Wall clock time and date at job start Tue Mar 31 2020 14:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46494 * 120.00315 * 2 1 4 4 C 1.53002 * 109.46910 * 269.99752 * 3 2 1 5 5 H 1.08998 * 112.75169 * 75.76762 * 4 3 2 6 6 C 1.53518 * 113.47520 * 206.62106 * 4 3 2 7 7 C 1.53512 * 83.57620 * 140.78785 * 6 4 3 8 8 N 1.47478 * 87.93160 * 333.97707 * 7 6 4 9 9 C 1.46898 * 111.00420 * 138.70786 * 8 7 6 10 10 C 1.53002 * 109.47524 * 74.02018 * 9 8 7 11 11 C 1.54260 * 110.03535 * 292.17256 * 10 9 8 12 12 C 1.54887 * 104.19594 * 217.10173 * 11 10 9 13 13 C 1.54886 * 102.74986 * 37.94496 * 12 11 10 14 14 C 1.53870 * 110.03395 * 175.00051 * 10 9 8 15 15 C 1.34778 * 119.99660 * 179.97438 * 2 1 3 16 16 O 1.21282 * 120.00178 * 179.97438 * 15 2 1 17 17 C 1.50703 * 120.00172 * 0.02562 * 15 2 1 18 18 S 1.81000 * 109.47042 * 179.97438 * 17 15 2 19 19 C 1.76199 * 99.99871 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99976 * 0.02562 * 19 18 17 21 21 C 1.38803 * 119.99949 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99752 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99976 * 0.28020 * 21 19 18 24 24 H 1.48501 * 109.46922 * 269.71945 * 23 21 19 25 25 H 1.48496 * 109.47354 * 29.72142 * 23 21 19 26 26 H 1.48501 * 109.47428 * 149.72250 * 23 21 19 27 27 H 1.08998 * 109.47580 * 270.00686 * 1 2 3 28 28 H 1.09003 * 109.47270 * 30.00531 * 1 2 3 29 29 H 1.09009 * 109.47193 * 150.00280 * 1 2 3 30 30 H 1.08996 * 109.47013 * 29.99446 * 3 2 1 31 31 H 1.08997 * 109.47424 * 149.99972 * 3 2 1 32 32 H 1.09003 * 114.16753 * 254.43210 * 6 4 3 33 33 H 1.08993 * 114.17345 * 27.14227 * 6 4 3 34 34 H 1.08997 * 113.48019 * 219.20846 * 7 6 4 35 35 H 1.09005 * 113.52990 * 88.74640 * 7 6 4 36 36 H 1.08999 * 109.47342 * 194.02729 * 9 8 7 37 37 H 1.09011 * 109.46854 * 314.02517 * 9 8 7 38 38 H 1.09005 * 110.01423 * 53.61174 * 10 9 8 39 39 H 1.09005 * 110.48464 * 335.78152 * 11 10 9 40 40 H 1.09001 * 110.48938 * 98.42194 * 11 10 9 41 41 H 1.08999 * 110.75695 * 279.62454 * 12 11 10 42 42 H 1.09006 * 110.91264 * 156.32670 * 12 11 10 43 43 H 1.09002 * 110.48861 * 203.38024 * 13 12 11 44 44 H 1.09000 * 110.60504 * 80.78495 * 13 12 11 45 45 H 1.09001 * 110.03691 * 238.57618 * 14 10 9 46 46 H 1.09001 * 110.03313 * 0.02562 * 14 10 9 47 47 H 1.09005 * 109.47194 * 59.99652 * 17 15 2 48 48 H 1.09000 * 109.46904 * 299.99694 * 17 15 2 49 49 H 0.97005 * 119.99723 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7102 -1.4425 5 1 1.5626 2.1173 -1.9224 6 6 3.6944 2.5990 -1.5995 7 6 3.8979 1.7904 -2.8884 8 7 3.1444 0.6922 -2.2550 9 6 2.2220 0.0662 -3.2117 10 6 3.0156 -0.7943 -4.1970 11 6 3.8850 0.1033 -5.1013 12 6 3.8350 -0.5900 -6.4855 13 6 2.3718 -1.0921 -6.5635 14 6 2.0535 -1.5544 -5.1265 15 6 2.1388 -1.1673 0.0005 16 8 3.3516 -1.1674 0.0001 17 6 1.3852 -2.4724 0.0005 18 16 2.5614 -3.8481 0.0005 19 6 1.4413 -5.2082 0.0013 20 1 0.3760 -5.0305 0.0012 21 6 1.9280 -6.5081 0.0010 22 7 1.0911 -7.5242 0.0021 23 14 3.7705 -6.8156 0.0076 24 1 4.2630 -6.9014 -1.3907 25 1 4.4561 -5.6990 0.7063 26 1 4.0570 -8.0908 0.7125 27 1 -0.3634 0.0001 1.0276 28 1 -0.3634 0.8900 -0.5139 29 1 -0.3634 -0.8901 -0.5138 30 1 1.6084 2.0283 0.5137 31 1 3.1499 1.1383 0.5138 32 1 3.4708 3.6531 -1.7646 33 1 4.4608 2.4328 -0.8426 34 1 4.9410 1.5437 -3.0861 35 1 3.3946 2.2189 -3.7551 36 1 1.5103 -0.5600 -2.6737 37 1 1.6839 0.8412 -3.7578 38 1 3.6448 -1.4993 -3.6537 39 1 3.4632 1.1067 -5.1617 40 1 4.9093 0.1408 -4.7303 41 1 4.5330 -1.4262 -6.5242 42 1 4.0422 0.1216 -7.2848 43 1 2.2917 -1.9272 -7.2595 44 1 1.7041 -0.2835 -6.8608 45 1 2.2163 -2.6283 -5.0351 46 1 1.0212 -1.3100 -4.8761 47 1 0.7588 -2.5303 -0.8897 48 1 0.7583 -2.5299 0.8903 49 1 1.4313 -8.4327 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230816269.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:45 Heat of formation + Delta-G solvation = -27.576316 kcal Electronic energy + Delta-G solvation = -27116.152287 eV Core-core repulsion = 23590.284719 eV Total energy + Delta-G solvation = -3525.867567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.68002 -40.24909 -38.72323 -36.33311 -34.68187 -32.85095 -31.56849 -29.82127 -29.04949 -28.58642 -27.85967 -27.17743 -24.49724 -23.94367 -21.58841 -20.87916 -20.66102 -20.07302 -19.50624 -17.96634 -17.41966 -17.24501 -17.13128 -16.91975 -16.25921 -15.93485 -15.70368 -15.60149 -15.17614 -14.93001 -14.60774 -14.30500 -14.15596 -13.96139 -13.60135 -13.44788 -13.38181 -13.26206 -13.16830 -13.03126 -12.68148 -12.64618 -12.44782 -12.33107 -11.99852 -11.95106 -11.88029 -11.61431 -11.53954 -11.47523 -11.27446 -11.18614 -11.12116 -10.69504 -10.50335 -9.78474 -9.33989 -8.98291 -8.53030 -6.22154 0.99135 1.28253 1.45253 1.54975 1.76829 2.19509 2.24012 2.70994 2.85375 3.09763 3.56330 3.67343 3.71159 3.74763 3.83991 3.92097 4.15057 4.24167 4.26970 4.28859 4.33763 4.34343 4.42520 4.49467 4.51139 4.56204 4.58496 4.71294 4.74056 4.77782 4.79844 4.87481 4.91690 4.95394 5.00120 5.02319 5.05061 5.08453 5.20151 5.31796 5.37306 5.42700 5.49065 5.53785 5.69454 5.75500 6.09278 6.28328 6.43333 6.92774 7.33666 8.59699 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.010535 B = 0.004491 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.153740 B = 6233.505957 C = 7795.758293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.609 5.609 3 C 0.134 3.866 4 C 0.011 3.989 5 H 0.093 0.907 6 C -0.125 4.125 7 C -0.002 4.002 8 N -0.477 5.477 9 C 0.045 3.955 10 C -0.087 4.087 11 C -0.109 4.109 12 C -0.125 4.125 13 C -0.117 4.117 14 C -0.123 4.123 15 C 0.535 3.465 16 O -0.537 6.537 17 C -0.104 4.104 18 S -0.172 6.172 19 C -0.527 4.527 20 H 0.059 0.941 21 C 0.049 3.951 22 N -0.917 5.917 23 Si 0.911 3.089 24 H -0.264 1.264 25 H -0.238 1.238 26 H -0.257 1.257 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.112 0.888 31 H 0.062 0.938 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.038 0.962 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.078 0.922 45 H 0.043 0.957 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.101 0.899 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 25.643 -9.138 27.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.343 5.343 3 C 0.011 3.989 4 C -0.099 4.099 5 H 0.111 0.889 6 C -0.163 4.163 7 C -0.130 4.130 8 N -0.199 5.199 9 C -0.084 4.084 10 C -0.106 4.106 11 C -0.146 4.146 12 C -0.162 4.162 13 C -0.154 4.154 14 C -0.161 4.161 15 C 0.321 3.679 16 O -0.412 6.412 17 C -0.255 4.255 18 S 0.055 5.945 19 C -0.675 4.675 20 H 0.077 0.923 21 C -0.156 4.156 22 N -0.555 5.555 23 Si 0.734 3.266 24 H -0.189 1.189 25 H -0.162 1.162 26 H -0.181 1.181 27 H 0.087 0.913 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.130 0.870 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.101 0.899 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.084 0.916 47 H 0.116 0.884 48 H 0.119 0.881 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.772 24.861 -8.813 26.436 hybrid contribution -1.584 -0.800 -0.275 1.796 sum 0.188 24.061 -9.087 25.721 Atomic orbital electron populations 1.22011 0.77809 1.04095 1.03026 1.47654 1.07724 1.04921 1.74031 1.21574 0.97383 0.84173 0.95768 1.23892 0.97707 0.92674 0.95670 0.88897 1.23112 0.96566 0.99074 0.97563 1.23874 1.00265 0.91814 0.97063 1.69108 1.17156 1.18736 1.14943 1.22551 0.94583 0.97655 0.93568 1.21637 0.96674 0.96893 0.95445 1.22515 0.99019 0.98693 0.94419 1.22523 0.96465 1.00025 0.97236 1.22324 0.96897 1.00950 0.95274 1.22179 0.99139 0.99064 0.95732 1.19701 0.87335 0.84828 0.75999 1.90684 1.14846 1.86959 1.48757 1.23266 1.01675 0.94720 1.05829 1.84710 1.13651 0.98694 1.97471 1.22463 0.94315 0.92650 1.58058 0.92279 1.25499 1.02492 0.94725 0.92909 1.70017 1.36670 0.99499 1.49335 0.85912 0.80504 0.80114 0.80117 1.18920 1.16247 1.18091 0.91298 0.88292 0.91882 0.86989 0.91906 0.87963 0.89992 0.91069 0.89852 0.93396 0.92916 0.94364 0.90113 0.92516 0.92651 0.89855 0.91604 0.90356 0.93779 0.91648 0.88442 0.88054 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.29 10.24 127.77 1.31 2.60 16 2 N -0.61 -15.49 2.74 -846.77 -2.32 -17.80 16 3 C 0.13 2.74 5.58 86.38 0.48 3.23 16 4 C 0.01 0.20 3.37 42.19 0.14 0.34 16 5 H 0.09 1.32 7.77 -2.39 -0.02 1.30 16 6 C -0.13 -1.91 8.00 30.94 0.25 -1.66 16 7 C 0.00 -0.03 5.60 83.58 0.47 0.44 16 8 N -0.48 -11.93 5.01 -902.08 -4.52 -16.45 16 9 C 0.05 1.11 4.21 86.30 0.36 1.48 16 10 C -0.09 -2.35 3.15 -10.07 -0.03 -2.38 16 11 C -0.11 -2.26 4.68 31.67 0.15 -2.11 16 12 C -0.13 -2.35 6.91 31.88 0.22 -2.13 16 13 C -0.12 -2.26 6.83 31.67 0.22 -2.04 16 14 C -0.12 -3.10 6.46 31.32 0.20 -2.89 16 15 C 0.54 19.65 6.80 87.66 0.60 20.24 16 16 O -0.54 -23.96 14.87 -3.04 -0.05 -24.00 16 17 C -0.10 -4.23 4.71 71.24 0.34 -3.90 16 18 S -0.17 -9.09 18.54 -56.49 -1.05 -10.14 16 19 C -0.53 -31.66 10.04 67.96 0.68 -30.98 16 20 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 21 C 0.05 2.96 5.50 84.86 0.47 3.42 16 22 N -0.92 -56.92 13.97 21.65 0.30 -56.62 16 23 Si 0.91 46.48 27.74 68.60 1.90 48.39 16 24 H -0.26 -13.23 7.11 99.48 0.71 -12.52 16 25 H -0.24 -12.24 6.73 99.48 0.67 -11.57 16 26 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.10 1.11 8.07 -2.39 -0.02 1.09 16 29 H 0.06 1.26 6.44 -2.38 -0.02 1.25 16 30 H 0.11 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.06 1.66 7.15 -2.39 -0.02 1.64 16 32 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.49 7.94 -2.39 -0.02 1.47 16 34 H 0.07 1.48 7.48 -2.39 -0.02 1.46 16 35 H 0.08 1.22 6.09 -2.38 -0.01 1.21 16 36 H 0.05 1.40 7.68 -2.39 -0.02 1.38 16 37 H 0.05 1.05 7.42 -2.38 -0.02 1.04 16 38 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.08 1.37 5.81 -2.38 -0.01 1.35 16 40 H 0.06 1.27 7.45 -2.39 -0.02 1.26 16 41 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 43 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.06 1.55 7.67 -2.39 -0.02 1.53 16 47 H 0.10 3.79 7.40 -2.39 -0.02 3.78 16 48 H 0.10 3.89 8.11 -2.39 -0.02 3.87 16 49 H 0.28 15.87 8.31 -92.70 -0.77 15.10 16 Total: -1.00 -76.25 387.95 0.99 -75.26 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.87 Total: 17.72 kcal Atomic # 6 Polarization: -22.20 SS G_CDS: 5.85 Total: -16.35 kcal Atomic # 7 Polarization: -84.33 SS G_CDS: -6.54 Total: -90.87 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.00 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.90 Total: 48.39 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -1.05 Total: -10.14 kcal Total: -76.25 0.99 -75.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230816269.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.684 kcal (2) G-P(sol) polarization free energy of solvation -76.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds