Wall clock time and date at job start Tue Mar 31 2020 14:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00043 * 2 1 4 4 C 1.53003 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46701 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00076 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99819 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.63219 * 179.97438 * 7 5 4 9 9 C 1.53198 * 108.77325 * 233.62670 * 8 7 5 10 10 C 1.53041 * 109.31210 * 305.36383 * 9 8 7 11 11 C 1.53000 * 109.45607 * 181.38572 * 10 9 8 12 12 H 1.09000 * 109.99768 * 179.03808 * 11 10 9 13 13 C 1.54313 * 109.77755 * 300.18983 * 11 10 9 14 14 C 1.55159 * 102.86390 * 141.88443 * 13 11 10 15 15 C 1.54903 * 101.58419 * 324.30948 * 14 13 11 16 16 N 1.47024 * 109.88590 * 57.94280 * 11 10 9 17 17 C 1.36937 * 125.64507 * 61.67144 * 16 11 10 18 18 H 1.07993 * 120.00272 * 14.13060 * 17 16 11 19 19 C 1.38818 * 119.99536 * 194.40039 * 17 16 11 20 20 N 1.31615 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99548 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47203 * 90.00339 * 21 19 17 23 23 H 1.48505 * 109.47174 * 209.99954 * 21 19 17 24 24 H 1.48497 * 109.47573 * 330.00267 * 21 19 17 25 25 C 1.53039 * 109.53772 * 61.36541 * 10 9 8 26 26 C 1.46932 * 120.63083 * 0.02562 * 7 5 4 27 27 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46955 * 300.00057 * 1 2 3 29 29 H 1.08998 * 109.47154 * 60.00154 * 1 2 3 30 30 H 1.08994 * 109.46965 * 59.99798 * 3 2 1 31 31 H 1.09004 * 109.46983 * 299.99788 * 3 2 1 32 32 H 1.09000 * 109.46846 * 59.99687 * 4 3 2 33 33 H 1.08996 * 109.46861 * 299.99518 * 4 3 2 34 34 H 1.08998 * 109.59168 * 113.84134 * 8 7 5 35 35 H 1.08994 * 109.58706 * 353.40775 * 8 7 5 36 36 H 1.08998 * 109.49300 * 185.40962 * 9 8 7 37 37 H 1.09003 * 109.49908 * 65.31420 * 9 8 7 38 38 H 1.08993 * 109.45981 * 301.35867 * 10 9 8 39 39 H 1.09006 * 110.92353 * 23.47721 * 13 11 10 40 40 H 1.08999 * 110.59202 * 260.15102 * 13 11 10 41 41 H 1.08998 * 111.00280 * 206.22858 * 14 13 11 42 42 H 1.09000 * 111.03266 * 82.39848 * 14 13 11 43 43 H 1.08999 * 110.36340 * 278.16904 * 15 14 13 44 44 H 1.08998 * 110.46166 * 155.89202 * 15 14 13 45 45 H 0.96990 * 120.00209 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.49554 * 58.58823 * 25 10 9 47 47 H 1.09000 * 109.49579 * 178.67873 * 25 10 9 48 48 H 1.08996 * 109.58933 * 246.16307 * 26 7 5 49 49 H 1.09005 * 109.58511 * 6.44174 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0813 3.4083 0.0013 6 8 3.1943 4.2353 0.0008 7 7 5.3702 3.8024 0.0014 8 6 5.7164 5.2302 0.0014 9 6 6.6687 5.5066 -1.1664 10 6 7.8734 4.5677 -1.0702 11 6 8.8435 4.8645 -2.2155 12 1 9.7136 4.2117 -2.1456 13 6 8.1334 4.6535 -3.5692 14 6 8.7028 5.8038 -4.4410 15 6 8.8417 6.9431 -3.4007 16 7 9.2679 6.2710 -2.1597 17 6 9.9510 6.8581 -1.1282 18 1 10.4205 6.2450 -0.3733 19 6 10.0351 8.2415 -1.0499 20 7 9.4579 8.9889 -1.9668 21 14 10.9675 9.0423 0.3567 22 1 12.3888 9.2264 -0.0328 23 1 10.3630 10.3639 0.6624 24 1 10.8922 8.1736 1.5587 25 6 7.3996 3.1157 -1.1666 26 6 6.4558 2.8122 0.0003 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8031 2.2371 0.8899 31 1 1.8032 2.2371 -0.8900 32 1 4.1616 1.4701 -0.8891 33 1 4.1608 1.4705 0.8909 34 1 6.2059 5.4876 0.9407 35 1 4.8112 5.8257 -0.1165 36 1 7.0091 6.5411 -1.1211 37 1 6.1482 5.3353 -2.1086 38 1 8.3789 4.7220 -0.1170 39 1 7.0530 4.7501 -3.4613 40 1 8.3946 3.6834 -3.9921 41 1 8.0034 6.0787 -5.2305 42 1 9.6734 5.5350 -4.8580 43 1 7.8833 7.4406 -3.2528 44 1 9.5960 7.6618 -3.7211 45 1 9.5171 9.9555 -1.9123 46 1 6.8722 2.9669 -2.1089 47 1 8.2603 2.4485 -1.1217 48 1 7.0056 2.8717 0.9396 49 1 6.0380 1.8121 -0.1157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230508536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:59 Heat of formation + Delta-G solvation = -23.349951 kcal Electronic energy + Delta-G solvation = -26766.708507 eV Core-core repulsion = 23241.024208 eV Total energy + Delta-G solvation = -3525.684298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.24327 -38.48155 -36.39573 -33.39322 -32.89232 -32.08590 -30.77050 -29.37282 -29.28411 -27.71759 -25.30316 -24.52266 -23.61992 -22.64644 -21.19092 -20.06911 -19.24664 -18.24950 -17.40876 -16.62726 -16.14022 -16.01378 -15.80267 -15.10753 -14.68673 -14.49707 -14.21709 -13.92032 -13.88626 -13.87926 -13.65484 -13.38061 -12.94916 -12.61232 -12.53586 -12.35569 -12.13172 -11.91624 -11.83556 -11.67714 -11.48331 -11.21579 -10.97830 -10.87545 -10.80128 -10.38731 -10.33688 -10.19891 -10.08841 -9.88806 -9.75005 -9.66344 -9.53548 -9.43347 -8.58270 -8.49015 -8.02116 -6.75139 -5.73544 -3.08261 1.30081 2.23933 2.61335 3.09825 3.38369 3.44281 3.45809 4.44088 4.48790 4.52958 4.65231 4.79196 4.80583 4.89515 5.10265 5.20073 5.23563 5.35177 5.40008 5.41040 5.46289 5.47755 5.57702 5.59939 5.72139 5.75354 5.78071 5.89519 5.92453 6.00799 6.15771 6.23069 6.29814 6.37443 6.50031 6.55747 6.59369 6.65100 6.77892 7.00643 7.06599 7.17484 7.47055 7.56692 7.64932 7.82098 8.17061 8.30386 9.21818 9.83385 10.53102 11.38507 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.002744 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.019758 B =10201.709596 C =10748.610819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.270 6.270 3 C -0.066 4.066 4 C -0.124 4.124 5 C 0.518 3.482 6 O -0.549 6.549 7 N -0.604 5.604 8 C 0.111 3.889 9 C -0.116 4.116 10 C -0.092 4.092 11 C 0.167 3.833 12 H 0.030 0.970 13 C -0.127 4.127 14 C -0.151 4.151 15 C 0.174 3.826 16 N -0.592 5.592 17 C -0.224 4.224 18 H 0.072 0.928 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 C -0.130 4.130 26 C 0.106 3.894 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.056 0.944 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.053 0.947 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.024 0.976 44 H 0.067 0.933 45 H 0.252 0.748 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.069 0.931 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.936 -17.014 1.906 20.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 S -0.045 6.045 3 C -0.215 4.215 4 C -0.165 4.165 5 C 0.304 3.696 6 O -0.427 6.427 7 N -0.337 5.337 8 C -0.011 4.011 9 C -0.154 4.154 10 C -0.113 4.113 11 C 0.059 3.941 12 H 0.048 0.952 13 C -0.165 4.165 14 C -0.190 4.190 15 C 0.049 3.951 16 N -0.316 5.316 17 C -0.352 4.352 18 H 0.090 0.910 19 C -0.201 4.201 20 N -0.563 5.563 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 C -0.169 4.169 26 C -0.017 4.017 27 H 0.119 0.881 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.042 0.958 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.682 -17.205 1.981 20.890 hybrid contribution -0.249 1.471 0.786 1.686 sum -11.931 -15.734 2.767 19.939 Atomic orbital electron populations 1.23360 0.93708 1.06456 1.05161 1.86764 1.07960 1.11578 1.98162 1.23108 0.98473 0.93339 1.06537 1.21382 0.95051 0.94615 1.05457 1.20376 0.82435 0.90562 0.76257 1.90687 1.46593 1.54715 1.50746 1.48190 1.05153 1.08152 1.72170 1.21766 0.99928 0.79722 0.99686 1.21867 0.94716 1.02505 0.96328 1.21561 0.96494 0.91841 1.01357 1.20922 0.93155 0.88255 0.91746 0.95184 1.22656 0.99867 0.97723 0.96277 1.23013 0.99389 0.98296 0.98252 1.21393 0.98824 0.91448 0.83411 1.44477 1.64798 1.04712 1.17657 1.18913 1.25016 0.89304 1.02012 0.90984 1.24859 1.00494 0.96245 0.98490 1.69928 1.47689 1.04079 1.34646 0.86223 0.79249 0.78906 0.81997 1.21719 1.21747 1.20728 1.21997 0.98517 0.98660 0.97728 1.21805 0.88731 0.91325 0.99815 0.88056 0.90391 0.90344 0.89269 0.89197 0.87945 0.88098 0.91634 0.89599 0.88479 0.92510 0.91339 0.91583 0.92838 0.92703 0.92602 0.95775 0.91440 0.93761 0.91656 0.91058 0.91275 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 10.76 101.05 1.09 0.32 16 2 S -0.27 -2.47 22.38 -107.50 -2.41 -4.87 16 3 C -0.07 -0.65 5.23 37.16 0.19 -0.46 16 4 C -0.12 -1.21 4.05 -27.88 -0.11 -1.32 16 5 C 0.52 7.00 7.70 -10.99 -0.08 6.91 16 6 O -0.55 -9.38 15.39 5.56 0.09 -9.29 16 7 N -0.60 -8.09 2.97 -172.81 -0.51 -8.60 16 8 C 0.11 1.74 6.43 -3.71 -0.02 1.72 16 9 C -0.12 -2.03 4.93 -26.61 -0.13 -2.16 16 10 C -0.09 -1.51 1.91 -90.58 -0.17 -1.69 16 11 C 0.17 3.16 2.96 -66.96 -0.20 2.96 16 12 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 13 C -0.13 -2.13 5.20 -24.90 -0.13 -2.26 16 14 C -0.15 -2.80 7.08 -24.59 -0.17 -2.97 16 15 C 0.17 4.07 5.42 -2.53 -0.01 4.05 16 16 N -0.59 -13.99 2.28 -162.58 -0.37 -14.36 16 17 C -0.22 -5.86 9.85 -15.06 -0.15 -6.01 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C 0.00 -0.11 5.47 -17.43 -0.10 -0.20 16 20 N -0.92 -26.06 10.58 55.49 0.59 -25.47 16 21 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 C -0.13 -1.62 5.10 -26.65 -0.14 -1.75 16 26 C 0.11 1.15 6.34 -3.74 -0.02 1.13 16 27 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 31 H 0.09 0.95 8.10 -51.92 -0.42 0.53 16 32 H 0.10 0.89 7.69 -51.93 -0.40 0.49 16 33 H 0.10 0.84 7.94 -51.93 -0.41 0.43 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 35 H 0.09 1.45 7.00 -51.93 -0.36 1.09 16 36 H 0.10 2.10 7.53 -51.93 -0.39 1.71 16 37 H 0.06 1.00 6.12 -51.93 -0.32 0.68 16 38 H 0.07 1.25 8.04 -51.93 -0.42 0.83 16 39 H 0.07 1.09 5.51 -51.93 -0.29 0.80 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.61 8.06 -51.93 -0.42 0.19 16 44 H 0.07 1.78 6.93 -51.93 -0.36 1.42 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 46 H 0.06 0.81 7.11 -51.93 -0.37 0.44 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 49 H 0.08 0.65 5.93 -51.93 -0.31 0.35 16 LS Contribution 384.50 15.07 5.79 5.79 Total: -1.00 -29.96 384.50 -10.67 -40.62 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -8.66 Total: 1.35 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.16 Total: -1.73 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: -0.30 Total: -48.44 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: 0.09 Total: -9.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -2.47 SS G_CDS: -2.41 Total: -4.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.96 -10.67 -40.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230508536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.274 kcal (2) G-P(sol) polarization free energy of solvation -29.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds