Wall clock time and date at job start Tue Mar 31 2020 14:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46499 * 120.00124 * 2 1 4 4 C 1.50694 * 109.46981 * 269.99890 * 3 2 1 5 5 H 1.07999 * 120.00135 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00020 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99605 * 0.02562 * 6 4 3 8 8 Si 1.86793 * 120.00237 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47128 * 90.00003 * 8 6 4 10 10 H 1.48496 * 109.47682 * 210.00378 * 8 6 4 11 11 H 1.48501 * 109.46983 * 330.00131 * 8 6 4 12 12 C 1.39675 * 120.00090 * 179.97438 * 2 1 3 13 13 C 1.38917 * 120.07417 * 0.02562 * 12 2 1 14 14 C 1.38106 * 119.92192 * 179.97438 * 13 12 2 15 15 C 1.38281 * 120.07833 * 359.97438 * 14 13 12 16 16 C 1.50696 * 119.92613 * 180.02562 * 15 14 13 17 17 N 1.46903 * 109.47105 * 90.00091 * 16 15 14 18 18 C 1.46949 * 111.00455 * 189.99907 * 17 16 15 19 19 C 1.53490 * 109.68127 * 164.48414 * 18 17 16 20 20 C 1.50989 * 107.86600 * 49.30584 * 19 18 17 21 21 O 1.33548 * 128.68451 * 163.90802 * 20 19 18 22 22 C 1.34610 * 109.37057 * 180.25246 * 21 20 19 23 23 C 1.34851 * 108.50242 * 359.95077 * 22 21 20 24 24 C 1.35114 * 122.94048 * 344.08972 * 20 19 18 25 25 C 1.47261 * 111.01637 * 65.42976 * 17 16 15 26 26 C 1.38287 * 120.14779 * 0.27857 * 15 14 13 27 27 C 1.38102 * 120.07608 * 359.45066 * 26 15 14 28 28 H 1.08999 * 109.47338 * 269.99650 * 1 2 3 29 29 H 1.08995 * 109.47085 * 30.00031 * 1 2 3 30 30 H 1.09007 * 109.47031 * 150.00399 * 1 2 3 31 31 H 1.09000 * 109.46759 * 29.99521 * 3 2 1 32 32 H 1.08999 * 109.47244 * 149.99622 * 3 2 1 33 33 H 0.97000 * 119.99832 * 179.97438 * 7 6 4 34 34 H 1.07998 * 120.03444 * 359.94689 * 13 12 2 35 35 H 1.07999 * 119.95890 * 180.02562 * 14 13 12 36 36 H 1.08997 * 109.47408 * 330.00365 * 16 15 14 37 37 H 1.09002 * 109.47343 * 210.00360 * 16 15 14 38 38 H 1.09007 * 109.43382 * 44.42050 * 18 17 16 39 39 H 1.09000 * 109.43652 * 284.55421 * 18 17 16 40 40 H 1.09002 * 109.78015 * 289.72022 * 19 18 17 41 41 H 1.08993 * 109.78715 * 168.90063 * 19 18 17 42 42 H 1.08000 * 125.75123 * 179.97438 * 22 21 20 43 43 H 1.07994 * 126.68394 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.49195 * 55.46049 * 25 17 16 45 45 H 1.08993 * 109.87151 * 294.87356 * 25 17 16 46 46 H 1.08004 * 119.95942 * 179.70505 * 26 15 14 47 47 H 1.07997 * 120.04113 * 180.27637 * 27 26 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1260 2.8779 -1.6728 7 7 3.5533 3.6180 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.3079 4.2590 -3.9014 10 1 4.6980 4.2001 -3.4961 11 1 3.5562 2.2194 -4.3043 12 6 2.1634 -1.2096 0.0005 13 6 1.4704 -2.4136 0.0005 14 6 2.1641 -3.6078 0.0005 15 6 3.5469 -3.6060 0.0000 16 6 4.3004 -4.9110 -0.0006 17 7 4.5447 -5.3348 -1.3858 18 6 5.0631 -6.7090 -1.4326 19 6 4.9436 -7.2582 -2.8608 20 6 5.5241 -6.2306 -3.8024 21 8 5.8990 -6.3821 -5.0752 22 6 6.3696 -5.2115 -5.5445 23 6 6.2949 -4.2943 -4.5588 24 6 5.7513 -4.9485 -3.4413 25 6 5.4457 -4.3952 -2.0744 26 6 4.2398 -2.4092 0.0053 27 6 3.5525 -1.2114 -0.0004 28 1 -0.3634 -0.0001 1.0276 29 1 -0.3633 0.8899 -0.5138 30 1 -0.3633 -0.8901 -0.5138 31 1 1.6083 2.0283 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0302 4.4439 -0.8504 34 1 0.3904 -2.4156 0.0010 35 1 1.6259 -4.5441 0.0001 36 1 3.7115 -5.6708 0.5132 37 1 5.2530 -4.7808 0.5130 38 1 4.4871 -7.3372 -0.7530 39 1 6.1100 -6.7123 -1.1291 40 1 3.8948 -7.4299 -3.1034 41 1 5.5000 -8.1916 -2.9450 42 1 6.7437 -5.0363 -6.5424 43 1 6.5941 -3.2583 -4.6176 44 1 6.3691 -4.2930 -1.5044 45 1 4.9632 -3.4227 -2.1710 46 1 5.3199 -2.4114 0.0097 47 1 4.0943 -0.2772 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231821268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:08 Heat of formation + Delta-G solvation = 42.503608 kcal Electronic energy + Delta-G solvation = -27224.906031 eV Core-core repulsion = 23566.633406 eV Total energy + Delta-G solvation = -3658.272625 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.62879 -40.57975 -39.11945 -37.15194 -34.85366 -34.13096 -33.49984 -31.89219 -30.89223 -30.07592 -29.58972 -27.63660 -26.24691 -25.10215 -23.83311 -23.08022 -22.93965 -22.36448 -20.97731 -19.87844 -18.64860 -18.20499 -18.07992 -17.27334 -16.93381 -16.44312 -16.36525 -16.02683 -15.80385 -15.35098 -15.32164 -14.94558 -14.61077 -14.49385 -14.29468 -14.09680 -13.99571 -13.74267 -13.46175 -13.25006 -13.16716 -13.14138 -13.03310 -12.69772 -12.56246 -12.51822 -12.45864 -12.16607 -12.12106 -11.75481 -11.69315 -11.38493 -10.65695 -10.65243 -10.39720 -9.64152 -9.28459 -9.14325 -8.37236 -7.79345 -6.38835 0.72289 0.80502 0.85628 1.34508 1.35637 1.46811 1.62815 2.05792 2.32784 2.63955 2.83472 3.04533 3.31099 3.77225 3.86061 4.02828 4.07813 4.15337 4.21548 4.26616 4.36908 4.41822 4.44282 4.51389 4.61533 4.62964 4.67190 4.72360 4.77528 4.84619 4.87242 4.90165 4.94074 5.01921 5.04963 5.06115 5.14199 5.19923 5.33435 5.34656 5.58196 5.59211 5.68420 5.70217 5.89604 6.05149 6.06305 6.16007 6.23871 6.28557 6.50077 6.82218 6.94722 7.33090 8.81734 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003457 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.218993 B = 8097.985473 C = 9895.918845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.633 5.633 3 C 0.268 3.732 4 C -0.542 4.542 5 H 0.047 0.953 6 C 0.014 3.986 7 N -0.926 5.926 8 Si 0.959 3.041 9 H -0.269 1.269 10 H -0.277 1.277 11 H -0.274 1.274 12 C 0.212 3.788 13 C -0.219 4.219 14 C -0.047 4.047 15 C -0.156 4.156 16 C 0.116 3.884 17 N -0.544 5.544 18 C 0.058 3.942 19 C -0.026 4.026 20 C -0.021 4.021 21 O -0.180 6.180 22 C -0.046 4.046 23 C -0.224 4.224 24 C -0.207 4.207 25 C 0.132 3.868 26 C -0.068 4.068 27 C -0.217 4.217 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.267 0.733 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.107 0.893 37 H 0.043 0.957 38 H 0.118 0.882 39 H 0.041 0.959 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.238 0.762 43 H 0.149 0.851 44 H 0.043 0.957 45 H 0.067 0.933 46 H 0.116 0.884 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -23.661 -2.270 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.341 5.341 3 C 0.146 3.854 4 C -0.581 4.581 5 H 0.065 0.935 6 C -0.185 4.185 7 N -0.566 5.566 8 Si 0.784 3.216 9 H -0.194 1.194 10 H -0.203 1.203 11 H -0.199 1.199 12 C 0.108 3.892 13 C -0.242 4.242 14 C -0.066 4.066 15 C -0.159 4.159 16 C -0.011 4.011 17 N -0.269 5.269 18 C -0.069 4.069 19 C -0.064 4.064 20 C -0.072 4.072 21 O -0.076 6.076 22 C -0.112 4.112 23 C -0.244 4.244 24 C -0.209 4.209 25 C 0.004 3.996 26 C -0.087 4.087 27 C -0.240 4.240 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.027 0.973 32 H 0.028 0.972 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.125 0.875 37 H 0.061 0.939 38 H 0.136 0.864 39 H 0.059 0.941 40 H 0.116 0.884 41 H 0.128 0.872 42 H 0.254 0.746 43 H 0.167 0.833 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.134 0.866 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.148 -23.567 -2.597 23.807 hybrid contribution 1.201 1.867 -0.549 2.287 sum 3.349 -21.700 -3.146 22.181 Atomic orbital electron populations 1.21595 0.79426 1.02457 1.00977 1.46961 1.05622 1.03734 1.77769 1.18747 0.91034 0.80299 0.95318 1.21774 1.36467 1.06465 0.93351 0.93496 1.25752 0.95052 0.96300 1.01401 1.70032 1.38992 1.14779 1.32749 0.85536 0.78056 0.78210 0.79783 1.19442 1.20253 1.19926 1.18224 0.91584 0.86538 0.92897 1.20829 1.00063 0.90785 1.12505 1.20892 0.93348 0.97179 0.95164 1.19495 0.93995 0.93952 1.08422 1.20881 0.98449 0.94049 0.87684 1.61937 1.46626 1.02200 1.16111 1.22251 0.99454 0.89166 0.96045 1.20473 1.01655 0.94677 0.89549 1.22872 1.03268 0.97481 0.83587 1.83836 1.62787 1.35606 1.25388 1.24734 1.03472 0.81840 1.01173 1.21711 1.07083 1.01723 0.93868 1.20426 1.07603 0.94861 0.98009 1.20343 0.93996 0.95831 0.89407 1.20800 0.98996 0.91518 0.97384 1.20729 0.93262 0.98396 1.11617 0.92830 0.92623 0.90403 0.97281 0.97176 0.92360 0.85006 0.83717 0.87459 0.93891 0.86396 0.94073 0.88366 0.87175 0.74592 0.83272 0.93924 0.91504 0.86571 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.49 10.19 127.77 1.30 4.79 16 2 N -0.63 -28.33 2.99 -726.57 -2.17 -30.50 16 3 C 0.27 14.34 4.91 85.63 0.42 14.76 16 4 C -0.54 -31.09 9.39 25.60 0.24 -30.85 16 5 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 6 C 0.01 0.81 5.46 84.66 0.46 1.27 16 7 N -0.93 -54.96 13.29 21.45 0.28 -54.67 16 8 Si 0.96 44.85 29.54 68.60 2.03 46.88 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.78 7.11 99.48 0.71 -12.07 16 12 C 0.21 8.84 6.55 38.22 0.25 9.09 16 13 C -0.22 -7.34 9.21 22.40 0.21 -7.13 16 14 C -0.05 -1.33 9.69 22.25 0.22 -1.11 16 15 C -0.16 -4.46 4.87 -19.84 -0.10 -4.55 16 16 C 0.12 2.43 5.12 85.56 0.44 2.86 16 17 N -0.54 -12.13 4.62 -903.43 -4.17 -16.30 16 18 C 0.06 0.90 5.52 86.46 0.48 1.37 16 19 C -0.03 -0.42 6.52 30.10 0.20 -0.22 16 20 C -0.02 -0.51 7.31 25.06 0.18 -0.32 16 21 O -0.18 -4.29 10.64 1.54 0.02 -4.27 16 22 C -0.05 -0.97 12.10 67.04 0.81 -0.15 16 23 C -0.22 -5.77 10.90 22.03 0.24 -5.53 16 24 C -0.21 -5.65 6.04 -20.08 -0.12 -5.77 16 25 C 0.13 3.57 5.21 85.46 0.45 4.02 16 26 C -0.07 -2.33 8.09 22.25 0.18 -2.15 16 27 C -0.22 -9.29 9.21 22.40 0.21 -9.08 16 28 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 2.06 8.07 -2.39 -0.02 2.04 16 30 H 0.08 2.36 6.20 -2.38 -0.01 2.34 16 31 H 0.01 0.52 8.07 -2.39 -0.02 0.50 16 32 H 0.01 0.59 6.20 -2.39 -0.01 0.58 16 33 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.13 3.84 6.14 -2.91 -0.02 3.82 16 35 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 36 H 0.11 1.67 7.81 -2.39 -0.02 1.65 16 37 H 0.04 0.86 8.04 -2.39 -0.02 0.84 16 38 H 0.12 1.13 7.82 -2.38 -0.02 1.12 16 39 H 0.04 0.63 8.07 -2.39 -0.02 0.61 16 40 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.24 2.87 8.06 -2.91 -0.02 2.85 16 43 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 44 H 0.04 1.11 8.10 -2.39 -0.02 1.09 16 45 H 0.07 2.20 6.54 -2.39 -0.02 2.19 16 46 H 0.12 3.65 8.04 -2.91 -0.02 3.62 16 47 H 0.09 4.57 6.14 -2.91 -0.02 4.56 16 Total: -1.00 -70.20 378.63 3.00 -67.19 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.96 Total: 20.39 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 6.06 Total: -28.71 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -6.06 Total: -101.48 kcal Atomic # 8 Polarization: -4.29 SS G_CDS: 0.02 Total: -4.27 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -70.20 3.00 -67.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231821268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.698 kcal (2) G-P(sol) polarization free energy of solvation -70.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds