Wall clock time and date at job start Tue Mar 31 2020 14:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81400 * 103.00043 * 2 1 4 4 C 1.53003 * 109.47013 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.46701 * 180.02562 * 4 3 2 6 6 O 1.21276 * 120.00076 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99819 * 180.02562 * 5 4 3 8 8 C 1.46923 * 120.63219 * 179.97438 * 7 5 4 9 9 C 1.53198 * 108.77325 * 233.62670 * 8 7 5 10 10 C 1.53041 * 109.31210 * 305.36383 * 9 8 7 11 11 C 1.53000 * 109.45607 * 181.38572 * 10 9 8 12 12 H 1.09000 * 109.99768 * 179.03808 * 11 10 9 13 13 C 1.54313 * 109.77755 * 300.18983 * 11 10 9 14 14 C 1.55159 * 102.86390 * 141.88443 * 13 11 10 15 15 C 1.54903 * 101.58419 * 324.30948 * 14 13 11 16 16 N 1.47024 * 109.88590 * 57.94280 * 11 10 9 17 17 C 1.36937 * 125.64507 * 61.67144 * 16 11 10 18 18 H 1.07993 * 120.00272 * 14.13060 * 17 16 11 19 19 C 1.38818 * 119.99536 * 194.40039 * 17 16 11 20 20 N 1.31615 * 120.00410 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99548 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.47203 * 90.00339 * 21 19 17 23 23 H 1.48505 * 109.47174 * 209.99954 * 21 19 17 24 24 H 1.48497 * 109.47573 * 330.00267 * 21 19 17 25 25 C 1.53039 * 109.53772 * 61.36541 * 10 9 8 26 26 C 1.46932 * 120.63083 * 0.02562 * 7 5 4 27 27 H 1.09000 * 109.47241 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.46955 * 300.00057 * 1 2 3 29 29 H 1.08998 * 109.47154 * 60.00154 * 1 2 3 30 30 H 1.08994 * 109.46965 * 59.99798 * 3 2 1 31 31 H 1.09004 * 109.46983 * 299.99788 * 3 2 1 32 32 H 1.09000 * 109.46846 * 59.99687 * 4 3 2 33 33 H 1.08996 * 109.46861 * 299.99518 * 4 3 2 34 34 H 1.08998 * 109.59168 * 113.84134 * 8 7 5 35 35 H 1.08994 * 109.58706 * 353.40775 * 8 7 5 36 36 H 1.08998 * 109.49300 * 185.40962 * 9 8 7 37 37 H 1.09003 * 109.49908 * 65.31420 * 9 8 7 38 38 H 1.08993 * 109.45981 * 301.35867 * 10 9 8 39 39 H 1.09006 * 110.92353 * 23.47721 * 13 11 10 40 40 H 1.08999 * 110.59202 * 260.15102 * 13 11 10 41 41 H 1.08998 * 111.00280 * 206.22858 * 14 13 11 42 42 H 1.09000 * 111.03266 * 82.39848 * 14 13 11 43 43 H 1.08999 * 110.36340 * 278.16904 * 15 14 13 44 44 H 1.08998 * 110.46166 * 155.89202 * 15 14 13 45 45 H 0.96990 * 120.00209 * 180.02562 * 20 19 17 46 46 H 1.09004 * 109.49554 * 58.58823 * 25 10 9 47 47 H 1.09000 * 109.49579 * 178.67873 * 25 10 9 48 48 H 1.08996 * 109.58933 * 246.16307 * 26 7 5 49 49 H 1.09005 * 109.58511 * 6.44174 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 0.0006 5 6 4.0813 3.4083 0.0013 6 8 3.1943 4.2353 0.0008 7 7 5.3702 3.8024 0.0014 8 6 5.7164 5.2302 0.0014 9 6 6.6687 5.5066 -1.1664 10 6 7.8734 4.5677 -1.0702 11 6 8.8435 4.8645 -2.2155 12 1 9.7136 4.2117 -2.1456 13 6 8.1334 4.6535 -3.5692 14 6 8.7028 5.8038 -4.4410 15 6 8.8417 6.9431 -3.4007 16 7 9.2679 6.2710 -2.1597 17 6 9.9510 6.8581 -1.1282 18 1 10.4205 6.2450 -0.3733 19 6 10.0351 8.2415 -1.0499 20 7 9.4579 8.9889 -1.9668 21 14 10.9675 9.0423 0.3567 22 1 12.3888 9.2264 -0.0328 23 1 10.3630 10.3639 0.6624 24 1 10.8922 8.1736 1.5587 25 6 7.3996 3.1157 -1.1666 26 6 6.4558 2.8122 0.0003 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8031 2.2371 0.8899 31 1 1.8032 2.2371 -0.8900 32 1 4.1616 1.4701 -0.8891 33 1 4.1608 1.4705 0.8909 34 1 6.2059 5.4876 0.9407 35 1 4.8112 5.8257 -0.1165 36 1 7.0091 6.5411 -1.1211 37 1 6.1482 5.3353 -2.1086 38 1 8.3789 4.7220 -0.1170 39 1 7.0530 4.7501 -3.4613 40 1 8.3946 3.6834 -3.9921 41 1 8.0034 6.0787 -5.2305 42 1 9.6734 5.5350 -4.8580 43 1 7.8833 7.4406 -3.2528 44 1 9.5960 7.6618 -3.7211 45 1 9.5171 9.9555 -1.9123 46 1 6.8722 2.9669 -2.1089 47 1 8.2603 2.4485 -1.1217 48 1 7.0056 2.8717 0.9396 49 1 6.0380 1.8121 -0.1157 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230508536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:58 Heat of formation + Delta-G solvation = -38.849979 kcal Electronic energy + Delta-G solvation = -26767.380638 eV Core-core repulsion = 23241.024208 eV Total energy + Delta-G solvation = -3526.356430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.38561 -39.90340 -37.74661 -34.74539 -34.22889 -33.51275 -31.91585 -31.18524 -29.81257 -29.14573 -26.65534 -26.12663 -24.84572 -23.80451 -22.52278 -21.78094 -20.51964 -19.49752 -18.68532 -18.24186 -17.04733 -16.97215 -16.83293 -16.72427 -16.33403 -15.71662 -15.43369 -15.29267 -15.16256 -14.59674 -14.47345 -14.42280 -14.12072 -13.87435 -13.80964 -13.59622 -13.41594 -13.30260 -13.06160 -12.83843 -12.78668 -12.71783 -12.60213 -12.40294 -12.11368 -12.02283 -11.83358 -11.72665 -11.48091 -11.28135 -11.17790 -11.01907 -10.90473 -10.76025 -10.60730 -9.65351 -8.70724 -8.69301 -7.80931 -5.15136 0.63497 1.45560 1.46053 1.54243 1.57862 1.60733 2.05962 2.52039 3.38086 3.55922 3.66988 3.72438 3.89509 3.93085 3.99928 4.08966 4.24867 4.25457 4.30004 4.32603 4.35855 4.37136 4.41515 4.47007 4.60797 4.67275 4.71956 4.80618 4.83090 4.85856 4.89768 4.90539 4.93673 5.08743 5.11410 5.19066 5.24056 5.28597 5.31338 5.54706 5.58949 5.68307 5.70667 5.74912 5.83338 6.31035 6.43833 7.11939 7.16990 7.87286 8.55203 9.30547 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.020583 B = 0.002744 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.019758 B =10201.709596 C =10748.610819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 S -0.284 6.284 3 C -0.062 4.062 4 C -0.113 4.113 5 C 0.514 3.486 6 O -0.592 6.592 7 N -0.603 5.603 8 C 0.119 3.881 9 C -0.102 4.102 10 C -0.083 4.083 11 C 0.157 3.843 12 H 0.035 0.965 13 C -0.114 4.114 14 C -0.140 4.140 15 C 0.180 3.820 16 N -0.609 5.609 17 C -0.220 4.220 18 H 0.076 0.924 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.964 3.036 22 H -0.289 1.289 23 H -0.301 1.301 24 H -0.269 1.269 25 C -0.121 4.121 26 C 0.105 3.895 27 H 0.116 0.884 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.062 0.938 43 H -0.009 1.009 44 H 0.026 0.974 45 H 0.243 0.757 46 H 0.073 0.927 47 H 0.095 0.905 48 H 0.077 0.923 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.289 -21.165 2.158 24.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 S -0.059 6.059 3 C -0.211 4.211 4 C -0.153 4.153 5 C 0.302 3.698 6 O -0.473 6.473 7 N -0.335 5.335 8 C -0.004 4.004 9 C -0.140 4.140 10 C -0.104 4.104 11 C 0.051 3.949 12 H 0.053 0.947 13 C -0.151 4.151 14 C -0.178 4.178 15 C 0.054 3.946 16 N -0.333 5.333 17 C -0.349 4.349 18 H 0.094 0.906 19 C -0.257 4.257 20 N -0.598 5.598 21 Si 0.794 3.206 22 H -0.216 1.216 23 H -0.228 1.228 24 H -0.194 1.194 25 C -0.160 4.160 26 C -0.017 4.017 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.009 0.991 44 H 0.045 0.955 45 H 0.052 0.948 46 H 0.092 0.908 47 H 0.114 0.886 48 H 0.095 0.905 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.019 -21.428 2.241 24.670 hybrid contribution -0.177 2.727 0.697 2.820 sum -12.196 -18.701 2.938 22.519 Atomic orbital electron populations 1.23458 0.91521 1.07636 1.05706 1.86745 1.10487 1.10479 1.98181 1.22999 0.98640 0.93925 1.05537 1.21389 0.95106 0.91431 1.07412 1.21095 0.81704 0.92012 0.74943 1.90674 1.47804 1.56288 1.52552 1.48238 1.06154 1.07237 1.71912 1.21425 0.98494 0.81799 0.98644 1.21622 0.95578 0.99838 0.96969 1.21407 0.95058 0.94790 0.99149 1.21205 0.94078 0.85434 0.94188 0.94700 1.22621 0.99637 0.98611 0.94249 1.22890 1.00586 0.96836 0.97519 1.21133 0.95693 0.92573 0.85175 1.44702 1.64712 1.06698 1.17216 1.19220 1.24017 0.89518 1.02183 0.90603 1.25572 1.02265 0.97063 1.00792 1.70141 1.49753 1.03488 1.36409 0.85281 0.77798 0.77587 0.79938 1.21643 1.22767 1.19373 1.21939 0.99818 0.95311 0.98915 1.22047 0.87826 0.92259 0.99548 0.86523 0.89848 0.89882 0.90258 0.90340 0.85864 0.85863 0.91996 0.91494 0.93738 0.92701 0.93366 0.91260 0.89061 0.90749 0.91884 0.99130 0.95511 0.94784 0.90794 0.88628 0.90468 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 10.76 113.37 1.22 0.00 16 2 S -0.28 -4.45 22.38 -56.49 -1.26 -5.72 16 3 C -0.06 -1.11 5.23 71.98 0.38 -0.73 16 4 C -0.11 -1.83 4.05 29.85 0.12 -1.71 16 5 C 0.51 13.00 7.70 87.66 0.67 13.68 16 6 O -0.59 -20.18 15.39 -3.02 -0.05 -20.23 16 7 N -0.60 -15.01 2.97 -819.03 -2.43 -17.45 16 8 C 0.12 3.82 6.43 86.37 0.56 4.38 16 9 C -0.10 -3.63 4.93 30.67 0.15 -3.48 16 10 C -0.08 -2.65 1.91 -10.77 -0.02 -2.67 16 11 C 0.16 5.74 2.96 45.34 0.13 5.88 16 12 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 13 C -0.11 -3.49 5.20 31.78 0.17 -3.33 16 14 C -0.14 -5.03 7.08 31.98 0.23 -4.80 16 15 C 0.18 8.75 5.42 86.85 0.47 9.22 16 16 N -0.61 -29.46 2.28 -668.30 -1.52 -30.98 16 17 C -0.22 -11.82 9.85 84.03 0.83 -10.99 16 18 H 0.08 3.94 7.83 -2.91 -0.02 3.91 16 19 C -0.06 -3.59 5.47 84.86 0.46 -3.13 16 20 N -0.95 -57.09 10.58 21.65 0.23 -56.86 16 21 Si 0.96 45.80 29.55 68.60 2.03 47.83 16 22 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 23 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 C -0.12 -2.53 5.10 30.65 0.16 -2.37 16 26 C 0.10 1.85 6.34 86.34 0.55 2.39 16 27 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 32 H 0.12 1.55 7.69 -2.39 -0.02 1.53 16 33 H 0.12 1.51 7.94 -2.39 -0.02 1.49 16 34 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.07 2.39 7.00 -2.39 -0.02 2.37 16 36 H 0.04 2.06 7.53 -2.39 -0.02 2.04 16 37 H 0.05 1.95 6.12 -2.39 -0.01 1.93 16 38 H 0.05 1.73 8.04 -2.39 -0.02 1.71 16 39 H 0.07 2.11 5.51 -2.38 -0.01 2.10 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.38 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 43 H -0.01 -0.51 8.06 -2.39 -0.02 -0.52 16 44 H 0.03 1.49 6.93 -2.39 -0.02 1.47 16 45 H 0.24 14.42 8.31 -92.72 -0.77 13.64 16 46 H 0.07 1.47 7.11 -2.38 -0.02 1.46 16 47 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.12 1.25 5.93 -2.38 -0.01 1.24 16 Total: -1.00 -70.41 384.50 3.97 -66.45 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.91 Total: 14.63 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 6.07 Total: 2.33 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -3.73 Total: -105.29 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.05 Total: -20.23 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: -4.45 SS G_CDS: -1.26 Total: -5.72 kcal Total: -70.41 3.97 -66.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230508536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.598 kcal (2) G-P(sol) polarization free energy of solvation -70.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds