Wall clock time and date at job start Tue Mar 31 2020 14:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00124 * 2 1 4 4 C 1.50694 * 109.46981 * 269.99890 * 3 2 1 5 5 H 1.07999 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00020 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99605 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00237 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47128 * 90.00003 * 8 6 4 10 10 H 1.48496 * 109.47682 * 210.00378 * 8 6 4 11 11 H 1.48501 * 109.46983 * 330.00131 * 8 6 4 12 12 C 1.39675 * 120.00090 * 179.97438 * 2 1 3 13 13 C 1.38917 * 120.07417 * 0.02562 * 12 2 1 14 14 C 1.38106 * 119.92192 * 179.97438 * 13 12 2 15 15 C 1.38281 * 120.07833 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.92613 * 180.02562 * 15 14 13 17 17 N 1.46903 * 109.47105 * 90.00091 * 16 15 14 18 18 C 1.46949 * 111.00455 * 189.99907 * 17 16 15 19 19 C 1.53490 * 109.68127 * 164.48414 * 18 17 16 20 20 C 1.50989 * 107.86600 * 49.30584 * 19 18 17 21 21 O 1.33548 * 128.68451 * 163.90802 * 20 19 18 22 22 C 1.34610 * 109.37057 * 180.25246 * 21 20 19 23 23 C 1.34851 * 108.50242 * 359.95077 * 22 21 20 24 24 C 1.35114 * 122.94048 * 344.08972 * 20 19 18 25 25 C 1.47261 * 111.01637 * 65.42976 * 17 16 15 26 26 C 1.38287 * 120.14779 * 0.27857 * 15 14 13 27 27 C 1.38102 * 120.07608 * 359.45066 * 26 15 14 28 28 H 1.08999 * 109.47338 * 269.99650 * 1 2 3 29 29 H 1.08995 * 109.47085 * 30.00031 * 1 2 3 30 30 H 1.09007 * 109.47031 * 150.00399 * 1 2 3 31 31 H 1.09000 * 109.46759 * 29.99521 * 3 2 1 32 32 H 1.08999 * 109.47244 * 149.99622 * 3 2 1 33 33 H 0.97000 * 119.99832 * 179.97438 * 7 6 4 34 34 H 1.07998 * 120.03444 * 359.94689 * 13 12 2 35 35 H 1.07999 * 119.95890 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47408 * 330.00365 * 16 15 14 37 37 H 1.09002 * 109.47343 * 210.00360 * 16 15 14 38 38 H 1.09007 * 109.43382 * 44.42050 * 18 17 16 39 39 H 1.09000 * 109.43652 * 284.55421 * 18 17 16 40 40 H 1.09002 * 109.78015 * 289.72022 * 19 18 17 41 41 H 1.08993 * 109.78715 * 168.90063 * 19 18 17 42 42 H 1.08000 * 125.75123 * 179.97438 * 22 21 20 43 43 H 1.07994 * 126.68394 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.49195 * 55.46049 * 25 17 16 45 45 H 1.08993 * 109.87151 * 294.87356 * 25 17 16 46 46 H 1.08004 * 119.95942 * 179.70505 * 26 15 14 47 47 H 1.07997 * 120.04113 * 180.27637 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.3079 4.2590 -3.9014 10 1 4.6980 4.2001 -3.4961 11 1 3.5562 2.2194 -4.3043 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4136 0.0005 14 6 2.1641 -3.6078 0.0005 15 6 3.5469 -3.6060 0.0000 16 6 4.3004 -4.9110 -0.0006 17 7 4.5447 -5.3348 -1.3858 18 6 5.0631 -6.7090 -1.4326 19 6 4.9436 -7.2582 -2.8608 20 6 5.5241 -6.2306 -3.8024 21 8 5.8990 -6.3821 -5.0752 22 6 6.3696 -5.2115 -5.5445 23 6 6.2949 -4.2943 -4.5588 24 6 5.7513 -4.9485 -3.4413 25 6 5.4457 -4.3952 -2.0744 26 6 4.2398 -2.4092 0.0053 27 6 3.5525 -1.2114 -0.0004 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6083 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0302 4.4439 -0.8504 34 1 0.3904 -2.4156 0.0010 35 1 1.6259 -4.5441 0.0001 36 1 3.7115 -5.6708 0.5132 37 1 5.2530 -4.7808 0.5130 38 1 4.4871 -7.3372 -0.7530 39 1 6.1100 -6.7123 -1.1291 40 1 3.8948 -7.4299 -3.1034 41 1 5.5000 -8.1916 -2.9450 42 1 6.7437 -5.0363 -6.5424 43 1 6.5941 -3.2583 -4.6176 44 1 6.3691 -4.2930 -1.5044 45 1 4.9632 -3.4227 -2.1710 46 1 5.3199 -2.4114 0.0097 47 1 4.0943 -0.2772 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231821268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:09 Heat of formation + Delta-G solvation = 59.223715 kcal Electronic energy + Delta-G solvation = -27224.180993 eV Core-core repulsion = 23566.633406 eV Total energy + Delta-G solvation = -3657.547587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.70319 -39.27148 -38.02024 -35.67480 -33.22815 -32.88530 -32.38245 -30.46248 -29.59002 -29.15336 -27.79035 -26.40052 -24.75885 -23.80044 -22.69647 -21.85134 -21.59962 -21.31330 -19.54679 -18.98152 -17.29349 -16.65183 -16.44616 -16.35550 -15.61925 -15.13366 -15.08962 -14.94032 -14.35553 -14.07945 -14.02737 -13.67382 -13.37750 -13.25966 -12.92122 -12.86150 -12.79767 -12.47519 -12.33212 -12.15764 -11.92318 -11.58396 -11.49682 -11.39578 -11.24414 -11.20265 -10.92663 -10.68950 -10.60249 -10.26154 -9.88460 -9.74611 -9.66748 -8.83891 -8.51138 -8.36964 -8.27466 -8.17198 -6.45967 -6.01766 -4.17744 1.71610 2.11964 2.22281 2.60698 2.90284 3.25745 3.32621 3.37640 3.83830 4.16150 4.41184 4.53761 4.63591 4.74640 4.93786 4.97811 5.08132 5.21042 5.21764 5.32608 5.36089 5.45948 5.48617 5.60057 5.63657 5.64272 5.75887 5.79843 5.83488 5.85763 5.99506 6.02451 6.08794 6.23129 6.29320 6.39616 6.44205 6.53779 6.65693 6.92423 6.94299 7.00555 7.11294 7.19314 7.21851 7.27988 7.36785 7.61340 7.80906 8.15449 8.27257 8.49592 8.91627 9.49164 10.95143 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003457 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.218993 B = 8097.985473 C = 9895.918845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.616 5.616 3 C 0.249 3.751 4 C -0.531 4.531 5 H 0.059 0.941 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.242 3.758 13 C -0.223 4.223 14 C -0.050 4.050 15 C -0.170 4.170 16 C 0.113 3.887 17 N -0.535 5.535 18 C 0.058 3.942 19 C -0.027 4.027 20 C -0.015 4.015 21 O -0.173 6.173 22 C -0.055 4.055 23 C -0.193 4.193 24 C -0.177 4.177 25 C 0.126 3.874 26 C -0.067 4.067 27 C -0.187 4.187 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.030 0.970 32 H 0.036 0.964 33 H 0.264 0.736 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.087 0.913 39 H 0.038 0.962 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.202 0.798 43 H 0.150 0.850 44 H 0.043 0.957 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -20.128 -1.426 20.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.321 5.321 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.135 3.865 13 C -0.246 4.246 14 C -0.070 4.070 15 C -0.173 4.173 16 C -0.013 4.013 17 N -0.259 5.259 18 C -0.070 4.070 19 C -0.065 4.065 20 C -0.066 4.066 21 O -0.069 6.069 22 C -0.122 4.122 23 C -0.213 4.213 24 C -0.178 4.178 25 C -0.001 4.001 26 C -0.087 4.087 27 C -0.210 4.210 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.073 0.927 31 H 0.048 0.952 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.095 0.905 37 H 0.054 0.946 38 H 0.106 0.894 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.218 0.782 43 H 0.167 0.833 44 H 0.061 0.939 45 H 0.117 0.883 46 H 0.125 0.875 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 2.596 -19.993 -1.760 20.237 hybrid contribution 1.002 0.894 -0.811 1.569 sum 3.598 -19.099 -2.572 19.604 Atomic orbital electron populations 1.21471 0.81509 1.01935 0.99664 1.47099 1.04384 1.04630 1.76010 1.19276 0.92056 0.78770 0.96952 1.21587 1.36358 1.06358 0.92681 0.92252 1.24954 0.95412 0.96291 0.97361 1.69929 1.38406 1.14347 1.30747 0.86538 0.77711 0.78720 0.84781 1.20607 1.21083 1.19773 1.17955 0.91480 0.85993 0.91066 1.20566 0.99016 0.91420 1.13581 1.20463 0.93148 0.96506 0.96864 1.19092 0.93598 0.93174 1.11401 1.20829 0.98012 0.95192 0.87286 1.61994 1.46549 1.01035 1.16369 1.22106 0.98784 0.90774 0.95352 1.20281 1.01171 0.94517 0.90508 1.22264 1.03921 0.97036 0.83367 1.83817 1.62741 1.35083 1.25234 1.24061 1.05134 0.82809 1.00243 1.21467 1.05708 1.01066 0.93050 1.20212 1.06142 0.93803 0.97679 1.20543 0.94098 0.96723 0.88783 1.20659 0.98390 0.91732 0.97895 1.20839 0.92709 0.98637 1.08802 0.94626 0.91486 0.92659 0.95239 0.94649 0.92660 0.86928 0.87328 0.90501 0.94643 0.89447 0.94346 0.88985 0.89805 0.78170 0.83266 0.93892 0.88328 0.87518 0.85146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.74 10.19 59.85 0.61 2.35 16 2 N -0.62 -13.22 2.99 -181.00 -0.54 -13.76 16 3 C 0.25 6.25 4.91 -5.20 -0.03 6.22 16 4 C -0.53 -14.52 9.39 -34.44 -0.32 -14.84 16 5 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.90 -25.62 13.29 55.43 0.74 -24.89 16 8 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.24 4.90 6.55 -83.78 -0.55 4.35 16 13 C -0.22 -3.89 9.21 -39.38 -0.36 -4.25 16 14 C -0.05 -0.79 9.69 -39.61 -0.38 -1.17 16 15 C -0.17 -2.58 4.87 -104.59 -0.51 -3.09 16 16 C 0.11 1.38 5.12 -4.98 -0.03 1.35 16 17 N -0.54 -6.68 4.62 -236.91 -1.09 -7.77 16 18 C 0.06 0.56 5.52 -3.54 -0.02 0.54 16 19 C -0.03 -0.26 6.52 -27.49 -0.18 -0.44 16 20 C -0.01 -0.19 7.31 -35.28 -0.26 -0.45 16 21 O -0.17 -2.22 10.64 6.83 0.07 -2.14 16 22 C -0.06 -0.63 12.10 29.53 0.36 -0.27 16 23 C -0.19 -2.50 10.90 -39.95 -0.44 -2.93 16 24 C -0.18 -2.45 6.04 -104.95 -0.63 -3.09 16 25 C 0.13 1.73 5.21 -4.83 -0.03 1.70 16 26 C -0.07 -1.13 8.09 -39.61 -0.32 -1.46 16 27 C -0.19 -3.76 9.21 -39.38 -0.36 -4.13 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 30 H 0.05 0.87 6.20 -51.93 -0.32 0.55 16 31 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 32 H 0.04 0.94 6.20 -51.93 -0.32 0.61 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.11 1.78 6.14 -52.49 -0.32 1.46 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.08 0.81 7.81 -51.93 -0.41 0.40 16 37 H 0.04 0.41 8.04 -51.93 -0.42 -0.01 16 38 H 0.09 0.66 7.82 -51.92 -0.41 0.25 16 39 H 0.04 0.36 8.07 -51.93 -0.42 -0.06 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.20 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 44 H 0.04 0.56 8.10 -51.93 -0.42 0.14 16 45 H 0.10 1.57 6.54 -51.93 -0.34 1.23 16 46 H 0.11 1.61 8.04 -52.48 -0.42 1.19 16 47 H 0.13 2.90 6.14 -52.49 -0.32 2.58 16 LS Contribution 378.63 15.07 5.71 5.71 Total: -1.00 -30.68 378.63 -10.72 -41.40 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.04 Total: 3.11 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -3.54 Total: -17.99 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: -0.90 Total: -46.42 kcal Atomic # 8 Polarization: -2.22 SS G_CDS: 0.07 Total: -2.14 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.68 -10.72 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231821268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.623 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds