Wall clock time and date at job start Tue Mar 31 2020 15:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47393 * 2 1 4 4 C 1.50699 * 109.47110 * 120.00625 * 2 1 3 5 5 N 1.30917 * 126.48348 * 299.95479 * 4 2 1 6 6 N 1.28984 * 109.75601 * 179.97438 * 5 4 2 7 7 C 1.29632 * 109.47473 * 359.94628 * 6 5 4 8 8 N 1.34415 * 126.48474 * 119.99465 * 4 2 1 9 9 C 1.46313 * 129.75878 * 0.21460 * 8 4 2 10 10 C 1.53468 * 108.17927 * 163.66270 * 9 8 4 11 11 N 1.46969 * 109.73398 * 49.59498 * 10 9 8 12 12 C 1.46902 * 111.00192 * 53.38637 * 11 10 9 13 13 C 1.50700 * 109.46893 * 164.36430 * 12 11 10 14 14 C 1.37637 * 120.12476 * 103.11517 * 13 12 11 15 15 C 1.38607 * 120.25011 * 180.02562 * 14 13 12 16 16 C 1.38661 * 120.50238 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.24323 * 359.73340 * 16 15 14 18 18 C 1.40689 * 120.13222 * 283.12909 * 13 12 11 19 19 C 1.41400 * 120.24240 * 359.96302 * 18 13 12 20 20 H 1.07999 * 120.00255 * 29.04475 * 19 18 13 21 21 C 1.39949 * 119.99939 * 209.32301 * 19 18 13 22 22 N 1.30825 * 119.99868 * 10.02960 * 21 19 18 23 23 Si 1.86799 * 120.00110 * 190.03972 * 21 19 18 24 24 H 1.48502 * 109.47114 * 4.99395 * 23 21 19 25 25 H 1.48496 * 109.47694 * 124.99903 * 23 21 19 26 26 H 1.48499 * 109.46928 * 245.00192 * 23 21 19 27 27 C 1.47393 * 111.24819 * 289.25286 * 11 10 9 28 28 H 1.09003 * 109.46289 * 299.99707 * 1 2 3 29 29 H 1.08994 * 109.46938 * 59.99195 * 1 2 3 30 30 H 1.08994 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46289 * 240.00293 * 2 1 3 32 32 H 1.08993 * 109.47109 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46996 * 300.00329 * 3 2 1 34 34 H 1.08996 * 109.46579 * 60.00531 * 3 2 1 35 35 H 1.09001 * 109.72359 * 43.98554 * 9 8 4 36 36 H 1.09009 * 109.75224 * 283.34999 * 9 8 4 37 37 H 1.08997 * 109.41863 * 289.51545 * 10 9 8 38 38 H 1.08996 * 109.38269 * 169.65323 * 10 9 8 39 39 H 1.09006 * 109.46887 * 44.36856 * 12 11 10 40 40 H 1.08994 * 109.47206 * 284.36749 * 12 11 10 41 41 H 1.08005 * 119.87551 * 0.02562 * 14 13 12 42 42 H 1.08005 * 119.75307 * 179.97438 * 15 14 13 43 43 H 1.07998 * 119.87921 * 179.97438 * 16 15 14 44 44 H 1.07999 * 120.12882 * 180.28010 * 17 16 15 45 45 H 0.97004 * 119.99743 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.75091 * 169.70240 * 27 11 10 47 47 H 1.09001 * 109.74749 * 290.43937 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7963 -0.3754 2.4737 6 7 2.3824 -1.2058 3.2679 7 6 3.0114 -2.0997 2.5709 8 7 2.8082 -1.8078 1.2589 9 6 3.3655 -2.5888 0.1542 10 6 4.4898 -3.4721 0.7117 11 7 4.0128 -4.1902 1.9020 12 6 2.7725 -4.9224 1.6133 13 6 2.5212 -5.9337 2.7020 14 6 1.5751 -5.6856 3.6703 15 6 1.3422 -6.6137 4.6731 16 6 2.0573 -7.8010 4.7131 17 6 3.0038 -8.0727 3.7521 18 6 3.2531 -7.1349 2.7328 19 6 4.2273 -7.4008 1.7430 20 1 4.7517 -6.5847 1.2684 21 6 4.5078 -8.7214 1.3743 22 7 3.7412 -9.6947 1.7944 23 14 5.9769 -9.0943 0.2824 24 1 6.7469 -7.8469 0.0456 25 1 6.8482 -10.0948 0.9495 26 1 5.5033 -9.6376 -1.0159 27 6 3.8319 -3.2736 3.0420 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6769 1.9562 0.8900 35 1 3.7671 -1.9176 -0.6049 36 1 2.5880 -3.2154 -0.2830 37 1 5.3412 -2.8474 0.9820 38 1 4.7949 -4.1918 -0.0479 39 1 2.8677 -5.4352 0.6561 40 1 1.9388 -4.2217 1.5688 41 1 1.0119 -4.7643 3.6486 42 1 0.5981 -6.4106 5.4291 43 1 1.8680 -8.5169 5.4993 44 1 3.5565 -9.0000 3.7824 45 1 3.9358 -10.6101 1.5391 46 1 3.3099 -3.7879 3.8489 47 1 4.8036 -2.9264 3.3933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235522722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:06 Heat of formation + Delta-G solvation = 99.475635 kcal Electronic energy + Delta-G solvation = -28389.306273 eV Core-core repulsion = 24765.796891 eV Total energy + Delta-G solvation = -3623.509382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.25743 -38.77288 -37.17640 -35.96172 -33.96483 -33.60649 -31.03975 -30.66461 -29.47069 -28.83795 -27.41010 -26.40185 -25.25464 -24.33341 -23.54806 -22.62365 -20.93766 -20.29456 -19.99113 -18.84420 -17.13794 -17.07125 -16.53017 -15.73941 -15.28389 -15.07425 -14.86641 -14.77656 -14.46410 -14.19358 -13.81023 -13.51882 -13.34219 -13.30239 -12.76363 -12.63098 -12.38942 -12.03061 -11.84334 -11.69663 -11.65528 -11.48482 -11.42465 -11.34441 -11.29152 -11.18487 -11.08418 -10.91516 -10.58742 -10.38018 -10.18852 -10.02709 -9.56240 -9.36136 -9.23281 -8.84001 -8.21492 -7.39782 -7.29626 -6.70630 -4.36436 1.91731 2.47005 2.74701 2.91659 3.00803 3.06379 3.10373 3.21859 3.92701 4.08999 4.11137 4.36445 4.43607 4.59496 4.66810 4.75008 4.84914 4.92028 5.02445 5.27401 5.39631 5.41943 5.49639 5.58341 5.60089 5.67097 5.70154 5.71828 5.83298 5.87824 5.99345 6.03623 6.08222 6.15891 6.23420 6.31425 6.37291 6.47810 6.77643 6.93713 7.04507 7.18043 7.26636 7.27884 7.41268 7.63554 7.89619 8.07225 8.11912 8.30690 8.66502 8.89342 8.92980 8.99289 10.23143 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.003848 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.637942 B = 7274.287202 C = 8352.074530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.003 4.003 3 C -0.140 4.140 4 C 0.177 3.823 5 N -0.299 5.299 6 N -0.290 5.290 7 C 0.156 3.844 8 N -0.468 5.468 9 C 0.064 3.936 10 C 0.041 3.959 11 N -0.509 5.509 12 C 0.123 3.877 13 C -0.197 4.197 14 C -0.086 4.086 15 C -0.237 4.237 16 C -0.107 4.107 17 C -0.157 4.157 18 C 0.132 3.868 19 C -0.448 4.448 20 H 0.089 0.911 21 C 0.071 3.929 22 N -0.803 5.803 23 Si 0.906 3.094 24 H -0.260 1.260 25 H -0.275 1.275 26 H -0.277 1.277 27 C 0.139 3.861 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.080 0.920 40 H 0.018 0.982 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.120 0.880 45 H 0.277 0.723 46 H 0.118 0.882 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.599 12.778 -7.863 15.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 C -0.198 4.198 4 C -0.090 4.090 5 N -0.139 5.139 6 N -0.130 5.130 7 C -0.114 4.114 8 N -0.160 5.160 9 C -0.061 4.061 10 C -0.089 4.089 11 N -0.230 5.230 12 C -0.002 4.002 13 C -0.199 4.199 14 C -0.105 4.105 15 C -0.257 4.257 16 C -0.126 4.126 17 C -0.176 4.176 18 C 0.129 3.871 19 C -0.478 4.478 20 H 0.107 0.893 21 C -0.145 4.145 22 N -0.430 5.430 23 Si 0.731 3.269 24 H -0.184 1.184 25 H -0.200 1.200 26 H -0.202 1.202 27 C 0.008 3.992 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.100 0.900 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.125 0.875 39 H 0.098 0.902 40 H 0.036 0.964 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.138 0.862 45 H 0.088 0.912 46 H 0.136 0.864 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.418 12.909 -6.596 14.503 hybrid contribution 0.383 -0.521 -1.847 1.957 sum 0.801 12.388 -8.443 15.013 Atomic orbital electron populations 1.21794 0.92725 1.02477 1.02909 1.19518 0.96872 0.95637 0.90349 1.21786 1.00980 0.94057 1.02942 1.24502 0.97255 0.89363 0.97900 1.74438 1.20396 1.21631 0.97446 1.73987 1.10471 1.02762 1.25735 1.25968 1.02933 1.01617 0.80851 1.45988 1.38765 1.22598 1.08600 1.22849 0.99379 0.95299 0.88559 1.22692 0.95373 0.96182 0.94605 1.62493 1.32891 1.23681 1.03887 1.20737 0.87034 0.93206 0.99257 1.19369 1.02304 0.98605 0.99584 1.20383 0.97773 0.97112 0.95210 1.20339 1.05971 0.97253 1.02102 1.20727 0.97586 0.95936 0.98308 1.21436 1.00339 1.01267 0.94580 1.17361 0.89651 0.89329 0.90708 1.19714 1.17987 0.92184 1.17943 0.89334 1.25950 0.96298 0.96293 0.95998 1.69814 1.34096 1.01083 1.38000 0.86300 0.81615 0.79300 0.79677 1.18407 1.20036 1.20240 1.21090 0.97738 0.84807 0.95562 0.91206 0.91563 0.92584 0.90033 0.92765 0.91589 0.91204 0.88759 0.88964 0.89860 0.87501 0.90211 0.96403 0.90085 0.89684 0.89582 0.86225 0.91184 0.86413 0.88109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.18 37.16 0.34 -1.00 16 2 C 0.00 -0.03 3.32 -91.77 -0.30 -0.33 16 3 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.18 2.54 6.59 -155.64 -1.03 1.51 16 5 N -0.30 -5.26 12.24 32.66 0.40 -4.86 16 6 N -0.29 -5.48 12.20 32.76 0.40 -5.08 16 7 C 0.16 2.60 7.02 -155.28 -1.09 1.51 16 8 N -0.47 -6.66 2.88 -110.79 -0.32 -6.98 16 9 C 0.06 0.70 5.87 -3.90 -0.02 0.68 16 10 C 0.04 0.49 5.90 -3.54 -0.02 0.47 16 11 N -0.51 -8.24 4.41 -236.69 -1.04 -9.28 16 12 C 0.12 2.27 3.18 -4.98 -0.02 2.26 16 13 C -0.20 -4.37 4.79 -103.92 -0.50 -4.87 16 14 C -0.09 -1.90 8.65 -39.66 -0.34 -2.24 16 15 C -0.24 -5.32 10.05 -39.29 -0.39 -5.71 16 16 C -0.11 -2.49 10.02 -39.66 -0.40 -2.88 16 17 C -0.16 -3.95 8.66 -38.87 -0.34 -4.28 16 18 C 0.13 3.26 5.55 -106.83 -0.59 2.67 16 19 C -0.45 -10.82 8.16 -37.74 -0.31 -11.13 16 20 H 0.09 2.03 6.80 -52.49 -0.36 1.68 16 21 C 0.07 1.67 5.27 -17.34 -0.09 1.58 16 22 N -0.80 -19.99 10.82 55.55 0.60 -19.39 16 23 Si 0.91 17.78 29.57 -169.99 -5.03 12.75 16 24 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 25 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.28 -5.40 7.11 56.52 0.40 -4.99 16 27 C 0.14 2.24 6.09 -4.67 -0.03 2.22 16 28 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.68 7.58 -51.93 -0.39 0.28 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 36 H 0.09 1.01 7.33 -51.92 -0.38 0.63 16 37 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 38 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.49 7.42 -51.93 -0.39 1.10 16 40 H 0.02 0.33 6.32 -51.93 -0.33 0.00 16 41 H 0.08 1.71 8.01 -52.48 -0.42 1.29 16 42 H 0.08 1.74 8.06 -52.48 -0.42 1.31 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 44 H 0.12 3.13 6.21 -52.49 -0.33 2.81 16 45 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 46 H 0.12 2.15 6.41 -51.93 -0.33 1.82 16 47 H 0.10 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 372.66 15.07 5.62 5.62 Total: -1.00 -29.13 372.66 -11.28 -40.41 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.12 Total: 7.24 kcal Atomic # 6 Polarization: -15.64 SS G_CDS: -4.79 Total: -20.43 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.04 Total: -45.59 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.13 -11.28 -40.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.886 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds