Wall clock time and date at job start Tue Mar 31 2020 14:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00111 * 2 1 4 4 H 1.48504 * 109.47287 * 270.00944 * 3 2 1 5 5 H 1.48501 * 109.47080 * 30.00511 * 3 2 1 6 6 H 1.48497 * 109.47449 * 150.00406 * 3 2 1 7 7 C 1.37880 * 119.99916 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99652 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46921 * 177.43962 * 9 7 2 11 11 C 1.46902 * 110.99598 * 209.30914 * 10 9 7 12 12 C 1.50702 * 109.46619 * 160.86619 * 11 10 9 13 13 C 1.38300 * 119.96564 * 95.42369 * 12 11 10 14 14 C 1.38260 * 120.13071 * 179.97438 * 13 12 11 15 15 C 1.38137 * 120.06836 * 0.02562 * 14 13 12 16 16 C 1.38809 * 119.93360 * 0.02562 * 15 14 13 17 17 N 1.40200 * 120.06959 * 180.02562 * 16 15 14 18 18 C 1.34720 * 126.83863 * 4.99237 * 17 16 15 19 19 N 1.30855 * 108.03410 * 180.02562 * 18 17 16 20 20 C 1.33267 * 109.84010 * 0.02562 * 19 18 17 21 21 N 1.30757 * 108.99827 * 359.71671 * 20 19 18 22 22 C 1.38100 * 119.96692 * 275.14684 * 12 11 10 23 23 C 1.46895 * 110.99557 * 85.35503 * 10 9 7 24 24 C 1.54963 * 110.92546 * 310.15295 * 23 10 9 25 25 C 1.54271 * 104.15669 * 156.29947 * 24 23 10 26 26 C 1.53873 * 106.64292 * 336.44562 * 25 24 23 27 27 C 1.54266 * 106.59683 * 359.97438 * 26 25 24 28 28 H 0.96998 * 120.00215 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46978 * 57.43862 * 9 7 2 30 30 H 1.09000 * 109.47220 * 297.44271 * 9 7 2 31 31 H 1.08993 * 109.46873 * 280.86186 * 11 10 9 32 32 H 1.08997 * 109.47398 * 40.86917 * 11 10 9 33 33 H 1.08003 * 119.93507 * 359.97438 * 13 12 11 34 34 H 1.08004 * 119.96680 * 180.02562 * 14 13 12 35 35 H 1.07998 * 120.03767 * 179.97438 * 15 14 13 36 36 H 1.08004 * 125.98530 * 359.97438 * 18 17 16 37 37 H 1.07992 * 125.49698 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.02922 * 0.02562 * 22 12 11 39 39 H 1.09004 * 110.66838 * 186.84619 * 23 10 9 40 40 H 1.08994 * 110.47848 * 37.65012 * 24 23 10 41 41 H 1.08999 * 110.53183 * 274.97553 * 24 23 10 42 42 H 1.09003 * 110.03108 * 217.13616 * 25 24 23 43 43 H 1.09001 * 110.03538 * 95.75858 * 25 24 23 44 44 H 1.08997 * 110.03005 * 119.26178 * 26 25 24 45 45 H 1.08998 * 110.02888 * 240.64183 * 26 25 24 46 46 H 1.09006 * 110.48347 * 142.28477 * 27 26 25 47 47 H 1.08994 * 110.48905 * 264.80176 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5777 0.0603 11 6 5.3045 -2.6453 0.7348 12 6 5.5575 -4.0569 1.1981 13 6 6.2996 -4.9194 0.4119 14 6 6.5342 -6.2150 0.8338 15 6 6.0274 -6.6518 2.0424 16 6 5.2814 -5.7887 2.8332 17 7 4.7661 -6.2289 4.0605 18 6 4.9861 -7.4211 4.6480 19 7 4.3282 -7.4430 5.7789 20 6 3.6799 -6.2909 5.9474 21 7 3.9215 -5.5130 4.9245 22 6 5.0531 -4.4860 2.4099 23 6 4.0715 -3.1712 -1.2816 24 6 2.7423 -2.9611 -2.0500 25 6 3.1466 -3.0537 -3.5358 26 6 4.6445 -2.7086 -3.6073 27 6 5.0990 -2.4174 -2.1622 28 1 -0.4850 0.8400 0.0004 29 1 3.8752 -0.6411 0.8650 30 1 3.8745 -0.7202 -0.9132 31 1 6.0890 -2.3447 0.0404 32 1 5.3039 -1.9754 1.5946 33 1 6.6965 -4.5803 -0.5336 34 1 7.1144 -6.8862 0.2179 35 1 6.2107 -7.6640 2.3713 36 1 5.5977 -8.2194 4.2541 37 1 3.0589 -6.0389 6.7942 38 1 4.4772 -3.8107 3.0252 39 1 4.3186 -4.2311 -1.2211 40 1 2.3251 -1.9787 -1.8287 41 1 2.0279 -3.7453 -1.7995 42 1 2.5705 -2.3400 -4.1248 43 1 2.9783 -4.0649 -3.9063 44 1 5.2032 -3.5527 -4.0116 45 1 4.7953 -1.8279 -4.2316 46 1 6.1036 -2.8051 -1.9928 47 1 5.0650 -1.3469 -1.9599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236885631.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:30 Heat of formation + Delta-G solvation = 113.486500 kcal Electronic energy + Delta-G solvation = -27766.199805 eV Core-core repulsion = 24143.297980 eV Total energy + Delta-G solvation = -3622.901825 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.31171 -40.82215 -39.67400 -36.30431 -35.25824 -34.51734 -32.81453 -32.15491 -30.76620 -29.88949 -29.23952 -28.33402 -25.86854 -25.03940 -23.67688 -23.46870 -22.28257 -21.72753 -21.00422 -20.12407 -19.02914 -18.63298 -17.36354 -17.18265 -16.87005 -16.73678 -16.65992 -16.10260 -15.71089 -15.69331 -15.11720 -14.83388 -14.77008 -14.55279 -14.29845 -14.11261 -13.85658 -13.46697 -13.26777 -13.06401 -12.91884 -12.74321 -12.57710 -12.39265 -12.04194 -11.93392 -11.91286 -11.79106 -11.71118 -11.60352 -11.42197 -11.20195 -11.16570 -11.03215 -10.99103 -10.66001 -9.83661 -9.33510 -8.83641 -8.23321 -6.19645 -0.23373 0.35103 1.03643 1.22941 1.31876 1.34602 1.43520 1.86515 2.35057 2.71268 3.07425 3.32735 3.35623 3.41073 3.80458 3.85143 3.91742 3.95006 4.02184 4.14504 4.18651 4.25869 4.37079 4.52942 4.58124 4.62182 4.67977 4.71631 4.73496 4.83757 4.89630 4.92013 4.99509 5.02318 5.05728 5.11449 5.17644 5.29124 5.31614 5.39318 5.41835 5.49077 5.55978 5.61560 5.63501 5.77299 5.87526 6.05440 6.10921 6.53513 6.71021 6.82876 6.94736 7.37350 8.93288 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.003885 C = 0.003176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.485696 B = 7206.339607 C = 8813.509336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.006 3.994 3 Si 0.936 3.064 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.251 1.251 7 C -0.486 4.486 8 H 0.038 0.962 9 C 0.169 3.831 10 N -0.535 5.535 11 C 0.088 3.912 12 C -0.054 4.054 13 C -0.114 4.114 14 C -0.083 4.083 15 C -0.127 4.127 16 C 0.123 3.877 17 N -0.335 5.335 18 C 0.265 3.735 19 N -0.562 5.562 20 C 0.200 3.800 21 N -0.360 5.360 22 C -0.115 4.115 23 C 0.095 3.905 24 C -0.140 4.140 25 C -0.121 4.121 26 C -0.109 4.109 27 C -0.154 4.154 28 H 0.263 0.737 29 H 0.016 0.984 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.147 0.853 34 H 0.176 0.824 35 H 0.170 0.830 36 H 0.270 0.730 37 H 0.246 0.754 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.049 0.951 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.086 0.914 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.291 -14.911 -0.625 24.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.190 4.190 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.213 1.213 6 H -0.175 1.175 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.042 3.958 10 N -0.257 5.257 11 C -0.040 4.040 12 C -0.055 4.055 13 C -0.133 4.133 14 C -0.102 4.102 15 C -0.147 4.147 16 C 0.031 3.969 17 N -0.119 5.119 18 C -0.029 4.029 19 N -0.289 5.289 20 C -0.102 4.102 21 N -0.185 5.185 22 C -0.135 4.135 23 C -0.013 4.013 24 C -0.178 4.178 25 C -0.159 4.159 26 C -0.147 4.147 27 C -0.193 4.193 28 H 0.072 0.928 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.165 0.835 34 H 0.193 0.807 35 H 0.187 0.813 36 H 0.285 0.715 37 H 0.262 0.738 38 H 0.118 0.882 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.089 0.911 44 H 0.104 0.896 45 H 0.081 0.919 46 H 0.105 0.895 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 18.492 -14.592 -0.159 23.556 hybrid contribution -0.357 1.727 -0.055 1.765 sum 18.134 -12.865 -0.213 22.235 Atomic orbital electron populations 1.70052 1.08045 1.27658 1.53445 1.25741 0.95427 1.02605 0.95263 0.85880 0.79506 0.79488 0.79112 1.19056 1.21328 1.17498 1.21200 0.91061 0.92794 1.47398 0.94403 1.20058 0.94342 0.86264 0.95149 1.61914 1.24510 1.20092 1.19199 1.21130 0.91151 0.93232 0.98438 1.19708 0.96390 0.96333 0.93098 1.21465 0.97901 0.93984 0.99906 1.21380 0.98315 0.95582 0.94890 1.21200 0.98421 1.00168 0.94923 1.17843 1.00064 0.94827 0.84128 1.47830 1.35271 1.12831 1.15977 1.27115 0.97136 0.89640 0.88965 1.70645 1.15365 1.24277 1.18580 1.26752 0.98188 0.87440 0.97818 1.78242 1.13460 1.22053 1.04786 1.20673 1.00552 0.94629 0.97695 1.22603 0.94605 0.97990 0.86097 1.22847 0.96940 1.03336 0.94641 1.22118 0.96949 1.01247 0.95570 1.21981 0.94920 1.01867 0.95910 1.22980 0.99792 1.00295 0.96257 0.92778 0.96585 0.97544 0.91642 0.91982 0.83504 0.80687 0.81297 0.71473 0.73772 0.88183 0.89519 0.89929 0.94968 0.93161 0.91130 0.89561 0.91907 0.89512 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 2 C 0.01 0.36 5.47 84.66 0.46 0.82 16 3 Si 0.94 44.32 27.52 68.60 1.89 46.21 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 6 H -0.25 -11.10 6.47 99.48 0.64 -10.45 16 7 C -0.49 -27.81 7.04 25.60 0.18 -27.63 16 8 H 0.04 2.47 7.41 -2.91 -0.02 2.44 16 9 C 0.17 7.89 3.31 85.56 0.28 8.17 16 10 N -0.53 -21.29 4.45 -872.34 -3.88 -25.17 16 11 C 0.09 2.80 5.00 85.56 0.43 3.23 16 12 C -0.05 -1.50 5.02 -19.88 -0.10 -1.60 16 13 C -0.11 -2.20 8.70 22.29 0.19 -2.00 16 14 C -0.08 -1.16 10.04 22.25 0.22 -0.93 16 15 C -0.13 -2.00 9.47 22.38 0.21 -1.78 16 16 C 0.12 3.13 6.69 38.09 0.25 3.39 16 17 N -0.34 -8.90 3.82 -191.26 -0.73 -9.63 16 18 C 0.27 5.20 11.98 180.26 2.16 7.36 16 19 N -0.56 -13.48 11.19 -203.72 -2.28 -15.76 16 20 C 0.20 5.12 13.03 180.74 2.35 7.47 16 21 N -0.36 -11.44 12.07 -61.21 -0.74 -12.18 16 22 C -0.11 -3.61 9.36 22.39 0.21 -3.40 16 23 C 0.10 3.25 2.84 46.23 0.13 3.38 16 24 C -0.14 -5.59 5.28 31.70 0.17 -5.42 16 25 C -0.12 -3.67 6.80 31.32 0.21 -3.46 16 26 C -0.11 -2.68 6.80 31.32 0.21 -2.47 16 27 C -0.15 -4.25 4.97 31.67 0.16 -4.09 16 28 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 29 H 0.02 0.77 6.30 -2.39 -0.02 0.75 16 30 H 0.01 0.32 5.12 -2.39 -0.01 0.30 16 31 H 0.07 1.75 6.30 -2.39 -0.02 1.74 16 32 H 0.06 2.14 7.51 -2.39 -0.02 2.12 16 33 H 0.15 2.19 7.96 -2.91 -0.02 2.17 16 34 H 0.18 0.99 8.06 -2.91 -0.02 0.96 16 35 H 0.17 1.17 6.83 -2.91 -0.02 1.15 16 36 H 0.27 1.92 7.13 -2.91 -0.02 1.90 16 37 H 0.25 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.10 3.86 7.75 -2.91 -0.02 3.83 16 39 H 0.09 2.70 7.01 -2.38 -0.02 2.68 16 40 H 0.08 4.08 4.45 -2.39 -0.01 4.07 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.09 1.83 7.50 -2.38 -0.02 1.81 16 47 H 0.05 1.64 5.99 -2.39 -0.01 1.63 16 Total: -1.00 -78.56 367.88 3.22 -75.34 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.92 Total: 20.03 kcal Atomic # 6 Polarization: -26.72 SS G_CDS: 7.74 Total: -18.98 kcal Atomic # 7 Polarization: -115.28 SS G_CDS: -7.33 Total: -122.61 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.89 Total: 46.21 kcal Total: -78.56 3.22 -75.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236885631.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.829 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds