Wall clock time and date at job start Tue Mar 31 2020 15:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47332 * 2 1 4 4 C 1.38286 * 119.94142 * 100.00012 * 3 2 1 5 5 C 1.38503 * 120.02425 * 180.02562 * 4 3 2 6 6 O 1.36041 * 120.04867 * 180.02562 * 5 4 3 7 7 C 1.42897 * 116.99972 * 359.97307 * 6 5 4 8 8 C 1.39176 * 119.90309 * 359.97438 * 5 4 3 9 9 O 1.35988 * 120.06053 * 179.97438 * 8 5 4 10 10 C 1.42906 * 117.00277 * 185.54296 * 9 8 5 11 11 H 1.09002 * 109.46808 * 35.71541 * 10 9 8 12 12 C 1.50695 * 109.47146 * 275.71339 * 10 9 8 13 13 H 1.07998 * 119.99912 * 120.00099 * 12 10 9 14 14 C 1.37877 * 120.00190 * 299.99497 * 12 10 9 15 15 N 1.31520 * 119.99846 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00331 * 180.02562 * 14 12 10 17 17 H 1.48511 * 109.46738 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47213 * 119.99757 * 16 14 12 19 19 H 1.48494 * 109.47143 * 240.00572 * 16 14 12 20 20 C 1.53001 * 109.47028 * 155.70952 * 10 9 8 21 21 N 1.46897 * 109.47510 * 294.20605 * 20 10 9 22 22 C 1.46905 * 109.47102 * 65.43325 * 21 20 10 23 23 C 1.46892 * 109.47393 * 185.43210 * 21 20 10 24 24 C 1.46903 * 109.47283 * 305.43837 * 21 20 10 25 25 C 1.38516 * 119.88213 * 0.25478 * 8 5 4 26 26 C 1.38407 * 119.93869 * 280.02141 * 3 2 1 27 27 F 1.35101 * 119.95035 * 0.02562 * 26 3 2 28 28 H 1.09004 * 109.47203 * 299.99907 * 1 2 3 29 29 H 1.08996 * 109.47169 * 60.00171 * 1 2 3 30 30 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46928 * 239.99497 * 2 1 3 32 32 H 1.09009 * 109.47258 * 120.00106 * 2 1 3 33 33 H 1.08003 * 119.99456 * 0.04502 * 4 3 2 34 34 H 1.09006 * 109.47464 * 300.00333 * 7 6 5 35 35 H 1.08995 * 109.47124 * 60.00582 * 7 6 5 36 36 H 1.09003 * 109.46962 * 180.02562 * 7 6 5 37 37 H 0.96992 * 119.99757 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.46777 * 174.21009 * 20 10 9 39 39 H 1.09001 * 109.47369 * 54.21075 * 20 10 9 40 40 H 1.08998 * 109.46967 * 53.12287 * 22 21 20 41 41 H 1.08998 * 109.47613 * 173.12702 * 22 21 20 42 42 H 1.08996 * 109.47057 * 293.13006 * 22 21 20 43 43 H 1.09005 * 109.47492 * 60.00151 * 23 21 20 44 44 H 1.09002 * 109.47256 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.47369 * 300.00151 * 23 21 20 46 46 H 1.08993 * 109.47051 * 59.99510 * 24 21 20 47 47 H 1.08996 * 109.46944 * 180.02562 * 24 21 20 48 48 H 1.09003 * 109.46513 * 299.99698 * 24 21 20 49 49 H 1.08002 * 120.02081 * 179.74608 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4586 2.0021 1.1801 5 6 2.9202 3.3079 1.1822 6 8 3.3401 3.8802 2.3427 7 6 3.2770 3.0762 3.5224 8 6 2.9547 4.0335 -0.0050 9 8 3.4068 5.3161 -0.0066 10 6 3.3007 6.0399 -1.2342 11 1 2.3858 5.7484 -1.7499 12 6 4.4899 5.7279 -2.1056 13 1 4.3443 5.2823 -3.0786 14 6 5.7638 6.0113 -1.6609 15 7 5.9412 6.5536 -0.4759 16 14 7.2379 5.6253 -2.7414 17 1 6.7725 5.0240 -4.0171 18 1 7.9832 6.8773 -3.0277 19 1 8.1294 4.6680 -2.0387 20 6 3.2640 7.5409 -0.9396 21 7 2.0324 7.8664 -0.2081 22 6 2.0615 7.2212 1.1114 23 6 1.9335 9.3222 -0.0392 24 6 0.8705 7.3811 -0.9648 25 6 2.5223 3.4489 -1.1839 26 6 2.0658 2.1416 -1.1811 27 9 1.6477 1.5705 -2.3319 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.4320 1.4376 2.1005 34 1 2.2451 2.7740 3.7015 35 1 3.8977 2.1899 3.3916 36 1 3.6397 3.6517 4.3741 37 1 6.8374 6.7526 -0.1629 38 1 3.2869 8.0958 -1.8775 39 1 4.1288 7.8138 -0.3348 40 1 2.9857 7.4861 1.6250 41 1 1.2089 7.5593 1.7001 42 1 2.0118 6.1394 0.9880 43 1 1.9118 9.8010 -1.0182 44 1 1.0198 9.5637 0.5041 45 1 2.7955 9.6823 0.5224 46 1 0.9440 6.3009 -1.0901 47 1 -0.0432 7.6231 -0.4222 48 1 0.8489 7.8598 -1.9438 49 1 2.5443 4.0113 -2.1057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234648788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:20 Heat of formation + Delta-G solvation = 7.937073 kcal Electronic energy + Delta-G solvation = -30570.104378 eV Core-core repulsion = 26531.333782 eV Total energy + Delta-G solvation = -4038.770596 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.51030 -43.34674 -41.14520 -39.09987 -37.91091 -34.94350 -34.01396 -31.77548 -30.75303 -30.39024 -30.18232 -29.60046 -27.85973 -27.78226 -25.20145 -24.48833 -23.79137 -22.25774 -21.82693 -19.58647 -19.00861 -18.63636 -18.29641 -18.18507 -17.85962 -17.43670 -16.77670 -16.60550 -16.12905 -15.99103 -15.47382 -15.35907 -15.29247 -15.05579 -14.80988 -14.69488 -14.58224 -14.18232 -14.13987 -14.09810 -13.94477 -13.73488 -13.51398 -13.42003 -13.24823 -13.11450 -12.85462 -12.61775 -12.47283 -12.40481 -12.16200 -11.80592 -11.76385 -11.62809 -11.37423 -11.20955 -10.72689 -10.17744 -9.40948 -8.35803 -7.76954 -5.99778 0.33236 0.41545 0.54032 2.09184 2.24382 2.26759 2.28319 2.35601 2.38483 2.45629 2.64695 2.81422 3.01489 3.15056 3.22144 3.41995 3.51686 3.58433 3.65666 3.69109 3.74944 3.76503 3.82116 3.86663 3.97181 4.13071 4.16433 4.22366 4.26053 4.29308 4.33285 4.42521 4.50830 4.59144 4.61907 4.69766 4.72550 4.93324 5.02461 5.06451 5.10346 5.27959 5.34766 5.48693 5.56927 5.95034 6.07960 6.23273 6.38054 6.88402 7.20427 7.85433 9.24799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.080 4.080 3 C -0.126 4.126 4 C -0.147 4.147 5 C 0.077 3.923 6 O -0.302 6.302 7 C 0.026 3.974 8 C 0.152 3.848 9 O -0.288 6.288 10 C 0.189 3.811 11 H 0.047 0.953 12 C -0.567 4.567 13 H 0.079 0.921 14 C 0.093 3.907 15 N -0.857 5.857 16 Si 0.902 3.098 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.274 1.274 20 C 0.000 4.000 21 N -0.273 5.273 22 C -0.042 4.042 23 C -0.040 4.040 24 C -0.047 4.047 25 C -0.204 4.204 26 C 0.102 3.898 27 F -0.139 7.139 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.052 0.948 35 H 0.054 0.946 36 H 0.099 0.901 37 H 0.278 0.722 38 H 0.123 0.877 39 H 0.160 0.840 40 H 0.120 0.880 41 H 0.097 0.903 42 H 0.135 0.865 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.116 0.884 46 H 0.117 0.883 47 H 0.110 0.890 48 H 0.116 0.884 49 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.350 8.106 5.853 16.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 C -0.127 4.127 4 C -0.166 4.166 5 C 0.031 3.969 6 O -0.216 6.216 7 C -0.069 4.069 8 C 0.104 3.896 9 O -0.202 6.202 10 C 0.135 3.865 11 H 0.064 0.936 12 C -0.604 4.604 13 H 0.097 0.903 14 C -0.118 4.118 15 N -0.490 5.490 16 Si 0.727 3.273 17 H -0.190 1.190 18 H -0.200 1.200 19 H -0.199 1.199 20 C -0.118 4.118 21 N 0.069 4.931 22 C -0.183 4.183 23 C -0.182 4.182 24 C -0.189 4.189 25 C -0.223 4.223 26 C 0.082 3.918 27 F -0.117 7.117 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.156 0.844 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.117 0.883 37 H 0.089 0.911 38 H 0.141 0.859 39 H 0.177 0.823 40 H 0.139 0.861 41 H 0.116 0.884 42 H 0.153 0.847 43 H 0.131 0.869 44 H 0.128 0.872 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.059 8.495 6.132 16.742 hybrid contribution 0.937 -0.629 -0.785 1.375 sum -12.122 7.865 5.347 15.407 Atomic orbital electron populations 1.21736 0.94618 1.01939 1.02057 1.20402 0.96279 0.91803 1.03201 1.19499 1.04171 0.97383 0.91638 1.20729 1.03688 0.93627 0.98585 1.18287 1.01324 0.91752 0.85491 1.86185 1.80949 1.40369 1.14062 1.23049 1.01244 0.96579 0.86053 1.17762 0.95156 0.86673 0.89959 1.86370 1.76788 1.19437 1.37594 1.20394 0.98406 0.84981 0.82749 0.93584 1.21248 0.89696 1.45743 1.03684 0.90280 1.25019 0.99870 0.92115 0.94753 1.69628 1.24468 1.38167 1.16737 0.86309 0.81202 0.79143 0.80607 1.18972 1.19998 1.19924 1.24846 0.85038 1.01376 1.00563 1.46393 1.16597 1.14014 1.16115 1.24346 1.07315 1.04798 0.81848 1.23991 1.07933 0.78438 1.07832 1.24065 0.88513 1.06155 1.00197 1.21076 1.06829 0.95307 0.99097 1.17154 1.01389 0.91686 0.81528 1.91471 1.87876 1.84737 1.47644 0.92660 0.92510 0.92197 0.90714 0.90823 0.84446 0.92975 0.92748 0.88280 0.91135 0.85892 0.82263 0.86125 0.88400 0.84718 0.86873 0.87249 0.86510 0.86412 0.87147 0.86592 0.83046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.05 9.89 37.16 0.37 0.32 16 2 C -0.08 -0.11 5.78 -27.89 -0.16 -0.27 16 3 C -0.13 -0.36 5.14 -104.55 -0.54 -0.90 16 4 C -0.15 -0.31 8.66 -39.47 -0.34 -0.65 16 5 C 0.08 0.24 6.70 -39.14 -0.26 -0.02 16 6 O -0.30 -0.79 10.28 -34.39 -0.35 -1.15 16 7 C 0.03 -0.02 9.81 101.05 0.99 0.97 16 8 C 0.15 0.54 6.14 -39.13 -0.24 0.30 16 9 O -0.29 -0.79 5.87 -34.22 -0.20 -0.99 16 10 C 0.19 0.21 1.35 -27.89 -0.04 0.17 16 11 H 0.05 -0.06 4.08 -51.93 -0.21 -0.27 16 12 C -0.57 -3.88 7.95 -34.44 -0.27 -4.16 16 13 H 0.08 0.64 7.81 -52.49 -0.41 0.23 16 14 C 0.09 0.83 5.24 -17.82 -0.09 0.74 16 15 N -0.86 -7.59 10.94 55.43 0.61 -6.98 16 16 Si 0.90 8.38 29.54 -169.99 -5.02 3.36 16 17 H -0.27 -2.63 7.11 56.52 0.40 -2.23 16 18 H -0.27 -2.63 7.11 56.52 0.40 -2.23 16 19 H -0.27 -3.00 7.11 56.52 0.40 -2.60 16 20 C 0.00 0.00 3.57 -3.82 -0.01 -0.01 16 21 N -0.27 2.53 0.05 -395.63 -0.02 2.51 16 22 C -0.04 0.33 7.25 60.07 0.44 0.77 16 23 C -0.04 0.48 8.00 60.06 0.48 0.96 16 24 C -0.05 0.50 7.52 60.07 0.45 0.95 16 25 C -0.20 -0.74 8.67 -39.39 -0.34 -1.09 16 26 C 0.10 0.42 7.23 -39.43 -0.29 0.13 16 27 F -0.14 -0.69 16.65 2.25 0.04 -0.65 16 28 H 0.05 -0.01 8.14 -51.93 -0.42 -0.43 16 29 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 30 H 0.06 -0.02 8.14 -51.93 -0.42 -0.45 16 31 H 0.07 0.15 7.94 -51.93 -0.41 -0.26 16 32 H 0.07 0.01 8.00 -51.92 -0.42 -0.40 16 33 H 0.14 -0.01 6.27 -52.48 -0.33 -0.34 16 34 H 0.05 -0.13 7.66 -51.93 -0.40 -0.53 16 35 H 0.05 -0.04 7.66 -51.93 -0.40 -0.44 16 36 H 0.10 -0.23 8.14 -51.93 -0.42 -0.66 16 37 H 0.28 2.65 8.31 -40.82 -0.34 2.31 16 38 H 0.12 -0.59 8.08 -51.93 -0.42 -1.01 16 39 H 0.16 -0.09 6.10 -51.93 -0.32 -0.41 16 40 H 0.12 -0.75 7.98 -51.93 -0.41 -1.16 16 41 H 0.10 -1.06 8.05 -51.93 -0.42 -1.48 16 42 H 0.13 -0.65 5.04 -51.93 -0.26 -0.91 16 43 H 0.11 -1.45 8.11 -51.93 -0.42 -1.87 16 44 H 0.11 -1.52 8.10 -51.93 -0.42 -1.94 16 45 H 0.12 -1.34 8.14 -51.93 -0.42 -1.76 16 46 H 0.12 -1.00 5.89 -51.93 -0.31 -1.31 16 47 H 0.11 -1.43 8.14 -51.93 -0.42 -1.85 16 48 H 0.12 -1.36 8.14 -51.93 -0.42 -1.78 16 49 H 0.15 0.50 5.67 -52.49 -0.30 0.20 16 LS Contribution 381.30 15.07 5.75 5.75 Total: 0.00 -16.86 381.30 -7.01 -23.87 By element: Atomic # 1 Polarization: -15.98 SS G_CDS: -7.94 Total: -23.92 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 0.14 Total: -1.79 kcal Atomic # 7 Polarization: -5.06 SS G_CDS: 0.59 Total: -4.47 kcal Atomic # 8 Polarization: -1.58 SS G_CDS: -0.55 Total: -2.14 kcal Atomic # 9 Polarization: -0.69 SS G_CDS: 0.04 Total: -0.65 kcal Atomic # 14 Polarization: 8.38 SS G_CDS: -5.02 Total: 3.36 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -16.86 -7.01 -23.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234648788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.804 kcal (2) G-P(sol) polarization free energy of solvation -16.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds