Wall clock time and date at job start Tue Mar 31 2020 14:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00352 * 2 1 4 4 C 1.53003 * 109.47432 * 293.95924 * 3 2 1 5 5 C 1.53001 * 109.47008 * 180.02562 * 4 3 2 6 6 N 1.46504 * 109.46678 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99712 * 179.97438 * 6 5 4 8 8 O 1.21286 * 120.00110 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00054 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47465 * 180.02562 * 9 7 6 11 11 C 1.76195 * 100.00261 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99776 * 359.97438 * 11 10 9 13 13 C 1.38800 * 120.00093 * 180.02562 * 11 10 9 14 14 N 1.31633 * 119.99729 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00162 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.47095 * 59.99607 * 15 13 11 17 17 H 1.48493 * 109.47482 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.47033 * 299.99758 * 15 13 11 19 19 C 1.46895 * 111.00019 * 123.95983 * 2 1 3 20 20 C 1.50705 * 109.47395 * 75.82809 * 19 2 1 21 21 C 1.29440 * 117.95682 * 264.07860 * 20 19 2 22 22 C 1.50071 * 124.07534 * 180.74976 * 21 20 19 23 23 C 1.53027 * 110.14341 * 342.86460 * 22 21 20 24 24 C 1.53396 * 108.43986 * 49.43945 * 23 22 21 25 25 C 1.50063 * 117.96497 * 84.34035 * 20 19 2 26 26 H 1.09000 * 109.46565 * 301.54625 * 1 2 3 27 27 H 1.09001 * 109.46827 * 61.53936 * 1 2 3 28 28 H 1.08996 * 109.47312 * 181.54141 * 1 2 3 29 29 H 1.09001 * 109.46775 * 53.96028 * 3 2 1 30 30 H 1.09006 * 109.47081 * 173.95544 * 3 2 1 31 31 H 1.08997 * 109.46771 * 299.99654 * 4 3 2 32 32 H 1.08998 * 109.46813 * 59.99341 * 4 3 2 33 33 H 1.08997 * 109.47067 * 299.99466 * 5 4 3 34 34 H 1.08992 * 109.47196 * 59.99969 * 5 4 3 35 35 H 0.97000 * 120.00264 * 359.97438 * 6 5 4 36 36 H 1.09001 * 109.47247 * 299.99902 * 9 7 6 37 37 H 1.08998 * 109.47564 * 59.99901 * 9 7 6 38 38 H 0.97005 * 119.99362 * 180.02562 * 14 13 11 39 39 H 1.08998 * 109.47136 * 315.82260 * 19 2 1 40 40 H 1.09005 * 109.46990 * 195.82474 * 19 2 1 41 41 H 1.07994 * 117.96680 * 0.72206 * 21 20 19 42 42 H 1.09003 * 109.36024 * 222.66351 * 22 21 20 43 43 H 1.08996 * 109.36041 * 103.06870 * 22 21 20 44 44 H 1.08995 * 109.64704 * 289.75047 * 23 22 21 45 45 H 1.09001 * 109.64077 * 169.11821 * 23 22 21 46 46 H 1.08999 * 109.64561 * 172.87894 * 24 23 22 47 47 H 1.09005 * 109.64299 * 52.24444 * 24 23 22 48 48 H 1.09005 * 109.35595 * 282.79747 * 25 20 19 49 49 H 1.08999 * 109.36069 * 42.51752 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0575 -1.3182 5 6 2.1805 3.4856 -1.3184 6 7 1.8314 4.1428 -2.5803 7 6 2.2129 5.4157 -2.8053 8 8 2.8448 6.0173 -1.9628 9 6 1.8543 6.0915 -4.1036 10 16 2.5035 7.7811 -4.1039 11 6 1.9546 8.3196 -5.6892 12 1 1.3947 7.6484 -6.3234 13 6 2.2427 9.6061 -6.1232 14 7 2.9257 10.4240 -5.3503 15 14 1.6614 10.1769 -7.8042 16 1 0.1797 10.1001 -7.8679 17 1 2.0939 11.5797 -8.0276 18 1 2.2479 9.3046 -8.8533 19 6 1.9955 -0.7661 1.1375 20 6 1.8507 -2.2403 0.8604 21 6 0.8119 -2.8482 1.3366 22 6 0.5397 -4.3132 1.1582 23 6 1.3937 -4.8729 0.0184 24 6 2.8460 -4.4307 0.2380 25 6 2.9229 -2.9135 0.0546 26 1 -0.3632 0.5377 0.8758 27 1 -0.3633 0.4898 -0.9035 28 1 -0.3634 -1.0272 0.0276 29 1 1.5613 1.9272 0.8310 30 1 3.0799 1.3443 0.1082 31 1 2.0658 1.5016 -2.1491 32 1 0.5472 2.0845 -1.4264 33 1 1.7466 4.0418 -0.4874 34 1 3.2647 3.4581 -1.2104 35 1 1.3256 3.6618 -3.2540 36 1 2.2886 5.5357 -4.9347 37 1 0.7700 6.1186 -4.2119 38 1 3.1267 11.3232 -5.6536 39 1 1.4376 -0.5091 2.0379 40 1 3.0488 -0.5252 1.2815 41 1 0.0968 -2.2650 1.8977 42 1 -0.5150 -4.4589 0.9245 43 1 0.7792 -4.8403 2.0816 44 1 1.0328 -4.4855 -0.9343 45 1 1.3381 -5.9615 0.0194 46 1 3.4924 -4.9210 -0.4898 47 1 3.1605 -4.6940 1.2480 48 1 2.7895 -2.6698 -0.9994 49 1 3.8994 -2.5605 0.3862 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234146794.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:42 Heat of formation + Delta-G solvation = -64.708139 kcal Electronic energy + Delta-G solvation = -24136.284265 eV Core-core repulsion = 20608.806541 eV Total energy + Delta-G solvation = -3527.477724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.177 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.63511 -40.01830 -38.25152 -36.21752 -34.58015 -33.52523 -32.01168 -31.60365 -30.38662 -28.12770 -27.69030 -26.59517 -24.27724 -23.55076 -22.24500 -22.03948 -21.43815 -19.80845 -18.41125 -17.76378 -17.43957 -17.06487 -16.87293 -16.66077 -16.41611 -16.26822 -15.69424 -15.47268 -15.25652 -14.77692 -14.66766 -14.55891 -14.35553 -14.29110 -13.75072 -13.47994 -13.22099 -13.16642 -13.13911 -12.99398 -12.86370 -12.82004 -12.61621 -12.58404 -12.44015 -12.19085 -11.73914 -11.69226 -11.61969 -11.27213 -11.12393 -11.05355 -10.92807 -10.27897 -10.11919 -9.73090 -9.26420 -8.66719 -8.34020 -6.12522 1.26491 1.30957 1.44627 1.47561 1.57404 1.61160 2.26266 2.30062 3.00036 3.07505 3.33046 3.77790 3.79830 3.93341 3.95849 4.08933 4.09453 4.16659 4.25927 4.30265 4.39925 4.45873 4.47572 4.51476 4.54021 4.60096 4.63952 4.68846 4.74153 4.75454 4.80352 4.82472 5.02840 5.04084 5.10528 5.12864 5.16573 5.21271 5.23234 5.36612 5.41999 5.45416 5.50733 5.76465 6.00332 6.08340 6.20080 6.21331 6.51489 7.07035 7.24769 8.74983 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.033209 B = 0.001504 C = 0.001483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.932705 B =18617.847012 C =18876.440044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.060 3.940 4 C -0.110 4.110 5 C 0.123 3.877 6 N -0.712 5.712 7 C 0.532 3.468 8 O -0.568 6.568 9 C -0.130 4.130 10 S -0.153 6.153 11 C -0.548 4.548 12 H 0.083 0.917 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 0.999 3.001 16 H -0.262 1.262 17 H -0.279 1.279 18 H -0.262 1.262 19 C 0.084 3.916 20 C -0.112 4.112 21 C -0.158 4.158 22 C -0.089 4.089 23 C -0.120 4.120 24 C -0.120 4.120 25 C -0.077 4.077 26 H 0.024 0.976 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.036 0.964 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.417 0.583 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.039 0.961 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.075 0.925 43 H 0.076 0.924 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 -33.557 11.788 36.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.264 5.264 3 C -0.069 4.069 4 C -0.148 4.148 5 C -0.001 4.001 6 N -0.366 5.366 7 C 0.318 3.682 8 O -0.447 6.447 9 C -0.281 4.281 10 S 0.074 5.926 11 C -0.696 4.696 12 H 0.102 0.898 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.187 1.187 17 H -0.204 1.204 18 H -0.186 1.186 19 C -0.043 4.043 20 C -0.112 4.112 21 C -0.177 4.177 22 C -0.125 4.125 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.114 4.114 26 H 0.043 0.957 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.254 0.746 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.098 0.902 41 H 0.117 0.883 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.088 0.912 47 H 0.081 0.919 48 H 0.087 0.913 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -4.865 -32.638 12.804 35.396 hybrid contribution -1.332 0.430 -1.140 1.805 sum -6.198 -32.208 11.664 34.812 Atomic orbital electron populations 1.22497 0.87012 1.02291 1.01026 1.61914 1.08402 1.12979 1.43110 1.22014 1.00635 0.87928 0.96280 1.21623 1.02029 0.92138 0.99017 1.21304 1.00145 0.93311 0.85380 1.45739 1.57814 1.12356 1.20732 1.20091 0.78375 0.82162 0.87600 1.90690 1.40947 1.65446 1.47589 1.23375 1.05832 1.00351 0.98517 1.85578 1.73899 1.07963 1.25163 1.23187 1.41554 1.02174 1.02707 0.89848 1.26135 0.94601 0.95528 1.02844 1.70185 1.38172 1.07533 1.38878 0.84995 0.78994 0.77301 0.76644 1.18654 1.20387 1.18642 1.21299 1.00590 0.91287 0.91158 1.20753 0.96880 0.94369 0.99228 1.22053 0.97300 0.96996 1.01362 1.20441 1.00356 0.92589 0.99156 1.21604 0.95149 1.00677 0.98337 1.21617 0.97009 0.95120 1.01960 1.20313 0.96896 0.94792 0.99388 0.95706 0.90690 0.91097 0.94580 0.90187 0.89808 0.90269 0.92660 0.92372 0.74610 0.87140 0.87144 0.91993 0.94229 0.90208 0.88307 0.90682 0.90557 0.92410 0.90924 0.91179 0.91859 0.91254 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.08 127.69 1.16 1.41 16 2 N -0.54 -7.63 4.68 -927.04 -4.34 -11.97 16 3 C 0.06 0.86 4.94 86.30 0.43 1.28 16 4 C -0.11 -1.61 5.25 30.60 0.16 -1.44 16 5 C 0.12 2.67 5.67 86.38 0.49 3.16 16 6 N -0.71 -17.86 5.56 -463.06 -2.57 -20.43 16 7 C 0.53 19.81 7.85 87.66 0.69 20.50 16 8 O -0.57 -26.76 15.86 -3.05 -0.05 -26.81 16 9 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 10 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 11 C -0.55 -31.47 9.50 67.95 0.65 -30.83 16 12 H 0.08 4.42 7.80 -2.91 -0.02 4.39 16 13 C 0.01 0.78 5.49 84.86 0.47 1.25 16 14 N -0.91 -56.26 13.22 21.65 0.29 -55.97 16 15 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 16 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 19 C 0.08 1.11 5.04 85.56 0.43 1.54 16 20 C -0.11 -1.44 5.06 -15.09 -0.08 -1.52 16 21 C -0.16 -1.88 8.08 27.04 0.22 -1.66 16 22 C -0.09 -0.85 6.12 29.66 0.18 -0.66 16 23 C -0.12 -1.15 6.01 30.74 0.18 -0.96 16 24 C -0.12 -1.20 6.01 30.73 0.18 -1.01 16 25 C -0.08 -0.94 5.80 29.66 0.17 -0.76 16 26 H 0.02 0.32 8.13 -2.39 -0.02 0.30 16 27 H 0.07 0.90 6.54 -2.39 -0.02 0.89 16 28 H 0.07 0.90 6.42 -2.39 -0.02 0.89 16 29 H 0.04 0.53 8.11 -2.39 -0.02 0.52 16 30 H 0.08 1.14 7.83 -2.38 -0.02 1.12 16 31 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.04 6.59 -2.39 -0.02 1.03 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.42 7.47 8.47 -92.71 -0.79 6.69 16 36 H 0.11 3.94 8.14 -2.40 -0.02 3.92 16 37 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 38 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 39 H 0.04 0.53 7.64 -2.39 -0.02 0.51 16 40 H 0.08 1.02 7.69 -2.38 -0.02 1.01 16 41 H 0.10 1.14 7.62 -2.91 -0.02 1.12 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.64 8.12 -2.39 -0.02 0.62 16 45 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 47 H 0.06 0.63 8.12 -2.38 -0.02 0.61 16 48 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 49 H 0.07 0.81 8.12 -2.39 -0.02 0.79 16 Total: -1.00 -74.94 403.77 0.09 -74.85 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.13 Total: 18.85 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 5.77 Total: -14.42 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -6.62 Total: -88.38 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.81 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -74.94 0.09 -74.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234146794.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.140 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds