -0.112 4.112 11 C 0.059 3.941 12 H 0.048 0.952 13 C -0.165 4.165 14 C -0.190 4.190 15 C 0.050 3.950 16 N -0.316 5.316 17 C -0.352 4.352 18 H 0.090 0.910 19 C -0.200 4.200 20 N -0.563 5.563 21 Si 0.736 3.264 22 H -0.216 1.216 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.167 4.167 26 C -0.009 4.009 27 H 0.096 0.904 28 H 0.119 0.881 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.120 0.880 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -16.636 -0.109 2.019 16.759 hybrid contribution -0.053 0.779 0.794 1.114 sum -16.689 0.669 2.813 16.938 Atomic orbital electron populations 1.23361 0.93913 1.06455 1.05045 1.86888 1.07687 1.11402 1.98140 1.23095 0.98469 0.93476 1.06355 1.21390 0.94992 0.94493 1.05786 1.20390 0.82331 0.90645 0.75964 1.90663 1.46712 1.54749 1.51243 1.48190 1.05497 1.07877 1.72047 1.22061 0.88248 0.91071 1.00569 1.21946 0.99067 0.98506 0.96033 1.21559 0.94573 0.93801 1.01285 1.20921 0.87755 0.93665 0.91770 0.95202 1.22640 0.98024 0.99541 0.96249 1.23017 0.97850 0.99880 0.98203 1.21386 0.99031 0.91223 0.83364 1.44476 1.28690 1.41436 1.17020 1.18918 1.12156 1.02367 1.01773 0.91022 1.24847 1.00572 0.96219 0.98399 1.69932 1.41624 1.10810 1.33973 0.86230 0.80711 0.77549 0.81937 1.21597 1.21801 1.20786 1.22005 0.96599 1.00128 0.97978 1.21622 0.99521 0.80849 0.98934 0.90408 0.88053 0.90451 0.89355 0.89290 0.87748 0.87957 0.91111 0.90219 0.92394 0.88230 0.91395 0.91703 0.92834 0.92691 0.92608 0.95778 0.91449 0.93770 0.91753 0.91254 0.89626 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.76 101.05 1.09 0.25 16 2 S -0.27 -2.69 22.38 -107.50 -2.41 -5.10 16 3 C -0.07 -0.68 5.23 37.16 0.19 -0.49 16 4 C -0.13 -1.36 4.05 -27.88 -0.11 -1.47 16 5 C 0.52 7.07 7.70 -10.98 -0.08 6.99 16 6 O -0.55 -9.07 15.40 5.56 0.09 -8.98 16 7 N -0.60 -8.10 2.97 -172.48 -0.51 -8.62 16 8 C 0.10 1.37 6.37 -3.49 -0.02 1.35 16 9 C -0.12 -1.91 4.95 -26.38 -0.13 -2.04 16 10 C -0.09 -1.50 1.91 -90.58 -0.17 -1.68 16 11 C 0.17 3.15 2.97 -66.95 -0.20 2.95 16 12 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.13 -2.12 5.20 -24.89 -0.13 -2.25 16 14 C -0.15 -2.76 7.09 -24.58 -0.17 -2.93 16 15 C 0.17 3.99 5.41 -2.53 -0.01 3.98 16 16 N -0.59 -13.75 2.21 -162.57 -0.36 -14.11 16 17 C -0.22 -5.76 9.87 -15.06 -0.15 -5.91 16 18 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 19 C 0.00 -0.09 5.47 -17.43 -0.10 -0.19 16 20 N -0.92 -25.48 10.57 55.49 0.59 -24.89 16 21 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.13 -1.76 5.08 -26.59 -0.14 -1.90 16 26 C 0.11 1.50 6.43 -3.69 -0.02 1.48 16 27 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.09 0.94 8.10 -51.92 -0.42 0.52 16 31 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 32 H 0.10 1.08 7.72 -51.93 -0.40 0.68 16 33 H 0.10 1.00 7.92 -51.93 -0.41 0.59 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.92 5.93 -51.93 -0.31 0.61 16 36 H 0.06 0.94 6.20 -51.93 -0.32 0.61 16 37 H 0.10 2.01 7.49 -51.93 -0.39 1.63 16 38 H 0.07 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.06 1.05 5.50 -51.93 -0.29 0.77 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.59 8.06 -51.93 -0.42 0.17 16 44 H 0.07 1.75 6.93 -51.93 -0.36 1.39 16 45 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 46 H 0.06 0.90 7.02 -51.93 -0.36 0.54 16 47 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 49 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -29.00 384.48 -10.65 -39.65 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.66 Total: 1.92 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.16 Total: -1.86 kcal Atomic # 7 Polarization: -47.33 SS G_CDS: -0.28 Total: -47.62 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.98 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Atomic # 16 Polarization: -2.69 SS G_CDS: -2.41 Total: -5.10 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.00 -10.65 -39.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230508533.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.797 kcal (2) G-P(sol) polarization free energy of solvation -28.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds