Wall clock time and date at job start Tue Mar 31 2020 14:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47287 * 270.00944 * 3 2 1 5 5 H 1.48501 * 109.47080 * 30.00511 * 3 2 1 6 6 H 1.48497 * 109.47449 * 150.00406 * 3 2 1 7 7 C 1.37880 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99652 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46921 * 177.43962 * 9 7 2 11 11 C 1.46902 * 110.99598 * 209.30914 * 10 9 7 12 12 C 1.50702 * 109.46619 * 160.86619 * 11 10 9 13 13 C 1.38300 * 119.96564 * 95.42369 * 12 11 10 14 14 C 1.38260 * 120.13071 * 179.97438 * 13 12 11 15 15 C 1.38137 * 120.06836 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.93360 * 0.02562 * 15 14 13 17 17 N 1.40200 * 120.06959 * 180.02562 * 16 15 14 18 18 C 1.34720 * 126.83863 * 4.99237 * 17 16 15 19 19 N 1.30855 * 108.03410 * 180.02562 * 18 17 16 20 20 C 1.33267 * 109.84010 * 0.02562 * 19 18 17 21 21 N 1.30757 * 108.99827 * 359.71671 * 20 19 18 22 22 C 1.38100 * 119.96692 * 275.14684 * 12 11 10 23 23 C 1.46895 * 110.99557 * 85.35503 * 10 9 7 24 24 C 1.54963 * 110.92546 * 310.15295 * 23 10 9 25 25 C 1.54271 * 104.15669 * 156.29947 * 24 23 10 26 26 C 1.53873 * 106.64292 * 336.44562 * 25 24 23 27 27 C 1.54266 * 106.59683 * 359.97438 * 26 25 24 28 28 H 0.96998 * 120.00215 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46978 * 57.43862 * 9 7 2 30 30 H 1.09000 * 109.47220 * 297.44271 * 9 7 2 31 31 H 1.08993 * 109.46873 * 280.86186 * 11 10 9 32 32 H 1.08997 * 109.47398 * 40.86917 * 11 10 9 33 33 H 1.08003 * 119.93507 * 359.97438 * 13 12 11 34 34 H 1.08004 * 119.96680 * 180.02562 * 14 13 12 35 35 H 1.07998 * 120.03767 * 179.97438 * 15 14 13 36 36 H 1.08004 * 125.98530 * 359.97438 * 18 17 16 37 37 H 1.07992 * 125.49698 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.02922 * 0.02562 * 22 12 11 39 39 H 1.09004 * 110.66838 * 186.84619 * 23 10 9 40 40 H 1.08994 * 110.47848 * 37.65012 * 24 23 10 41 41 H 1.08999 * 110.53183 * 274.97553 * 24 23 10 42 42 H 1.09003 * 110.03108 * 217.13616 * 25 24 23 43 43 H 1.09001 * 110.03538 * 95.75858 * 25 24 23 44 44 H 1.08997 * 110.03005 * 119.26178 * 26 25 24 45 45 H 1.08998 * 110.02888 * 240.64183 * 26 25 24 46 46 H 1.09006 * 110.48347 * 142.28477 * 27 26 25 47 47 H 1.08994 * 110.48905 * 264.80176 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5777 0.0603 11 6 5.3045 -2.6453 0.7348 12 6 5.5575 -4.0569 1.1981 13 6 6.2996 -4.9194 0.4119 14 6 6.5342 -6.2150 0.8338 15 6 6.0274 -6.6518 2.0424 16 6 5.2814 -5.7887 2.8332 17 7 4.7661 -6.2289 4.0605 18 6 4.9861 -7.4211 4.6480 19 7 4.3282 -7.4430 5.7789 20 6 3.6799 -6.2909 5.9474 21 7 3.9215 -5.5130 4.9245 22 6 5.0531 -4.4860 2.4099 23 6 4.0715 -3.1712 -1.2816 24 6 2.7423 -2.9611 -2.0500 25 6 3.1466 -3.0537 -3.5358 26 6 4.6445 -2.7086 -3.6073 27 6 5.0990 -2.4174 -2.1622 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6411 0.8650 30 1 3.8745 -0.7202 -0.9132 31 1 6.0890 -2.3447 0.0404 32 1 5.3039 -1.9754 1.5946 33 1 6.6965 -4.5803 -0.5336 34 1 7.1144 -6.8862 0.2179 35 1 6.2107 -7.6640 2.3713 36 1 5.5977 -8.2194 4.2541 37 1 3.0589 -6.0389 6.7942 38 1 4.4772 -3.8107 3.0252 39 1 4.3186 -4.2311 -1.2211 40 1 2.3251 -1.9787 -1.8287 41 1 2.0279 -3.7453 -1.7995 42 1 2.5705 -2.3400 -4.1248 43 1 2.9783 -4.0649 -3.9063 44 1 5.2032 -3.5527 -4.0116 45 1 4.7953 -1.8279 -4.2316 46 1 6.1036 -2.8051 -1.9928 47 1 5.0650 -1.3469 -1.9599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236885631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:31 Heat of formation + Delta-G solvation = 131.014687 kcal Electronic energy + Delta-G solvation = -27765.439725 eV Core-core repulsion = 24143.297980 eV Total energy + Delta-G solvation = -3622.141746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.38610 -39.70261 -38.45404 -35.05286 -34.04975 -32.70056 -31.71094 -31.09217 -29.68240 -28.43680 -27.70459 -27.08900 -24.50951 -24.08889 -22.63803 -21.76753 -21.33192 -20.74466 -19.72221 -18.69339 -17.91633 -16.70753 -16.32081 -16.00094 -15.86460 -15.76532 -15.28932 -14.76166 -14.45350 -14.27609 -14.03088 -13.89205 -13.38295 -13.26167 -12.92126 -12.78012 -12.46253 -12.38690 -11.95212 -11.68284 -11.50881 -11.47483 -11.18376 -10.91622 -10.82350 -10.70871 -10.48217 -10.38616 -10.26167 -10.20726 -10.02593 -9.99372 -9.97631 -9.52045 -9.21976 -8.87503 -8.54218 -8.41261 -7.35023 -6.05696 -3.98878 0.65672 1.26742 1.94252 2.10501 2.78025 3.25319 3.33897 3.34741 3.66320 4.07502 4.30773 4.39862 4.64171 4.68254 4.77181 4.89395 5.07213 5.11504 5.17372 5.22200 5.24176 5.29571 5.43887 5.50922 5.69107 5.79573 5.85917 5.92892 5.99320 6.04469 6.09216 6.12248 6.18488 6.21951 6.25538 6.29892 6.30572 6.43798 6.51460 6.53802 6.55739 6.69749 6.83898 6.87866 6.98116 7.02991 7.52686 7.62668 7.86559 7.87288 8.03494 8.65939 9.07300 9.55140 11.06838 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.003885 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.485696 B = 7206.339607 C = 8813.509336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.068 3.932 3 Si 0.868 3.132 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.086 0.914 9 C 0.155 3.845 10 N -0.511 5.511 11 C 0.083 3.917 12 C -0.037 4.037 13 C -0.115 4.115 14 C -0.098 4.098 15 C -0.141 4.141 16 C 0.139 3.861 17 N -0.322 5.322 18 C 0.254 3.746 19 N -0.542 5.542 20 C 0.199 3.801 21 N -0.303 5.303 22 C -0.084 4.084 23 C 0.092 3.908 24 C -0.135 4.135 25 C -0.125 4.125 26 C -0.116 4.116 27 C -0.161 4.161 28 H 0.263 0.737 29 H 0.023 0.977 30 H -0.001 1.001 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.220 0.780 37 H 0.222 0.778 38 H 0.141 0.859 39 H 0.071 0.929 40 H 0.128 0.872 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.924 -12.511 1.054 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.134 4.134 3 Si 0.696 3.304 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.534 4.534 8 H 0.104 0.896 9 C 0.029 3.971 10 N -0.233 5.233 11 C -0.044 4.044 12 C -0.038 4.038 13 C -0.134 4.134 14 C -0.116 4.116 15 C -0.162 4.162 16 C 0.047 3.953 17 N -0.106 5.106 18 C -0.042 4.042 19 N -0.268 5.268 20 C -0.103 4.103 21 N -0.128 5.128 22 C -0.104 4.104 23 C -0.018 4.018 24 C -0.172 4.172 25 C -0.163 4.163 26 C -0.154 4.154 27 C -0.200 4.200 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.017 0.983 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.236 0.764 37 H 0.238 0.762 38 H 0.159 0.841 39 H 0.089 0.911 40 H 0.146 0.854 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.093 -12.178 1.525 18.688 hybrid contribution 1.041 1.183 -0.622 1.694 sum 15.134 -10.995 0.903 18.728 Atomic orbital electron populations 1.69883 1.06051 1.26743 1.50930 1.24891 0.94668 0.98567 0.95229 0.86972 0.80431 0.84567 0.78463 1.20341 1.21220 1.19284 1.21039 0.88637 0.94692 1.49062 0.89619 1.20376 0.97382 0.83906 0.95402 1.62100 1.21620 1.22257 1.17333 1.21171 0.92544 0.91676 0.99056 1.19875 0.94426 0.96807 0.92690 1.21211 0.98962 0.93546 0.99721 1.20862 0.99583 0.96055 0.95133 1.20675 1.00792 0.99035 0.95658 1.17564 0.99126 0.94976 0.83600 1.47759 1.34987 1.12130 1.15758 1.26109 0.98263 0.89832 0.89958 1.70603 1.14487 1.24273 1.17471 1.26179 0.98646 0.87671 0.97832 1.78287 1.11350 1.19882 1.03298 1.20867 0.98986 0.93617 0.96953 1.22608 0.95145 0.97005 0.87000 1.23011 0.96091 1.07001 0.91078 1.22159 0.95243 1.00174 0.98751 1.21986 0.96629 1.00216 0.96549 1.23048 0.98911 1.01850 0.96186 0.92684 0.95928 0.98316 0.93894 0.90175 0.85640 0.85111 0.85542 0.76379 0.76184 0.84111 0.91065 0.85429 0.92509 0.92309 0.93107 0.92781 0.92645 0.92895 0.91046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 3 Si 0.87 20.81 27.52 -169.99 -4.68 16.13 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.17 6.47 56.52 0.37 -5.80 16 7 C -0.50 -13.28 7.04 -34.44 -0.24 -13.53 16 8 H 0.09 2.55 7.41 -52.49 -0.39 2.16 16 9 C 0.16 3.50 3.31 -4.97 -0.02 3.48 16 10 N -0.51 -9.90 4.45 -227.08 -1.01 -10.91 16 11 C 0.08 1.33 5.00 -4.97 -0.02 1.31 16 12 C -0.04 -0.52 5.02 -104.65 -0.53 -1.04 16 13 C -0.12 -1.33 8.70 -39.55 -0.34 -1.68 16 14 C -0.10 -0.94 10.04 -39.61 -0.40 -1.34 16 15 C -0.14 -1.41 9.47 -39.41 -0.37 -1.79 16 16 C 0.14 1.84 6.69 -83.59 -0.56 1.28 16 17 N -0.32 -4.35 3.82 -11.80 -0.05 -4.40 16 18 C 0.25 2.77 11.98 -90.37 -1.08 1.69 16 19 N -0.54 -6.81 11.19 -15.74 -0.18 -6.98 16 20 C 0.20 2.51 13.03 -91.75 -1.20 1.31 16 21 N -0.30 -4.59 12.07 29.30 0.35 -4.24 16 22 C -0.08 -1.27 9.36 -39.40 -0.37 -1.63 16 23 C 0.09 1.59 2.84 -65.68 -0.19 1.40 16 24 C -0.13 -2.59 5.28 -25.03 -0.13 -2.72 16 25 C -0.13 -1.98 6.80 -25.61 -0.17 -2.15 16 26 C -0.12 -1.63 6.80 -25.61 -0.17 -1.80 16 27 C -0.16 -2.45 4.97 -25.07 -0.12 -2.57 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.02 0.52 6.30 -51.93 -0.33 0.20 16 30 H 0.00 -0.02 5.12 -51.93 -0.27 -0.28 16 31 H 0.04 0.62 6.30 -51.93 -0.33 0.29 16 32 H 0.08 1.31 7.51 -51.93 -0.39 0.92 16 33 H 0.13 1.29 7.96 -52.48 -0.42 0.87 16 34 H 0.13 0.88 8.06 -52.48 -0.42 0.45 16 35 H 0.13 0.85 6.83 -52.49 -0.36 0.49 16 36 H 0.22 1.32 7.13 -52.48 -0.37 0.95 16 37 H 0.22 1.92 8.06 -52.49 -0.42 1.50 16 38 H 0.14 2.40 7.75 -52.49 -0.41 2.00 16 39 H 0.07 1.18 7.01 -51.93 -0.36 0.82 16 40 H 0.13 2.95 4.45 -51.93 -0.23 2.72 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.05 0.69 7.50 -51.93 -0.39 0.30 16 47 H 0.07 1.21 5.99 -51.93 -0.31 0.90 16 LS Contribution 367.88 15.07 5.54 5.54 Total: -1.00 -31.89 367.88 -11.94 -43.83 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -6.68 Total: 4.99 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -6.02 Total: -18.00 kcal Atomic # 7 Polarization: -52.39 SS G_CDS: -0.10 Total: -52.49 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.68 Total: 16.13 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.89 -11.94 -43.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236885631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.843 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds