Wall clock time and date at job start Tue Mar 31 2020 14:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.08998 * 112.74610 * 285.33423 * 4 3 2 6 6 C 1.53513 * 113.47721 * 154.56624 * 4 3 2 7 7 C 1.53630 * 83.53475 * 219.22495 * 6 4 3 8 8 N 1.47474 * 113.47876 * 56.10514 * 4 3 2 9 9 C 1.46897 * 111.00481 * 253.47130 * 8 4 3 10 10 C 1.52992 * 109.47543 * 189.99627 * 9 8 4 11 11 C 1.54267 * 110.03655 * 292.90749 * 10 9 8 12 12 C 1.54953 * 104.16350 * 217.13535 * 11 10 9 13 13 C 1.54890 * 102.78007 * 37.88395 * 12 11 10 14 14 C 1.53878 * 110.03684 * 175.68942 * 10 9 8 15 15 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99563 * 0.02562 * 15 2 1 18 18 S 1.81004 * 109.46896 * 179.97438 * 17 15 2 19 19 C 1.76205 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99716 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00102 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47028 * 89.99849 * 23 21 19 25 25 H 1.48506 * 109.47024 * 210.00175 * 23 21 19 26 26 H 1.48500 * 109.47007 * 329.99819 * 23 21 19 27 27 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.09005 * 114.16856 * 332.85745 * 6 4 3 33 33 H 1.08994 * 114.17133 * 105.56236 * 6 4 3 34 34 H 1.08992 * 113.42575 * 271.21035 * 7 6 4 35 35 H 1.09003 * 113.56613 * 140.75768 * 7 6 4 36 36 H 1.08993 * 109.46977 * 310.00273 * 9 8 4 37 37 H 1.09002 * 109.46668 * 69.99567 * 9 8 4 38 38 H 1.09002 * 110.01734 * 54.29687 * 10 9 8 39 39 H 1.08999 * 110.48177 * 335.78465 * 11 10 9 40 40 H 1.08999 * 110.48611 * 98.42227 * 11 10 9 41 41 H 1.09004 * 110.72334 * 279.57375 * 12 11 10 42 42 H 1.09001 * 110.92839 * 156.29535 * 12 11 10 43 43 H 1.08997 * 110.49269 * 203.40422 * 13 12 11 44 44 H 1.09005 * 110.48173 * 80.75870 * 13 12 11 45 45 H 1.08998 * 110.03099 * 238.57469 * 14 10 9 46 46 H 1.09001 * 110.03007 * 0.02562 * 14 10 9 47 47 H 1.09004 * 109.47017 * 299.99442 * 17 15 2 48 48 H 1.09002 * 109.47507 * 59.99434 * 17 15 2 49 49 H 0.97001 * 119.99678 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5579 2.0998 1.9285 6 6 3.6776 2.6228 1.5953 7 6 3.9040 1.8125 2.8808 8 7 3.1671 0.7027 2.2480 9 6 2.2616 0.0571 3.2078 10 6 3.0760 -0.7919 4.1858 11 6 3.7169 -1.9834 3.4446 12 6 3.6375 -3.1497 4.4618 13 6 2.2628 -2.9216 5.1380 14 6 2.1522 -1.3880 5.2624 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8480 0.0005 19 6 1.4415 -5.2082 -0.0003 20 1 0.3762 -5.0306 -0.0001 21 6 1.9283 -6.5081 -0.0010 22 7 1.0914 -7.5242 -0.0011 23 14 3.7708 -6.8154 -0.0019 24 1 4.2596 -6.8974 1.3979 25 1 4.0592 -8.0926 -0.7027 26 1 4.4582 -5.7006 -0.7018 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 4.4427 2.4740 0.8333 33 1 3.4345 3.6716 1.7653 34 1 3.3973 2.2297 3.7509 35 1 4.9523 1.5838 3.0729 36 1 1.7125 0.8203 3.7591 37 1 1.5584 -0.5803 2.6716 38 1 3.8500 -0.1832 4.6534 39 1 3.1497 -2.2227 2.5451 40 1 4.7549 -1.7638 3.1951 41 1 4.4436 -3.0799 5.1923 42 1 3.6623 -4.1130 3.9523 43 1 2.2404 -3.3869 6.1234 44 1 1.4604 -3.3124 4.5121 45 1 2.4782 -1.0692 6.2524 46 1 1.1235 -1.0728 5.0877 47 1 0.7585 -2.5298 0.8904 48 1 0.7590 -2.5302 -0.8896 49 1 1.4316 -8.4326 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230816268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:42 Heat of formation + Delta-G solvation = -9.082025 kcal Electronic energy + Delta-G solvation = -27659.884826 eV Core-core repulsion = 24134.819231 eV Total energy + Delta-G solvation = -3525.065595 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63786 -38.87179 -37.67092 -35.09815 -32.39334 -31.80890 -30.24327 -28.37030 -28.03628 -27.49414 -26.20118 -25.54952 -23.37164 -23.10948 -20.39082 -19.69457 -19.36834 -19.06130 -17.57850 -16.68564 -16.34562 -15.95115 -15.81775 -15.11280 -14.93188 -14.80014 -14.47138 -13.86982 -13.76367 -13.66907 -13.22291 -12.94784 -12.92540 -12.78214 -12.71950 -12.36568 -12.06536 -11.84440 -11.73373 -11.51112 -11.32019 -11.20596 -10.97899 -10.84720 -10.69326 -10.65252 -10.57290 -10.50881 -10.30218 -10.21172 -10.04919 -9.81507 -9.20366 -8.95760 -8.83721 -8.41032 -8.30150 -6.83346 -6.24953 -3.94665 2.82065 3.20025 3.28617 3.36128 3.53983 3.65771 3.97188 4.36774 4.37159 4.69281 4.73162 4.81420 4.87235 4.93792 5.02859 5.11751 5.14104 5.14645 5.21994 5.32011 5.33683 5.42955 5.44958 5.50241 5.57859 5.66327 5.70400 5.72259 5.76566 5.85954 5.89697 5.91241 5.93711 6.03238 6.06153 6.08507 6.09295 6.17351 6.26190 6.45181 6.53889 6.60931 6.72815 6.76439 7.00176 7.15761 7.64949 7.98252 8.45779 8.70977 9.21989 10.84479 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.004996 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.449021 B = 5603.136552 C = 6838.240300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.138 3.862 4 C 0.008 3.992 5 H 0.071 0.929 6 C -0.136 4.136 7 C -0.004 4.004 8 N -0.435 5.435 9 C 0.034 3.966 10 C -0.085 4.085 11 C -0.103 4.103 12 C -0.128 4.128 13 C -0.123 4.123 14 C -0.118 4.118 15 C 0.532 3.468 16 O -0.491 6.491 17 C -0.122 4.122 18 S -0.135 6.135 19 C -0.519 4.519 20 H 0.086 0.914 21 C 0.097 3.903 22 N -0.882 5.882 23 Si 0.854 3.146 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.235 1.235 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.029 0.971 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.071 0.929 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.090 0.910 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.060 20.869 6.708 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C 0.014 3.986 4 C -0.103 4.103 5 H 0.089 0.911 6 C -0.175 4.175 7 C -0.133 4.133 8 N -0.157 5.157 9 C -0.095 4.095 10 C -0.104 4.104 11 C -0.140 4.140 12 C -0.165 4.165 13 C -0.161 4.161 14 C -0.156 4.156 15 C 0.319 3.681 16 O -0.362 6.362 17 C -0.272 4.272 18 S 0.092 5.908 19 C -0.667 4.667 20 H 0.104 0.896 21 C -0.111 4.111 22 N -0.519 5.519 23 Si 0.679 3.321 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.159 1.159 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.087 0.913 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.107 0.893 48 H 0.109 0.891 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.168 20.069 6.391 21.173 hybrid contribution -1.596 0.187 0.667 1.740 sum 0.573 20.256 7.058 21.458 Atomic orbital electron populations 1.21754 0.80237 1.03009 1.01344 1.47708 1.06235 1.05738 1.76238 1.21346 0.98042 0.84636 0.94565 1.23829 0.96356 0.93166 0.96922 0.91114 1.23171 0.97986 0.97599 0.98700 1.23715 1.01132 0.92481 0.95997 1.69092 1.16454 1.16052 1.14097 1.22776 0.95227 0.97566 0.93896 1.21702 0.96885 0.97011 0.94752 1.22291 1.00988 0.92341 0.98425 1.22519 0.96142 0.99846 0.98027 1.22327 0.98543 0.95017 1.00165 1.22169 0.99138 0.96239 0.98031 1.20062 0.88042 0.84165 0.75861 1.90706 1.13171 1.86349 1.46021 1.23330 1.03069 0.95892 1.04936 1.84763 1.11658 0.97154 1.97243 1.22343 0.94930 0.91065 1.58377 0.89629 1.24683 0.98314 0.94892 0.93261 1.69946 1.34724 0.98839 1.48413 0.86774 0.85632 0.79775 0.79930 1.19224 1.20109 1.15872 0.93344 0.90766 0.91549 0.89332 0.90945 0.88647 0.91040 0.92089 0.89933 0.95311 0.90730 0.91940 0.89648 0.92208 0.92642 0.91023 0.92367 0.91281 0.92453 0.92368 0.89302 0.89131 0.92058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.82 10.29 59.85 0.62 1.43 16 2 N -0.62 -8.31 2.76 -181.57 -0.50 -8.81 16 3 C 0.14 1.56 5.61 -4.04 -0.02 1.54 16 4 C 0.01 0.09 3.36 -71.44 -0.24 -0.15 16 5 H 0.07 0.68 7.77 -51.93 -0.40 0.28 16 6 C -0.14 -1.23 8.01 -26.14 -0.21 -1.44 16 7 C 0.00 -0.04 6.94 -7.49 -0.05 -0.10 16 8 N -0.44 -5.64 4.84 -236.32 -1.14 -6.78 16 9 C 0.03 0.44 3.87 -3.83 -0.01 0.43 16 10 C -0.08 -1.14 2.98 -89.50 -0.27 -1.40 16 11 C -0.10 -1.70 6.18 -25.04 -0.15 -1.85 16 12 C -0.13 -2.00 6.91 -24.70 -0.17 -2.17 16 13 C -0.12 -1.73 6.83 -25.07 -0.17 -1.90 16 14 C -0.12 -1.46 6.46 -25.61 -0.17 -1.62 16 15 C 0.53 9.49 6.74 -10.98 -0.07 9.41 16 16 O -0.49 -10.33 14.86 5.56 0.08 -10.24 16 17 C -0.12 -2.39 4.71 36.00 0.17 -2.22 16 18 S -0.13 -3.37 18.55 -107.50 -1.99 -5.37 16 19 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 20 H 0.09 2.58 8.03 -52.49 -0.42 2.15 16 21 C 0.10 2.83 5.50 -17.43 -0.10 2.73 16 22 N -0.88 -26.67 13.97 55.49 0.78 -25.90 16 23 Si 0.85 21.90 27.74 -169.99 -4.71 17.18 16 24 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 26 H -0.23 -6.02 6.74 56.52 0.38 -5.64 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.80 6.44 -51.93 -0.33 0.46 16 29 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 30 H 0.09 1.19 7.18 -51.93 -0.37 0.82 16 31 H 0.07 0.61 7.89 -51.93 -0.41 0.20 16 32 H 0.10 0.92 7.95 -51.93 -0.41 0.51 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.57 7.70 -51.93 -0.40 0.17 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.03 0.33 7.56 -51.93 -0.39 -0.06 16 37 H 0.07 1.11 7.50 -51.93 -0.39 0.72 16 38 H 0.06 0.81 7.57 -51.93 -0.39 0.41 16 39 H 0.08 1.68 7.77 -51.93 -0.40 1.28 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.69 7.67 -51.93 -0.40 0.29 16 47 H 0.09 1.68 8.11 -51.91 -0.42 1.26 16 48 H 0.09 1.70 7.40 -51.91 -0.38 1.32 16 49 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 394.13 15.07 5.94 5.94 Total: -1.00 -32.56 394.13 -11.01 -43.56 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -8.91 Total: 2.30 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.54 Total: -11.89 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.87 Total: -41.48 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.99 Total: -5.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.56 -11.01 -43.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.482 kcal (2) G-P(sol) polarization free energy of solvation -32.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds