Wall clock time and date at job start Tue Mar 31 2020 14:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00225 * 2 1 4 4 C 1.53006 * 109.47075 * 89.99694 * 3 2 1 5 5 H 1.08998 * 112.74610 * 285.33423 * 4 3 2 6 6 C 1.53513 * 113.47721 * 154.56624 * 4 3 2 7 7 C 1.53630 * 83.53475 * 219.22495 * 6 4 3 8 8 N 1.47474 * 113.47876 * 56.10514 * 4 3 2 9 9 C 1.46897 * 111.00481 * 253.47130 * 8 4 3 10 10 C 1.52992 * 109.47543 * 189.99627 * 9 8 4 11 11 C 1.54267 * 110.03655 * 292.90749 * 10 9 8 12 12 C 1.54953 * 104.16350 * 217.13535 * 11 10 9 13 13 C 1.54890 * 102.78007 * 37.88395 * 12 11 10 14 14 C 1.53878 * 110.03684 * 175.68942 * 10 9 8 15 15 C 1.34780 * 120.00229 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00031 * 180.02562 * 15 2 1 17 17 C 1.50699 * 119.99563 * 0.02562 * 15 2 1 18 18 S 1.81004 * 109.46896 * 179.97438 * 17 15 2 19 19 C 1.76205 * 99.99950 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00211 * 359.97438 * 19 18 17 21 21 C 1.38799 * 119.99841 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99716 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00102 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.47028 * 89.99849 * 23 21 19 25 25 H 1.48506 * 109.47024 * 210.00175 * 23 21 19 26 26 H 1.48500 * 109.47007 * 329.99819 * 23 21 19 27 27 H 1.09002 * 109.47391 * 270.00005 * 1 2 3 28 28 H 1.09001 * 109.46813 * 150.00061 * 1 2 3 29 29 H 1.09004 * 109.47041 * 30.00189 * 1 2 3 30 30 H 1.08993 * 109.47560 * 209.99542 * 3 2 1 31 31 H 1.09000 * 109.47209 * 330.00227 * 3 2 1 32 32 H 1.09005 * 114.16856 * 332.85745 * 6 4 3 33 33 H 1.08994 * 114.17133 * 105.56236 * 6 4 3 34 34 H 1.08992 * 113.42575 * 271.21035 * 7 6 4 35 35 H 1.09003 * 113.56613 * 140.75768 * 7 6 4 36 36 H 1.08993 * 109.46977 * 310.00273 * 9 8 4 37 37 H 1.09002 * 109.46668 * 69.99567 * 9 8 4 38 38 H 1.09002 * 110.01734 * 54.29687 * 10 9 8 39 39 H 1.08999 * 110.48177 * 335.78465 * 11 10 9 40 40 H 1.08999 * 110.48611 * 98.42227 * 11 10 9 41 41 H 1.09004 * 110.72334 * 279.57375 * 12 11 10 42 42 H 1.09001 * 110.92839 * 156.29535 * 12 11 10 43 43 H 1.08997 * 110.49269 * 203.40422 * 13 12 11 44 44 H 1.09005 * 110.48173 * 80.75870 * 13 12 11 45 45 H 1.08998 * 110.03099 * 238.57469 * 14 10 9 46 46 H 1.09001 * 110.03007 * 0.02562 * 14 10 9 47 47 H 1.09004 * 109.47017 * 299.99442 * 17 15 2 48 48 H 1.09002 * 109.47507 * 59.99434 * 17 15 2 49 49 H 0.97001 * 119.99678 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4426 5 1 1.5579 2.0998 1.9285 6 6 3.6776 2.6228 1.5953 7 6 3.9040 1.8125 2.8808 8 7 3.1671 0.7027 2.2480 9 6 2.2616 0.0571 3.2078 10 6 3.0760 -0.7919 4.1858 11 6 3.7169 -1.9834 3.4446 12 6 3.6375 -3.1497 4.4618 13 6 2.2628 -2.9216 5.1380 14 6 2.1522 -1.3880 5.2624 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1672 0.0010 17 6 1.3854 -2.4723 0.0005 18 16 2.5616 -3.8480 0.0005 19 6 1.4415 -5.2082 -0.0003 20 1 0.3762 -5.0306 -0.0001 21 6 1.9283 -6.5081 -0.0010 22 7 1.0914 -7.5242 -0.0011 23 14 3.7708 -6.8154 -0.0019 24 1 4.2596 -6.8974 1.3979 25 1 4.0592 -8.0926 -0.7027 26 1 4.4582 -5.7006 -0.7018 27 1 -0.3634 0.0000 1.0277 28 1 -0.3633 -0.8900 -0.5138 29 1 -0.3633 0.8900 -0.5139 30 1 3.1499 1.1384 -0.5137 31 1 1.6085 2.0284 -0.5138 32 1 4.4427 2.4740 0.8333 33 1 3.4345 3.6716 1.7653 34 1 3.3973 2.2297 3.7509 35 1 4.9523 1.5838 3.0729 36 1 1.7125 0.8203 3.7591 37 1 1.5584 -0.5803 2.6716 38 1 3.8500 -0.1832 4.6534 39 1 3.1497 -2.2227 2.5451 40 1 4.7549 -1.7638 3.1951 41 1 4.4436 -3.0799 5.1923 42 1 3.6623 -4.1130 3.9523 43 1 2.2404 -3.3869 6.1234 44 1 1.4604 -3.3124 4.5121 45 1 2.4782 -1.0692 6.2524 46 1 1.1235 -1.0728 5.0877 47 1 0.7585 -2.5298 0.8904 48 1 0.7590 -2.5302 -0.8896 49 1 1.4316 -8.4326 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230816268.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:41 Heat of formation + Delta-G solvation = -29.216840 kcal Electronic energy + Delta-G solvation = -27660.757937 eV Core-core repulsion = 24134.819231 eV Total energy + Delta-G solvation = -3525.938706 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58261 -40.12940 -38.78492 -36.30876 -34.66312 -32.83417 -31.53313 -29.53837 -29.19279 -28.48787 -27.83936 -27.16490 -24.31248 -24.10400 -21.57736 -20.78540 -20.42221 -20.28720 -19.47584 -17.93427 -17.44925 -17.17694 -17.00929 -16.92646 -16.21374 -15.94970 -15.73410 -15.54827 -14.97669 -14.84657 -14.68800 -14.30371 -14.12505 -14.08422 -13.68989 -13.47417 -13.32814 -13.18539 -13.03174 -12.87812 -12.67609 -12.55786 -12.38882 -12.23804 -11.98831 -11.87845 -11.84632 -11.71223 -11.58416 -11.44548 -11.29127 -11.17240 -11.12088 -10.65343 -10.46704 -9.76364 -9.32783 -8.93425 -8.51457 -6.18946 1.00470 1.28660 1.45583 1.56193 1.79935 2.21390 2.24878 2.73549 2.87274 3.11294 3.58521 3.72752 3.75178 3.80353 3.81495 3.93753 4.16596 4.22265 4.28591 4.34212 4.38158 4.40585 4.44313 4.53532 4.57602 4.59541 4.64554 4.72297 4.78162 4.80306 4.81894 4.89284 4.92541 4.95259 5.01549 5.02181 5.08308 5.09538 5.25765 5.32571 5.44575 5.50204 5.53238 5.64673 5.71127 5.77935 6.11264 6.29028 6.45208 6.94758 7.36515 8.61383 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.004996 C = 0.004094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.449021 B = 5603.136552 C = 6838.240300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.610 5.610 3 C 0.134 3.866 4 C 0.011 3.989 5 H 0.091 0.909 6 C -0.121 4.121 7 C -0.004 4.004 8 N -0.472 5.472 9 C 0.042 3.958 10 C -0.078 4.078 11 C -0.100 4.100 12 C -0.130 4.130 13 C -0.122 4.122 14 C -0.110 4.110 15 C 0.536 3.464 16 O -0.530 6.530 17 C -0.106 4.106 18 S -0.161 6.161 19 C -0.526 4.526 20 H 0.058 0.942 21 C 0.050 3.950 22 N -0.918 5.918 23 Si 0.909 3.091 24 H -0.264 1.264 25 H -0.259 1.259 26 H -0.238 1.238 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.112 0.888 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.050 0.950 37 H 0.049 0.951 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.046 0.954 45 H 0.080 0.920 46 H 0.067 0.933 47 H 0.093 0.907 48 H 0.100 0.900 49 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.297 24.079 7.775 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.345 5.345 3 C 0.012 3.988 4 C -0.100 4.100 5 H 0.108 0.892 6 C -0.160 4.160 7 C -0.132 4.132 8 N -0.195 5.195 9 C -0.087 4.087 10 C -0.097 4.097 11 C -0.137 4.137 12 C -0.168 4.168 13 C -0.160 4.160 14 C -0.148 4.148 15 C 0.322 3.678 16 O -0.406 6.406 17 C -0.257 4.257 18 S 0.066 5.934 19 C -0.674 4.674 20 H 0.076 0.924 21 C -0.155 4.155 22 N -0.556 5.556 23 Si 0.731 3.269 24 H -0.189 1.189 25 H -0.183 1.183 26 H -0.162 1.162 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.082 0.918 31 H 0.130 0.870 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.060 0.940 41 H 0.092 0.908 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.065 0.935 45 H 0.098 0.902 46 H 0.085 0.915 47 H 0.112 0.888 48 H 0.118 0.882 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.773 23.313 7.454 24.540 hybrid contribution -1.580 -0.709 0.317 1.761 sum 0.193 22.604 7.771 23.903 Atomic orbital electron populations 1.22010 0.77940 1.04468 1.02499 1.47660 1.07661 1.04999 1.74144 1.21584 0.97422 0.84108 0.95717 1.23887 0.97513 0.92753 0.95831 0.89154 1.23085 0.96701 0.98806 0.97366 1.23753 1.00380 0.91900 0.97210 1.69107 1.17505 1.17757 1.15086 1.22639 0.94805 0.97552 0.93665 1.21648 0.97301 0.95833 0.94877 1.22150 0.99578 0.94383 0.97628 1.22524 0.98071 0.97970 0.98191 1.22307 0.96476 0.96835 1.00339 1.22135 0.99491 0.94366 0.98759 1.19649 0.87374 0.84689 0.76071 1.90692 1.14595 1.86871 1.48412 1.23281 1.01825 0.95056 1.05580 1.84673 1.13142 0.98220 1.97342 1.22486 0.94363 0.92755 1.57788 0.92421 1.25462 1.02262 0.94764 0.93002 1.70018 1.36607 0.99469 1.49521 0.85951 0.80775 0.80061 0.80125 1.18896 1.18330 1.16165 0.92289 0.91631 0.87850 0.91830 0.87041 0.89846 0.88094 0.90351 0.91137 0.93199 0.93200 0.90937 0.93245 0.93955 0.90772 0.94129 0.90561 0.93548 0.90162 0.91469 0.88830 0.88223 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.29 127.77 1.31 2.61 16 2 N -0.61 -15.24 2.76 -846.75 -2.34 -17.58 16 3 C 0.13 2.70 5.61 86.38 0.48 3.19 16 4 C 0.01 0.19 3.36 42.19 0.14 0.33 16 5 H 0.09 1.32 7.77 -2.39 -0.02 1.30 16 6 C -0.12 -1.83 8.01 30.98 0.25 -1.58 16 7 C 0.00 -0.07 6.94 83.61 0.58 0.51 16 8 N -0.47 -11.53 4.84 -901.59 -4.37 -15.90 16 9 C 0.04 1.02 3.87 86.30 0.33 1.35 16 10 C -0.08 -2.00 2.98 -10.07 -0.03 -2.03 16 11 C -0.10 -3.39 6.18 31.69 0.20 -3.20 16 12 C -0.13 -4.17 6.91 31.91 0.22 -3.95 16 13 C -0.12 -3.38 6.83 31.67 0.22 -3.17 16 14 C -0.11 -2.49 6.46 31.32 0.20 -2.28 16 15 C 0.54 19.19 6.74 87.66 0.59 19.78 16 16 O -0.53 -22.87 14.86 -3.02 -0.04 -22.91 16 17 C -0.11 -4.27 4.71 71.24 0.34 -3.94 16 18 S -0.16 -8.31 18.55 -56.49 -1.05 -9.36 16 19 C -0.53 -31.29 10.04 67.95 0.68 -30.60 16 20 H 0.06 3.63 8.03 -2.91 -0.02 3.61 16 21 C 0.05 3.01 5.50 84.86 0.47 3.48 16 22 N -0.92 -56.81 13.97 21.65 0.30 -56.50 16 23 Si 0.91 46.24 27.74 68.60 1.90 48.14 16 24 H -0.26 -13.19 7.11 99.48 0.71 -12.48 16 25 H -0.26 -12.34 7.11 99.48 0.71 -11.63 16 26 H -0.24 -12.13 6.74 99.48 0.67 -11.46 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.29 6.44 -2.39 -0.02 1.28 16 29 H 0.10 1.11 7.89 -2.38 -0.02 1.09 16 30 H 0.06 1.64 7.18 -2.39 -0.02 1.62 16 31 H 0.11 1.39 7.89 -2.39 -0.02 1.37 16 32 H 0.08 1.48 7.95 -2.38 -0.02 1.46 16 33 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.18 7.70 -2.39 -0.02 1.16 16 35 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.05 0.98 7.56 -2.39 -0.02 0.97 16 37 H 0.05 1.44 7.50 -2.39 -0.02 1.43 16 38 H 0.07 1.73 7.57 -2.39 -0.02 1.71 16 39 H 0.05 2.05 7.77 -2.39 -0.02 2.03 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.07 1.42 7.67 -2.39 -0.02 1.40 16 47 H 0.09 3.64 8.11 -2.39 -0.02 3.62 16 48 H 0.10 3.79 7.40 -2.39 -0.02 3.77 16 49 H 0.28 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -74.49 394.13 1.25 -73.23 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.86 Total: 20.37 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: 5.98 Total: -19.49 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -6.40 Total: -89.98 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.04 Total: -22.91 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.90 Total: 48.14 kcal Atomic # 16 Polarization: -8.31 SS G_CDS: -1.05 Total: -9.36 kcal Total: -74.49 1.25 -73.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816268.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.017 kcal (2) G-P(sol) polarization free energy of solvation -74.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds