Wall clock time and date at job start Tue Mar 31 2020 14:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46497 * 119.99628 * 2 1 4 4 C 1.39666 * 120.00188 * 180.02562 * 2 1 3 5 5 C 1.38971 * 120.04427 * 180.02562 * 4 2 1 6 6 C 1.38121 * 120.03152 * 179.70265 * 5 4 2 7 7 C 1.38209 * 120.12963 * 0.54874 * 6 5 4 8 8 C 1.50697 * 119.95319 * 179.72208 * 7 6 5 9 9 N 1.46502 * 109.47383 * 256.44823 * 8 7 6 10 10 C 1.36942 * 119.99682 * 89.43836 * 9 8 7 11 11 H 1.08000 * 119.99782 * 158.91618 * 10 9 8 12 12 C 1.38809 * 119.99865 * 338.91076 * 10 9 8 13 13 N 1.31622 * 119.99768 * 49.17143 * 12 10 9 14 14 Si 1.86805 * 120.00002 * 229.16775 * 12 10 9 15 15 H 1.48498 * 109.47155 * 60.00577 * 14 12 10 16 16 H 1.48504 * 109.46814 * 180.02562 * 14 12 10 17 17 H 1.48498 * 109.47233 * 300.00343 * 14 12 10 18 18 C 1.46498 * 120.00270 * 269.44037 * 9 8 7 19 19 C 1.50703 * 109.46621 * 269.99768 * 18 9 8 20 20 C 1.38230 * 120.00013 * 90.00361 * 19 18 9 21 21 C 1.38246 * 120.00157 * 179.97438 * 20 19 18 22 22 C 1.38230 * 119.99556 * 0.08960 * 21 20 19 23 23 C 1.38230 * 120.00483 * 359.86405 * 22 21 20 24 24 C 1.38239 * 119.99893 * 269.97315 * 19 18 9 25 25 C 1.38776 * 120.08984 * 359.45328 * 7 6 5 26 26 O 1.35899 * 120.01238 * 180.29679 * 25 7 6 27 27 C 1.38606 * 119.96511 * 0.27271 * 25 7 6 28 28 H 1.08999 * 109.47226 * 269.99262 * 1 2 3 29 29 H 1.08992 * 109.47457 * 30.00098 * 1 2 3 30 30 H 1.09003 * 109.46753 * 150.00112 * 1 2 3 31 31 H 1.09001 * 109.47376 * 240.00157 * 3 2 1 32 32 H 1.09006 * 109.47286 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.47148 * 120.00237 * 3 2 1 34 34 H 1.08002 * 119.98526 * 359.97438 * 5 4 2 35 35 H 1.08003 * 119.93421 * 180.27072 * 6 5 4 36 36 H 1.09007 * 109.47146 * 136.45245 * 8 7 6 37 37 H 1.09001 * 109.47046 * 16.45211 * 8 7 6 38 38 H 0.97004 * 119.99461 * 172.85588 * 13 12 10 39 39 H 1.08999 * 109.47269 * 150.00267 * 18 9 8 40 40 H 1.09000 * 109.47228 * 29.99521 * 18 9 8 41 41 H 1.07999 * 120.00135 * 359.69446 * 20 19 18 42 42 H 1.07995 * 119.99854 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.99600 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.00830 * 180.02562 * 23 22 21 45 45 H 1.07993 * 119.99888 * 0.02562 * 24 19 18 46 46 H 0.96701 * 114.00474 * 95.11594 * 26 25 7 47 47 H 1.08007 * 120.06268 * 179.97438 * 27 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1634 -1.2095 -0.0005 5 6 3.5531 -1.2106 0.0000 6 6 4.2435 -2.4068 0.0057 7 6 3.5550 -3.6052 -0.0006 8 6 4.3123 -4.9081 -0.0007 9 7 4.2839 -5.4894 -1.3452 10 6 5.2624 -5.1719 -2.2492 11 1 5.4531 -5.8230 -3.0894 12 6 6.0089 -4.0131 -2.0855 13 7 6.5553 -3.7416 -0.9193 14 14 6.2380 -2.8392 -3.5204 15 1 4.9121 -2.3502 -3.9765 16 1 7.0696 -1.6868 -3.0893 17 1 6.9150 -3.5476 -4.6363 18 6 3.2088 -6.4102 -1.7226 19 6 3.6190 -7.8227 -1.3943 20 6 3.3266 -8.3565 -0.1532 21 6 3.7024 -9.6524 0.1478 22 6 4.3723 -10.4136 -0.7917 23 6 4.6638 -9.8802 -2.0331 24 6 4.2872 -8.5846 -2.3345 25 6 2.1672 -3.6103 -0.0012 26 8 1.4918 -4.7896 -0.0013 27 6 1.4705 -2.4121 -0.0012 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 2.8241 1.3266 -0.8900 32 1 1.4891 2.0972 0.0005 33 1 2.8241 1.3265 0.8900 34 1 4.0936 -0.2755 0.0004 35 1 5.3235 -2.4058 0.0105 36 1 3.8477 -5.5985 0.7034 37 1 5.3457 -4.7277 0.2954 38 1 7.1608 -2.9889 -0.8310 39 1 3.0178 -6.3268 -2.7925 40 1 2.3034 -6.1573 -1.1710 41 1 2.8086 -7.7597 0.5829 42 1 3.4743 -10.0693 1.1176 43 1 4.6662 -11.4259 -0.5563 44 1 5.1868 -10.4750 -2.7673 45 1 4.5155 -8.1676 -3.3041 46 1 1.2276 -5.0917 0.8785 47 1 0.3904 -2.4142 -0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232840352.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:09 Heat of formation + Delta-G solvation = 46.618708 kcal Electronic energy + Delta-G solvation = -28210.098233 eV Core-core repulsion = 24552.004052 eV Total energy + Delta-G solvation = -3658.094181 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.85442 -39.92005 -38.50544 -37.29926 -36.00426 -33.86619 -32.19988 -31.59890 -31.31133 -30.61790 -28.69975 -27.46696 -27.21122 -24.97372 -23.37445 -23.16049 -23.04864 -21.80133 -21.02607 -19.09325 -18.66159 -17.48427 -17.34710 -17.07818 -16.54552 -16.21317 -15.94138 -15.87931 -15.73714 -15.45695 -15.26439 -15.03536 -14.76931 -14.43226 -14.11427 -13.94411 -13.50582 -13.47008 -13.31952 -13.11953 -13.05625 -12.95365 -12.76328 -12.68523 -12.54039 -12.24559 -12.04990 -11.93190 -11.86203 -11.69358 -11.56659 -11.03723 -10.49663 -10.03679 -9.63581 -9.47961 -9.42492 -8.63193 -8.03023 -7.98843 -4.97519 0.60469 0.66522 0.68235 0.87699 1.37701 1.46341 1.55569 2.29648 2.48650 2.98488 3.05773 3.11869 3.50899 4.08664 4.14355 4.17727 4.22029 4.24651 4.33496 4.36080 4.41824 4.44221 4.50496 4.61567 4.69827 4.76283 4.81914 4.85383 4.85700 4.89757 4.98868 5.01540 5.09730 5.22568 5.32113 5.35584 5.45700 5.48283 5.69014 5.73788 5.74823 5.80105 5.86306 6.03005 6.06401 6.16621 6.33552 6.45642 6.48407 6.61136 7.09093 7.21360 7.99369 8.48278 8.99610 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012946 B = 0.004421 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.305674 B = 6332.201036 C = 7840.313012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.648 5.648 3 C 0.096 3.904 4 C 0.209 3.791 5 C -0.227 4.227 6 C -0.061 4.061 7 C -0.162 4.162 8 C 0.192 3.808 9 N -0.579 5.579 10 C -0.295 4.295 11 H 0.063 0.937 12 C 0.021 3.979 13 N -0.854 5.854 14 Si 0.878 3.122 15 H -0.305 1.305 16 H -0.290 1.290 17 H -0.285 1.285 18 C 0.175 3.825 19 C -0.097 4.097 20 C -0.122 4.122 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.131 4.131 24 C -0.131 4.131 25 C 0.147 3.853 26 O -0.494 6.494 27 C -0.239 4.239 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.061 0.939 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.030 0.970 37 H 0.084 0.916 38 H 0.259 0.741 39 H 0.029 0.971 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.143 0.857 43 H 0.144 0.856 44 H 0.133 0.867 45 H 0.101 0.899 46 H 0.397 0.603 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.629 0.709 6.479 13.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.362 5.362 3 C -0.046 4.046 4 C 0.107 3.893 5 C -0.250 4.250 6 C -0.080 4.080 7 C -0.167 4.167 8 C 0.067 3.933 9 N -0.298 5.298 10 C -0.423 4.423 11 H 0.081 0.919 12 C -0.180 4.180 13 N -0.496 5.496 14 Si 0.707 3.293 15 H -0.233 1.233 16 H -0.216 1.216 17 H -0.211 1.211 18 C 0.049 3.951 19 C -0.100 4.100 20 C -0.141 4.141 21 C -0.144 4.144 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.150 4.150 25 C 0.102 3.898 26 O -0.306 6.306 27 C -0.262 4.262 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.070 0.930 34 H 0.136 0.864 35 H 0.145 0.855 36 H 0.048 0.952 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.048 0.952 40 H 0.109 0.891 41 H 0.142 0.858 42 H 0.161 0.839 43 H 0.162 0.838 44 H 0.151 0.849 45 H 0.119 0.881 46 H 0.255 0.745 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -11.594 1.076 5.973 13.086 hybrid contribution 0.626 0.865 -0.839 1.357 sum -10.968 1.940 5.134 12.265 Atomic orbital electron populations 1.21760 0.78249 1.03212 1.01704 1.46469 1.05856 1.02735 1.81108 1.21658 0.97501 0.84808 1.00681 1.17623 0.90727 0.86374 0.94571 1.20790 0.92728 0.98324 1.13144 1.21456 1.01297 0.91429 0.93831 1.20893 0.93276 0.97958 1.04534 1.19844 0.99942 0.88472 0.85051 1.44053 1.24850 1.50262 1.10652 1.18925 1.16195 1.02569 1.04596 0.91898 1.24980 0.99054 0.98193 0.95798 1.70163 1.25383 1.28773 1.25307 0.86570 0.76395 0.81822 0.84476 1.23328 1.21595 1.21129 1.20097 0.91837 0.85064 0.98054 1.21084 0.97191 0.97024 0.94693 1.21168 1.01062 0.95974 0.95910 1.21419 0.98687 0.94133 1.00184 1.21358 0.99780 1.00896 0.93525 1.21339 1.00316 0.95149 0.98062 1.21136 0.99391 0.95052 0.99458 1.18096 0.89132 0.84904 0.97692 1.84749 1.75257 1.36054 1.34572 1.20885 1.00094 0.90525 1.14684 0.92594 0.89701 0.92005 0.94184 0.88184 0.92964 0.86394 0.85473 0.95211 0.89836 0.93046 0.95248 0.89116 0.85805 0.83882 0.83808 0.84937 0.88123 0.74473 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 10.16 127.77 1.30 3.11 16 2 N -0.65 -17.44 3.41 -747.34 -2.55 -19.99 16 3 C 0.10 2.09 9.40 127.77 1.20 3.29 16 4 C 0.21 7.26 6.55 38.20 0.25 7.51 16 5 C -0.23 -8.92 9.31 22.42 0.21 -8.71 16 6 C -0.06 -2.74 8.68 22.24 0.19 -2.54 16 7 C -0.16 -7.16 5.28 -19.74 -0.10 -7.27 16 8 C 0.19 9.07 4.93 85.63 0.42 9.49 16 9 N -0.58 -28.70 2.50 -710.67 -1.78 -30.48 16 10 C -0.30 -16.41 9.49 84.03 0.80 -15.61 16 11 H 0.06 3.61 8.06 -2.91 -0.02 3.58 16 12 C 0.02 1.16 4.24 84.86 0.36 1.51 16 13 N -0.85 -46.47 8.18 21.65 0.18 -46.29 16 14 Si 0.88 44.79 29.70 68.60 2.04 46.83 16 15 H -0.30 -16.39 7.11 99.48 0.71 -15.68 16 16 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 17 H -0.29 -14.38 7.11 99.48 0.71 -13.68 16 18 C 0.18 7.59 5.76 85.63 0.49 8.08 16 19 C -0.10 -3.80 5.46 -19.87 -0.11 -3.91 16 20 C -0.12 -4.11 9.70 22.27 0.22 -3.89 16 21 C -0.13 -3.60 10.05 22.27 0.22 -3.37 16 22 C -0.14 -3.82 10.05 22.27 0.22 -3.59 16 23 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 24 C -0.13 -5.00 9.70 22.27 0.22 -4.78 16 25 C 0.15 5.60 6.67 22.49 0.15 5.75 16 26 O -0.49 -16.01 9.84 -92.42 -0.91 -16.92 16 27 C -0.24 -8.22 9.14 22.49 0.21 -8.01 16 28 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.23 7.92 -2.39 -0.02 1.21 16 30 H 0.06 1.27 6.19 -2.39 -0.01 1.25 16 31 H 0.04 0.95 7.95 -2.39 -0.02 0.93 16 32 H 0.10 1.48 7.80 -2.38 -0.02 1.46 16 33 H 0.05 1.12 7.95 -2.39 -0.02 1.10 16 34 H 0.12 4.23 6.73 -2.91 -0.02 4.21 16 35 H 0.13 6.25 5.28 -2.91 -0.02 6.23 16 36 H 0.03 1.28 7.88 -2.38 -0.02 1.26 16 37 H 0.08 4.49 5.40 -2.39 -0.01 4.48 16 38 H 0.26 13.60 8.17 -92.71 -0.76 12.84 16 39 H 0.03 1.34 7.98 -2.39 -0.02 1.32 16 40 H 0.09 3.66 4.82 -2.39 -0.01 3.65 16 41 H 0.12 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 43 H 0.14 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.13 3.48 8.06 -2.91 -0.02 3.45 16 45 H 0.10 3.98 8.06 -2.91 -0.02 3.95 16 46 H 0.40 8.68 9.06 -74.06 -0.67 8.01 16 47 H 0.14 4.00 6.14 -2.91 -0.02 3.98 16 Total: -1.00 -66.96 375.33 3.78 -63.18 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.33 Total: 30.52 kcal Atomic # 6 Polarization: -33.32 SS G_CDS: 6.47 Total: -26.85 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -4.15 Total: -96.76 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.91 Total: -16.92 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.04 Total: 46.83 kcal Total: -66.96 3.78 -63.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232840352.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.797 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.178 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds