Wall clock time and date at job start Tue Mar 31 2020 15:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50694 * 109.47332 * 2 1 4 4 C 1.38286 * 119.94142 * 100.00012 * 3 2 1 5 5 C 1.38503 * 120.02425 * 180.02562 * 4 3 2 6 6 O 1.36041 * 120.04867 * 180.02562 * 5 4 3 7 7 C 1.42897 * 116.99972 * 359.97307 * 6 5 4 8 8 C 1.39176 * 119.90309 * 359.97438 * 5 4 3 9 9 O 1.35988 * 120.06053 * 179.97438 * 8 5 4 10 10 C 1.42906 * 117.00277 * 185.54296 * 9 8 5 11 11 H 1.09002 * 109.46808 * 35.71541 * 10 9 8 12 12 C 1.50695 * 109.47146 * 275.71339 * 10 9 8 13 13 H 1.07998 * 119.99912 * 120.00099 * 12 10 9 14 14 C 1.37877 * 120.00190 * 299.99497 * 12 10 9 15 15 N 1.31520 * 119.99846 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 120.00331 * 180.02562 * 14 12 10 17 17 H 1.48511 * 109.46738 * 0.02562 * 16 14 12 18 18 H 1.48494 * 109.47213 * 119.99757 * 16 14 12 19 19 H 1.48494 * 109.47143 * 240.00572 * 16 14 12 20 20 C 1.53001 * 109.47028 * 155.70952 * 10 9 8 21 21 N 1.46897 * 109.47510 * 294.20605 * 20 10 9 22 22 C 1.46905 * 109.47102 * 65.43325 * 21 20 10 23 23 C 1.46892 * 109.47393 * 185.43210 * 21 20 10 24 24 C 1.46903 * 109.47283 * 305.43837 * 21 20 10 25 25 C 1.38516 * 119.88213 * 0.25478 * 8 5 4 26 26 C 1.38407 * 119.93869 * 280.02141 * 3 2 1 27 27 F 1.35101 * 119.95035 * 0.02562 * 26 3 2 28 28 H 1.09004 * 109.47203 * 299.99907 * 1 2 3 29 29 H 1.08996 * 109.47169 * 60.00171 * 1 2 3 30 30 H 1.09004 * 109.47257 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46928 * 239.99497 * 2 1 3 32 32 H 1.09009 * 109.47258 * 120.00106 * 2 1 3 33 33 H 1.08003 * 119.99456 * 0.04502 * 4 3 2 34 34 H 1.09006 * 109.47464 * 300.00333 * 7 6 5 35 35 H 1.08995 * 109.47124 * 60.00582 * 7 6 5 36 36 H 1.09003 * 109.46962 * 180.02562 * 7 6 5 37 37 H 0.96992 * 119.99757 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.46777 * 174.21009 * 20 10 9 39 39 H 1.09001 * 109.47369 * 54.21075 * 20 10 9 40 40 H 1.08998 * 109.46967 * 53.12287 * 22 21 20 41 41 H 1.08998 * 109.47613 * 173.12702 * 22 21 20 42 42 H 1.08996 * 109.47057 * 293.13006 * 22 21 20 43 43 H 1.09005 * 109.47492 * 60.00151 * 23 21 20 44 44 H 1.09002 * 109.47256 * 180.02562 * 23 21 20 45 45 H 1.08999 * 109.47369 * 300.00151 * 23 21 20 46 46 H 1.08993 * 109.47051 * 59.99510 * 24 21 20 47 47 H 1.08996 * 109.46944 * 180.02562 * 24 21 20 48 48 H 1.09003 * 109.46513 * 299.99698 * 24 21 20 49 49 H 1.08002 * 120.02081 * 179.74608 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.4586 2.0021 1.1801 5 6 2.9202 3.3079 1.1822 6 8 3.3401 3.8802 2.3427 7 6 3.2770 3.0762 3.5224 8 6 2.9547 4.0335 -0.0050 9 8 3.4068 5.3161 -0.0066 10 6 3.3007 6.0399 -1.2342 11 1 2.3858 5.7484 -1.7499 12 6 4.4899 5.7279 -2.1056 13 1 4.3443 5.2823 -3.0786 14 6 5.7638 6.0113 -1.6609 15 7 5.9412 6.5536 -0.4759 16 14 7.2379 5.6253 -2.7414 17 1 6.7725 5.0240 -4.0171 18 1 7.9832 6.8773 -3.0277 19 1 8.1294 4.6680 -2.0387 20 6 3.2640 7.5409 -0.9396 21 7 2.0324 7.8664 -0.2081 22 6 2.0615 7.2212 1.1114 23 6 1.9335 9.3222 -0.0392 24 6 0.8705 7.3811 -0.9648 25 6 2.5223 3.4489 -1.1839 26 6 2.0658 2.1416 -1.1811 27 9 1.6477 1.5705 -2.3319 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 2.4320 1.4376 2.1005 34 1 2.2451 2.7740 3.7015 35 1 3.8977 2.1899 3.3916 36 1 3.6397 3.6517 4.3741 37 1 6.8374 6.7526 -0.1629 38 1 3.2869 8.0958 -1.8775 39 1 4.1288 7.8138 -0.3348 40 1 2.9857 7.4861 1.6250 41 1 1.2089 7.5593 1.7001 42 1 2.0118 6.1394 0.9880 43 1 1.9118 9.8010 -1.0182 44 1 1.0198 9.5637 0.5041 45 1 2.7955 9.6823 0.5224 46 1 0.9440 6.3009 -1.0901 47 1 -0.0432 7.6231 -0.4222 48 1 0.8489 7.8598 -1.9438 49 1 2.5443 4.0113 -2.1057 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234648788.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:19 Heat of formation + Delta-G solvation = 6.337647 kcal Electronic energy + Delta-G solvation = -30570.173734 eV Core-core repulsion = 26531.333782 eV Total energy + Delta-G solvation = -4038.839952 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 326.192 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.83762 -42.80220 -41.25425 -39.20058 -38.06460 -35.31797 -34.23485 -31.83331 -30.91077 -29.74950 -29.53037 -29.39610 -27.95787 -27.79414 -25.20053 -24.46430 -23.73708 -22.26782 -21.97000 -19.82918 -18.87528 -18.34606 -18.31604 -17.86167 -17.75750 -17.27384 -16.88798 -16.78833 -16.46453 -16.33532 -15.64520 -15.51765 -15.37485 -14.97201 -14.76314 -14.48005 -14.28764 -14.10041 -13.75809 -13.49063 -13.43472 -13.31144 -13.21558 -13.21217 -13.17352 -13.02020 -12.98207 -12.91034 -12.77957 -12.61090 -12.52501 -12.29821 -11.86398 -11.76255 -11.63515 -11.38133 -11.05353 -10.87066 -9.62969 -8.61489 -8.37343 -6.58517 0.18742 0.31478 1.01184 1.28468 1.42614 1.47354 2.24695 2.33405 2.40523 2.61021 2.83827 3.06264 3.11836 3.25201 3.36209 3.68122 3.76830 3.93754 4.06443 4.12985 4.17956 4.26206 4.29577 4.30039 4.34214 4.44669 4.45203 4.46263 4.48535 4.50365 4.61956 4.62859 4.67205 4.75070 4.80231 4.80390 4.81236 4.94318 4.98962 5.02702 5.10044 5.14702 5.28799 5.35049 5.40331 5.55166 5.73658 5.74887 6.22007 6.47224 6.84307 7.24446 8.56873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.145 4.145 5 C 0.073 3.927 6 O -0.318 6.318 7 C 0.018 3.982 8 C 0.139 3.861 9 O -0.287 6.287 10 C 0.183 3.817 11 H 0.069 0.931 12 C -0.567 4.567 13 H 0.058 0.942 14 C 0.075 3.925 15 N -0.862 5.862 16 Si 0.913 3.087 17 H -0.277 1.277 18 H -0.277 1.277 19 H -0.300 1.300 20 C 0.018 3.982 21 N -0.259 5.259 22 C -0.040 4.040 23 C -0.042 4.042 24 C -0.053 4.053 25 C -0.209 4.209 26 C 0.080 3.920 27 F -0.149 7.149 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.113 0.887 37 H 0.268 0.732 38 H 0.139 0.861 39 H 0.132 0.868 40 H 0.101 0.899 41 H 0.138 0.862 42 H 0.105 0.895 43 H 0.126 0.874 44 H 0.141 0.859 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.145 0.855 48 H 0.132 0.868 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 9.212 7.395 19.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.128 4.128 4 C -0.163 4.163 5 C 0.028 3.972 6 O -0.232 6.232 7 C -0.077 4.077 8 C 0.092 3.908 9 O -0.200 6.200 10 C 0.129 3.871 11 H 0.087 0.913 12 C -0.605 4.605 13 H 0.077 0.923 14 C -0.133 4.133 15 N -0.497 5.497 16 Si 0.743 3.257 17 H -0.202 1.202 18 H -0.203 1.203 19 H -0.228 1.228 20 C -0.102 4.102 21 N 0.083 4.917 22 C -0.182 4.182 23 C -0.182 4.182 24 C -0.194 4.194 25 C -0.228 4.228 26 C 0.061 3.939 27 F -0.128 7.128 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.179 0.821 34 H 0.091 0.909 35 H 0.072 0.928 36 H 0.132 0.868 37 H 0.078 0.922 38 H 0.157 0.843 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.156 0.844 42 H 0.123 0.877 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.128 0.872 46 H 0.112 0.888 47 H 0.163 0.837 48 H 0.150 0.850 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -15.722 9.612 7.671 19.960 hybrid contribution 1.709 -1.023 -1.247 2.350 sum -14.013 8.588 6.423 17.646 Atomic orbital electron populations 1.21706 0.93752 1.02540 1.01957 1.20461 0.97023 0.90842 1.03466 1.19725 1.03717 0.98029 0.91380 1.20971 1.02804 0.93367 0.99201 1.18438 1.01036 0.92064 0.85704 1.86170 1.80864 1.41457 1.14675 1.23305 1.02669 0.96580 0.85119 1.17950 0.95460 0.87160 0.90250 1.86409 1.76957 1.19163 1.37519 1.20491 0.96912 0.87609 0.82073 0.91326 1.21471 0.91368 1.44097 1.03554 0.92339 1.25096 0.99990 0.93356 0.94858 1.69704 1.23323 1.39950 1.16710 0.86210 0.81558 0.78005 0.79965 1.20202 1.20301 1.22756 1.24101 0.86810 0.97805 1.01518 1.46007 1.14730 1.15893 1.15057 1.24245 1.08150 1.03155 0.82604 1.24209 1.09217 0.75696 1.09126 1.24263 0.88815 1.04784 1.01560 1.21053 1.07245 0.95374 0.99152 1.17386 1.02599 0.92149 0.81786 1.91437 1.88148 1.84906 1.48267 0.91728 0.93628 0.91225 0.91786 0.89194 0.82082 0.90941 0.92804 0.86844 0.92178 0.84332 0.84978 0.88057 0.84402 0.87664 0.85518 0.84104 0.87207 0.88801 0.83729 0.84966 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.04 9.89 71.98 0.71 0.67 16 2 C -0.08 -0.21 5.78 29.85 0.17 -0.04 16 3 C -0.13 -0.79 5.14 -19.81 -0.10 -0.89 16 4 C -0.14 -0.58 8.66 22.34 0.19 -0.38 16 5 C 0.07 0.50 6.70 22.56 0.15 0.65 16 6 O -0.32 -1.72 10.28 -80.14 -0.82 -2.54 16 7 C 0.02 -0.05 9.81 113.37 1.11 1.07 16 8 C 0.14 1.17 6.14 22.56 0.14 1.30 16 9 O -0.29 -1.96 5.87 -79.53 -0.47 -2.42 16 10 C 0.18 0.60 1.35 29.85 0.04 0.64 16 11 H 0.07 -0.11 4.08 -2.39 -0.01 -0.12 16 12 C -0.57 -8.94 7.95 25.60 0.20 -8.74 16 13 H 0.06 1.11 7.81 -2.91 -0.02 1.09 16 14 C 0.07 1.52 5.24 84.65 0.44 1.96 16 15 N -0.86 -17.17 10.94 21.45 0.23 -16.94 16 16 Si 0.91 19.64 29.54 68.60 2.03 21.66 16 17 H -0.28 -6.32 7.11 99.48 0.71 -5.61 16 18 H -0.28 -5.95 7.11 99.48 0.71 -5.24 16 19 H -0.30 -7.66 7.11 99.48 0.71 -6.95 16 20 C 0.02 -0.13 3.57 86.30 0.31 0.18 16 21 N -0.26 5.15 0.05 ******* -0.07 5.08 16 22 C -0.04 0.66 7.25 127.69 0.93 1.59 16 23 C -0.04 1.12 8.00 127.69 1.02 2.14 16 24 C -0.05 1.24 7.52 127.69 0.96 2.20 16 25 C -0.21 -1.89 8.67 22.39 0.19 -1.70 16 26 C 0.08 0.77 7.23 22.37 0.16 0.94 16 27 F -0.15 -1.75 16.65 44.97 0.75 -1.00 16 28 H 0.06 -0.10 8.14 -2.38 -0.02 -0.12 16 29 H 0.04 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.06 0.31 7.94 -2.39 -0.02 0.29 16 32 H 0.09 -0.07 8.00 -2.38 -0.02 -0.09 16 33 H 0.16 -0.25 6.27 -2.91 -0.02 -0.27 16 34 H 0.07 -0.49 7.66 -2.38 -0.02 -0.50 16 35 H 0.05 -0.13 7.66 -2.39 -0.02 -0.15 16 36 H 0.11 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.27 5.78 8.31 -92.71 -0.77 5.01 16 38 H 0.14 -1.42 8.08 -2.39 -0.02 -1.43 16 39 H 0.13 -0.02 6.10 -2.39 -0.01 -0.03 16 40 H 0.10 -1.21 7.98 -2.39 -0.02 -1.23 16 41 H 0.14 -3.37 8.05 -2.39 -0.02 -3.39 16 42 H 0.11 -0.99 5.04 -2.39 -0.01 -1.00 16 43 H 0.13 -3.61 8.11 -2.38 -0.02 -3.63 16 44 H 0.14 -4.51 8.10 -2.39 -0.02 -4.53 16 45 H 0.11 -2.66 8.14 -2.39 -0.02 -2.68 16 46 H 0.09 -1.64 5.89 -2.39 -0.01 -1.66 16 47 H 0.14 -4.27 8.14 -2.39 -0.02 -4.29 16 48 H 0.13 -3.44 8.14 -2.39 -0.02 -3.46 16 49 H 0.15 1.30 5.67 -2.91 -0.02 1.29 16 Total: 0.00 -43.19 381.30 9.22 -33.97 By element: Atomic # 1 Polarization: -40.33 SS G_CDS: 0.94 Total: -39.40 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: 6.64 Total: 1.58 kcal Atomic # 7 Polarization: -12.02 SS G_CDS: 0.17 Total: -11.86 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -1.29 Total: -4.96 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.75 Total: -1.00 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: 2.03 Total: 21.66 kcal Total: -43.19 9.22 -33.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234648788.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.306 kcal (2) G-P(sol) polarization free energy of solvation -43.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds