Wall clock time and date at job start Tue Mar 31 2020 14:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00315 * 2 1 4 4 C 1.53002 * 109.46910 * 269.99752 * 3 2 1 5 5 H 1.08998 * 112.75169 * 75.76762 * 4 3 2 6 6 C 1.53518 * 113.47520 * 206.62106 * 4 3 2 7 7 C 1.53512 * 83.57620 * 140.78785 * 6 4 3 8 8 N 1.47478 * 87.93160 * 333.97707 * 7 6 4 9 9 C 1.46898 * 111.00420 * 138.70786 * 8 7 6 10 10 C 1.53002 * 109.47524 * 74.02018 * 9 8 7 11 11 C 1.54260 * 110.03535 * 292.17256 * 10 9 8 12 12 C 1.54887 * 104.19594 * 217.10173 * 11 10 9 13 13 C 1.54886 * 102.74986 * 37.94496 * 12 11 10 14 14 C 1.53870 * 110.03395 * 175.00051 * 10 9 8 15 15 C 1.34778 * 119.99660 * 179.97438 * 2 1 3 16 16 O 1.21282 * 120.00178 * 179.97438 * 15 2 1 17 17 C 1.50703 * 120.00172 * 0.02562 * 15 2 1 18 18 S 1.81000 * 109.47042 * 179.97438 * 17 15 2 19 19 C 1.76199 * 99.99871 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99752 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99976 * 0.28020 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71945 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72142 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72250 * 23 21 19 27 27 H 1.08998 * 109.47580 * 270.00686 * 1 2 3 28 28 H 1.09003 * 109.47270 * 30.00531 * 1 2 3 29 29 H 1.09009 * 109.47193 * 150.00280 * 1 2 3 30 30 H 1.08996 * 109.47013 * 29.99446 * 3 2 1 31 31 H 1.08997 * 109.47424 * 149.99972 * 3 2 1 32 32 H 1.09003 * 114.16753 * 254.43210 * 6 4 3 33 33 H 1.08993 * 114.17345 * 27.14227 * 6 4 3 34 34 H 1.08997 * 113.48019 * 219.20846 * 7 6 4 35 35 H 1.09005 * 113.52990 * 88.74640 * 7 6 4 36 36 H 1.08999 * 109.47342 * 194.02729 * 9 8 7 37 37 H 1.09011 * 109.46854 * 314.02517 * 9 8 7 38 38 H 1.09005 * 110.01423 * 53.61174 * 10 9 8 39 39 H 1.09005 * 110.48464 * 335.78152 * 11 10 9 40 40 H 1.09001 * 110.48938 * 98.42194 * 11 10 9 41 41 H 1.08999 * 110.75695 * 279.62454 * 12 11 10 42 42 H 1.09006 * 110.91264 * 156.32670 * 12 11 10 43 43 H 1.09002 * 110.48861 * 203.38024 * 13 12 11 44 44 H 1.09000 * 110.60504 * 80.78495 * 13 12 11 45 45 H 1.09001 * 110.03691 * 238.57618 * 14 10 9 46 46 H 1.09001 * 110.03313 * 0.02562 * 14 10 9 47 47 H 1.09005 * 109.47194 * 59.99652 * 17 15 2 48 48 H 1.09000 * 109.46904 * 299.99694 * 17 15 2 49 49 H 0.97005 * 119.99723 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 1.5626 2.1173 -1.9224 6 6 3.6944 2.5990 -1.5995 7 6 3.8979 1.7904 -2.8884 8 7 3.1444 0.6922 -2.2550 9 6 2.2220 0.0662 -3.2117 10 6 3.0156 -0.7943 -4.1970 11 6 3.8850 0.1033 -5.1013 12 6 3.8350 -0.5900 -6.4855 13 6 2.3718 -1.0921 -6.5635 14 6 2.0535 -1.5544 -5.1265 15 6 2.1388 -1.1673 0.0005 16 8 3.3516 -1.1674 0.0001 17 6 1.3852 -2.4724 0.0005 18 16 2.5614 -3.8481 0.0005 19 6 1.4413 -5.2082 0.0013 20 1 0.3760 -5.0305 0.0012 21 6 1.9280 -6.5081 0.0010 22 7 1.0911 -7.5242 0.0021 23 14 3.7705 -6.8156 0.0076 24 1 4.2630 -6.9014 -1.3907 25 1 4.4561 -5.6990 0.7063 26 1 4.0570 -8.0908 0.7125 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8901 -0.5138 30 1 1.6084 2.0283 0.5137 31 1 3.1499 1.1383 0.5138 32 1 3.4708 3.6531 -1.7646 33 1 4.4608 2.4328 -0.8426 34 1 4.9410 1.5437 -3.0861 35 1 3.3946 2.2189 -3.7551 36 1 1.5103 -0.5600 -2.6737 37 1 1.6839 0.8412 -3.7578 38 1 3.6448 -1.4993 -3.6537 39 1 3.4632 1.1067 -5.1617 40 1 4.9093 0.1408 -4.7303 41 1 4.5330 -1.4262 -6.5242 42 1 4.0422 0.1216 -7.2848 43 1 2.2917 -1.9272 -7.2595 44 1 1.7041 -0.2835 -6.8608 45 1 2.2163 -2.6283 -5.0351 46 1 1.0212 -1.3100 -4.8761 47 1 0.7588 -2.5303 -0.8897 48 1 0.7583 -2.5299 0.8903 49 1 1.4313 -8.4327 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230816269.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:45 Heat of formation + Delta-G solvation = -6.249733 kcal Electronic energy + Delta-G solvation = -27115.227497 eV Core-core repulsion = 23590.284719 eV Total energy + Delta-G solvation = -3524.942777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74734 -38.96697 -37.78750 -35.09571 -32.39242 -31.91646 -30.28523 -28.83662 -27.93496 -27.70884 -26.19627 -25.54776 -23.57907 -22.99779 -20.71011 -19.96893 -19.34081 -19.04999 -17.58068 -16.66095 -16.40358 -16.11119 -15.81931 -15.21574 -15.01808 -14.89332 -14.54808 -14.22285 -13.78324 -13.63791 -13.20466 -13.08796 -12.92130 -12.73263 -12.68479 -12.36844 -12.31159 -12.00379 -11.80225 -11.58266 -11.48567 -11.20662 -11.11258 -11.09496 -10.97179 -10.70871 -10.63816 -10.59476 -10.51202 -10.35464 -10.15519 -9.80978 -9.20592 -8.95772 -8.85742 -8.40636 -8.29502 -6.83968 -6.24849 -3.94755 2.82704 3.20623 3.28925 3.36558 3.54701 3.66173 3.96281 4.36674 4.37431 4.57469 4.64114 4.70678 4.73119 4.75765 5.01437 5.09256 5.12179 5.14489 5.15759 5.21527 5.27640 5.33803 5.43076 5.45367 5.50020 5.53034 5.56590 5.63531 5.67924 5.68654 5.71054 5.79045 5.82907 5.87175 5.90744 5.94677 5.99930 6.05714 6.09345 6.14299 6.27286 6.34464 6.42249 6.54913 6.76334 7.15911 7.65440 7.98373 8.45604 8.71645 9.22041 10.84540 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.004491 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.153740 B = 6233.505957 C = 7795.758293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.623 5.623 3 C 0.138 3.862 4 C 0.008 3.992 5 H 0.071 0.929 6 C -0.139 4.139 7 C -0.004 4.004 8 N -0.437 5.437 9 C 0.035 3.965 10 C -0.087 4.087 11 C -0.119 4.119 12 C -0.126 4.126 13 C -0.123 4.123 14 C -0.121 4.121 15 C 0.533 3.467 16 O -0.493 6.493 17 C -0.119 4.119 18 S -0.139 6.139 19 C -0.520 4.520 20 H 0.086 0.914 21 C 0.096 3.904 22 N -0.882 5.882 23 Si 0.855 3.145 24 H -0.268 1.268 25 H -0.235 1.235 26 H -0.275 1.275 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.031 0.969 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.196 22.351 -8.285 23.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.359 5.359 3 C 0.014 3.986 4 C -0.102 4.102 5 H 0.089 0.911 6 C -0.177 4.177 7 C -0.133 4.133 8 N -0.159 5.159 9 C -0.093 4.093 10 C -0.106 4.106 11 C -0.156 4.156 12 C -0.164 4.164 13 C -0.161 4.161 14 C -0.159 4.159 15 C 0.319 3.681 16 O -0.365 6.365 17 C -0.270 4.270 18 S 0.087 5.913 19 C -0.667 4.667 20 H 0.104 0.896 21 C -0.112 4.112 22 N -0.519 5.519 23 Si 0.680 3.320 24 H -0.193 1.193 25 H -0.159 1.159 26 H -0.200 1.200 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.079 0.921 47 H 0.108 0.892 48 H 0.109 0.891 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.294 21.536 -7.963 23.075 hybrid contribution -1.612 0.123 -0.561 1.711 sum 0.682 21.659 -8.524 23.286 Atomic orbital electron populations 1.21742 0.80233 1.02746 1.01626 1.47701 1.06230 1.05703 1.76276 1.21326 0.98028 0.84725 0.94542 1.23822 0.96432 0.93151 0.96840 0.91110 1.23193 0.97885 0.97754 0.98901 1.23853 1.01061 0.92497 0.95855 1.69097 1.16051 1.16893 1.13838 1.22698 0.95067 0.97692 0.93863 1.21703 0.96699 0.97115 0.95039 1.22596 0.99993 0.98318 0.94720 1.22513 0.96880 0.99938 0.97059 1.22341 0.96440 1.00268 0.97016 1.22179 0.99042 1.00632 0.94021 1.20072 0.88016 0.84194 0.75786 1.90699 1.13287 1.86378 1.46166 1.23305 1.02975 0.95776 1.04953 1.84779 1.11858 0.97312 1.97344 1.22340 0.94918 0.91050 1.58410 0.89597 1.24695 0.98411 0.94878 0.93243 1.69947 1.34747 0.98841 1.48404 0.86750 0.85535 0.79782 0.79891 1.19283 1.15867 1.20045 0.92800 0.91822 0.90941 0.90926 0.89335 0.91051 0.88661 0.89817 0.91710 0.90884 0.95038 0.89559 0.92013 0.91615 0.91504 0.92114 0.91906 0.92192 0.91182 0.92083 0.89230 0.89101 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 10.24 59.84 0.61 1.44 16 2 N -0.62 -8.45 2.74 -181.58 -0.50 -8.94 16 3 C 0.14 1.58 5.58 -4.04 -0.02 1.56 16 4 C 0.01 0.09 3.37 -71.42 -0.24 -0.15 16 5 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 6 C -0.14 -1.26 8.00 -26.20 -0.21 -1.47 16 7 C 0.00 -0.04 5.60 -7.54 -0.04 -0.08 16 8 N -0.44 -5.68 5.01 -236.48 -1.19 -6.87 16 9 C 0.04 0.45 4.21 -3.82 -0.02 0.44 16 10 C -0.09 -1.14 3.15 -89.51 -0.28 -1.42 16 11 C -0.12 -1.29 4.68 -25.08 -0.12 -1.41 16 12 C -0.13 -1.28 6.91 -24.74 -0.17 -1.45 16 13 C -0.12 -1.28 6.83 -25.07 -0.17 -1.45 16 14 C -0.12 -1.49 6.46 -25.61 -0.17 -1.66 16 15 C 0.53 9.75 6.80 -10.98 -0.07 9.68 16 16 O -0.49 -10.74 14.87 5.56 0.08 -10.66 16 17 C -0.12 -2.39 4.71 36.01 0.17 -2.23 16 18 S -0.14 -3.59 18.54 -107.50 -1.99 -5.58 16 19 C -0.52 -15.13 10.04 30.94 0.31 -14.82 16 20 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 21 C 0.10 2.84 5.50 -17.43 -0.10 2.74 16 22 N -0.88 -26.88 13.97 55.49 0.78 -26.11 16 23 Si 0.86 22.13 27.74 -169.99 -4.72 17.42 16 24 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.23 -6.08 6.73 56.52 0.38 -5.70 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.50 8.07 -51.93 -0.42 0.08 16 29 H 0.07 0.79 6.44 -51.92 -0.33 0.45 16 30 H 0.07 0.63 8.07 -51.93 -0.42 0.21 16 31 H 0.09 1.21 7.15 -51.93 -0.37 0.84 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.94 7.94 -51.93 -0.41 0.53 16 34 H 0.08 0.90 7.48 -51.93 -0.39 0.51 16 35 H 0.06 0.59 6.09 -51.93 -0.32 0.28 16 36 H 0.07 1.07 7.68 -51.93 -0.40 0.67 16 37 H 0.03 0.36 7.42 -51.92 -0.39 -0.02 16 38 H 0.09 1.43 8.14 -51.93 -0.42 1.00 16 39 H 0.06 0.61 5.81 -51.93 -0.30 0.31 16 40 H 0.07 0.74 7.45 -51.93 -0.39 0.36 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 47 H 0.09 1.71 7.40 -51.91 -0.38 1.32 16 48 H 0.09 1.74 8.11 -51.92 -0.42 1.32 16 49 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -33.47 387.95 -10.90 -44.38 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -8.70 Total: 0.80 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -0.52 Total: -10.28 kcal Atomic # 7 Polarization: -41.01 SS G_CDS: -0.91 Total: -41.92 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.72 Total: 17.42 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.47 -10.90 -44.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816269.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.128 kcal (2) G-P(sol) polarization free energy of solvation -33.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds