Wall clock time and date at job start Tue Mar 31 2020 15:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47393 * 2 1 4 4 C 1.50699 * 109.47110 * 120.00625 * 2 1 3 5 5 N 1.30917 * 126.48348 * 299.95479 * 4 2 1 6 6 N 1.28984 * 109.75601 * 179.97438 * 5 4 2 7 7 C 1.29632 * 109.47473 * 359.94628 * 6 5 4 8 8 N 1.34415 * 126.48474 * 119.99465 * 4 2 1 9 9 C 1.46313 * 129.75878 * 0.21460 * 8 4 2 10 10 C 1.53468 * 108.17927 * 163.66270 * 9 8 4 11 11 N 1.46969 * 109.73398 * 49.59498 * 10 9 8 12 12 C 1.46902 * 111.00192 * 53.38637 * 11 10 9 13 13 C 1.50700 * 109.46893 * 164.36430 * 12 11 10 14 14 C 1.37637 * 120.12476 * 103.11517 * 13 12 11 15 15 C 1.38607 * 120.25011 * 180.02562 * 14 13 12 16 16 C 1.38661 * 120.50238 * 359.97438 * 15 14 13 17 17 C 1.37596 * 120.24323 * 359.73340 * 16 15 14 18 18 C 1.40689 * 120.13222 * 283.12909 * 13 12 11 19 19 C 1.41400 * 120.24240 * 359.96302 * 18 13 12 20 20 H 1.07999 * 120.00255 * 29.04475 * 19 18 13 21 21 C 1.39949 * 119.99939 * 209.32301 * 19 18 13 22 22 N 1.30825 * 119.99868 * 10.02960 * 21 19 18 23 23 Si 1.86799 * 120.00110 * 190.03972 * 21 19 18 24 24 H 1.48502 * 109.47114 * 4.99395 * 23 21 19 25 25 H 1.48496 * 109.47694 * 124.99903 * 23 21 19 26 26 H 1.48499 * 109.46928 * 245.00192 * 23 21 19 27 27 C 1.47393 * 111.24819 * 289.25286 * 11 10 9 28 28 H 1.09003 * 109.46289 * 299.99707 * 1 2 3 29 29 H 1.08994 * 109.46938 * 59.99195 * 1 2 3 30 30 H 1.08994 * 109.47219 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46289 * 240.00293 * 2 1 3 32 32 H 1.08993 * 109.47109 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.46996 * 300.00329 * 3 2 1 34 34 H 1.08996 * 109.46579 * 60.00531 * 3 2 1 35 35 H 1.09001 * 109.72359 * 43.98554 * 9 8 4 36 36 H 1.09009 * 109.75224 * 283.34999 * 9 8 4 37 37 H 1.08997 * 109.41863 * 289.51545 * 10 9 8 38 38 H 1.08996 * 109.38269 * 169.65323 * 10 9 8 39 39 H 1.09006 * 109.46887 * 44.36856 * 12 11 10 40 40 H 1.08994 * 109.47206 * 284.36749 * 12 11 10 41 41 H 1.08005 * 119.87551 * 0.02562 * 14 13 12 42 42 H 1.08005 * 119.75307 * 179.97438 * 15 14 13 43 43 H 1.07998 * 119.87921 * 179.97438 * 16 15 14 44 44 H 1.07999 * 120.12882 * 180.28010 * 17 16 15 45 45 H 0.97004 * 119.99743 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.75091 * 169.70240 * 27 11 10 47 47 H 1.09001 * 109.74749 * 290.43937 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 7 1.7963 -0.3754 2.4737 6 7 2.3824 -1.2058 3.2679 7 6 3.0114 -2.0997 2.5709 8 7 2.8082 -1.8078 1.2589 9 6 3.3655 -2.5888 0.1542 10 6 4.4898 -3.4721 0.7117 11 7 4.0128 -4.1902 1.9020 12 6 2.7725 -4.9224 1.6133 13 6 2.5212 -5.9337 2.7020 14 6 1.5751 -5.6856 3.6703 15 6 1.3422 -6.6137 4.6731 16 6 2.0573 -7.8010 4.7131 17 6 3.0038 -8.0727 3.7521 18 6 3.2531 -7.1349 2.7328 19 6 4.2273 -7.4008 1.7430 20 1 4.7517 -6.5847 1.2684 21 6 4.5078 -8.7214 1.3743 22 7 3.7412 -9.6947 1.7944 23 14 5.9769 -9.0943 0.2824 24 1 6.7469 -7.8469 0.0456 25 1 6.8482 -10.0948 0.9495 26 1 5.5033 -9.6376 -1.0159 27 6 3.8319 -3.2736 3.0420 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6769 1.9562 0.8900 35 1 3.7671 -1.9176 -0.6049 36 1 2.5880 -3.2154 -0.2830 37 1 5.3412 -2.8474 0.9820 38 1 4.7949 -4.1918 -0.0479 39 1 2.8677 -5.4352 0.6561 40 1 1.9388 -4.2217 1.5688 41 1 1.0119 -4.7643 3.6486 42 1 0.5981 -6.4106 5.4291 43 1 1.8680 -8.5169 5.4993 44 1 3.5565 -9.0000 3.7824 45 1 3.9358 -10.6101 1.5391 46 1 3.3099 -3.7879 3.8489 47 1 4.8036 -2.9264 3.3933 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235522722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:11:05 Heat of formation + Delta-G solvation = 84.711582 kcal Electronic energy + Delta-G solvation = -28389.946490 eV Core-core repulsion = 24765.796891 eV Total energy + Delta-G solvation = -3624.149599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.42667 -40.19434 -38.73132 -36.83419 -35.41904 -35.10928 -32.54118 -31.88790 -31.26773 -30.04764 -28.11136 -27.92881 -26.88260 -25.59036 -24.53071 -23.87533 -22.76735 -21.80004 -20.99397 -20.20279 -18.93141 -18.10835 -17.66402 -17.24862 -16.64208 -16.30595 -16.22449 -15.92666 -15.79845 -15.48328 -15.15610 -14.87068 -14.55491 -14.31851 -14.18178 -13.88694 -13.41135 -13.39310 -13.16927 -13.03930 -12.88943 -12.77561 -12.68570 -12.61573 -12.46947 -12.36712 -12.24382 -12.19365 -12.10884 -11.99403 -11.35977 -11.33318 -11.11040 -11.08991 -11.00175 -10.06380 -9.49774 -9.20870 -9.12802 -8.47588 -6.21280 0.78770 1.00170 1.12422 1.44961 1.46927 1.58290 1.60604 1.77708 2.29056 2.80748 2.95909 3.10959 3.30749 3.45169 3.74503 3.82120 3.91284 4.03633 4.09057 4.21234 4.23497 4.28938 4.36180 4.40104 4.51331 4.62668 4.64821 4.71871 4.73503 4.76332 4.81472 4.85208 4.88836 4.96049 5.00192 5.08543 5.12237 5.28227 5.28509 5.37487 5.42842 5.56083 5.79250 5.86043 5.87588 6.02477 6.14301 6.23672 6.29375 6.48396 6.82978 7.10512 7.16608 7.68529 8.48404 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.015486 B = 0.003848 C = 0.003352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.637942 B = 7274.287202 C = 8352.074530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.004 4.004 3 C -0.134 4.134 4 C 0.190 3.810 5 N -0.339 5.339 6 N -0.330 5.330 7 C 0.149 3.851 8 N -0.467 5.467 9 C 0.063 3.937 10 C 0.039 3.961 11 N -0.520 5.520 12 C 0.140 3.860 13 C -0.194 4.194 14 C -0.092 4.092 15 C -0.244 4.244 16 C -0.114 4.114 17 C -0.187 4.187 18 C 0.107 3.893 19 C -0.464 4.464 20 H 0.098 0.902 21 C 0.029 3.971 22 N -0.840 5.840 23 Si 0.977 3.023 24 H -0.248 1.248 25 H -0.278 1.278 26 H -0.272 1.272 27 C 0.146 3.854 28 H 0.050 0.950 29 H 0.097 0.903 30 H 0.043 0.957 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.049 0.951 35 H 0.136 0.864 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.080 0.920 40 H 0.015 0.985 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.281 0.719 46 H 0.090 0.910 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.575 14.260 -10.868 17.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.192 4.192 4 C -0.079 4.079 5 N -0.179 5.179 6 N -0.169 5.169 7 C -0.123 4.123 8 N -0.157 5.157 9 C -0.060 4.060 10 C -0.089 4.089 11 N -0.241 5.241 12 C 0.013 3.987 13 C -0.196 4.196 14 C -0.111 4.111 15 C -0.263 4.263 16 C -0.133 4.133 17 C -0.206 4.206 18 C 0.104 3.896 19 C -0.494 4.494 20 H 0.116 0.884 21 C -0.184 4.184 22 N -0.467 5.467 23 Si 0.799 3.201 24 H -0.171 1.171 25 H -0.204 1.204 26 H -0.197 1.197 27 C 0.015 3.985 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.062 0.938 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.069 0.931 35 H 0.153 0.847 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.033 0.967 41 H 0.106 0.894 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.392 14.407 -9.605 17.371 hybrid contribution 0.008 -0.928 -0.890 1.286 sum 1.400 13.479 -10.495 17.141 Atomic orbital electron populations 1.21782 0.92404 1.01868 1.03543 1.19839 0.97061 0.96270 0.89290 1.21761 1.00908 0.93106 1.03467 1.25321 0.95553 0.88733 0.98287 1.74352 1.21914 1.22611 0.98980 1.73888 1.11738 1.03963 1.27345 1.25901 1.02990 1.01358 0.82003 1.46181 1.38503 1.22612 1.08450 1.23096 0.98994 0.95755 0.88198 1.22835 0.96084 0.96703 0.93265 1.62357 1.31353 1.24678 1.05677 1.20476 0.88190 0.92428 0.97582 1.19752 1.01123 0.98650 1.00114 1.20561 0.97931 0.97309 0.95319 1.20614 1.06139 0.96922 1.02648 1.20924 0.97252 0.96692 0.98394 1.21435 1.01721 1.01345 0.96120 1.17687 0.90640 0.90152 0.91084 1.19942 1.18344 0.92964 1.18151 0.88366 1.26786 0.98596 0.95848 0.97183 1.69908 1.35774 1.01607 1.39408 0.85222 0.77958 0.79276 0.77647 1.17078 1.20367 1.19723 1.20943 0.98074 0.84504 0.94942 0.93096 0.88428 0.93783 0.87121 0.92810 0.88602 0.93145 0.84653 0.88591 0.88305 0.85969 0.90198 0.96661 0.89366 0.87761 0.87968 0.88104 0.90842 0.89178 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.18 71.98 0.66 -1.66 16 2 C 0.00 -0.07 3.32 -11.54 -0.04 -0.10 16 3 C -0.13 -1.96 9.18 71.98 0.66 -1.30 16 4 C 0.19 5.11 6.59 138.20 0.91 6.03 16 5 N -0.34 -11.93 12.24 -50.59 -0.62 -12.55 16 6 N -0.33 -12.63 12.20 -50.27 -0.61 -13.24 16 7 C 0.15 4.87 7.02 138.11 0.97 5.84 16 8 N -0.47 -12.31 2.88 -504.42 -1.45 -13.76 16 9 C 0.06 1.15 5.87 86.57 0.51 1.66 16 10 C 0.04 0.83 5.90 86.45 0.51 1.34 16 11 N -0.52 -16.10 4.41 -902.74 -3.98 -20.08 16 12 C 0.14 5.03 3.18 85.56 0.27 5.31 16 13 C -0.19 -8.72 4.79 -19.41 -0.09 -8.81 16 14 C -0.09 -4.13 8.65 22.22 0.19 -3.94 16 15 C -0.24 -11.02 10.05 22.46 0.23 -10.80 16 16 C -0.11 -5.42 10.02 22.22 0.22 -5.20 16 17 C -0.19 -9.72 8.66 22.73 0.20 -9.52 16 18 C 0.11 5.38 5.55 -21.29 -0.12 5.26 16 19 C -0.46 -22.41 8.16 23.46 0.19 -22.22 16 20 H 0.10 4.40 6.80 -2.91 -0.02 4.38 16 21 C 0.03 1.35 5.27 85.26 0.45 1.80 16 22 N -0.84 -42.62 10.82 21.83 0.24 -42.39 16 23 Si 0.98 35.83 29.57 68.60 2.03 37.86 16 24 H -0.25 -8.49 7.11 99.48 0.71 -7.79 16 25 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 26 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 27 C 0.15 4.68 6.09 85.48 0.52 5.20 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.11 1.29 7.58 -2.39 -0.02 1.27 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.14 1.43 8.03 -2.39 -0.02 1.41 16 36 H 0.10 1.75 7.33 -2.38 -0.02 1.74 16 37 H 0.10 1.83 8.08 -2.39 -0.02 1.81 16 38 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 39 H 0.08 2.87 7.42 -2.38 -0.02 2.86 16 40 H 0.02 0.55 6.32 -2.39 -0.02 0.54 16 41 H 0.09 3.77 8.01 -2.91 -0.02 3.74 16 42 H 0.10 4.22 8.06 -2.91 -0.02 4.20 16 43 H 0.10 4.37 8.06 -2.91 -0.02 4.35 16 44 H 0.10 5.54 6.21 -2.91 -0.02 5.53 16 45 H 0.28 13.12 8.30 -92.71 -0.77 12.35 16 46 H 0.09 3.38 6.41 -2.39 -0.02 3.37 16 47 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 Total: -1.00 -66.01 372.66 2.81 -63.20 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.97 Total: 32.06 kcal Atomic # 6 Polarization: -37.35 SS G_CDS: 6.24 Total: -31.11 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -6.43 Total: -102.02 kcal Atomic # 14 Polarization: 35.83 SS G_CDS: 2.03 Total: 37.86 kcal Total: -66.01 2.81 -63.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235522722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.916 kcal (2) G-P(sol) polarization free energy of solvation -66.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds