Wall clock time and date at job start Tue Mar 31 2020 14:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35841 * 117.00115 * 2 1 4 4 C 1.36604 * 120.18192 * 359.97438 * 3 2 1 5 5 C 1.39193 * 121.00275 * 179.97438 * 4 3 2 6 6 C 1.36213 * 120.94127 * 0.02562 * 5 4 3 7 7 C 1.40413 * 119.72682 * 0.02562 * 6 5 4 8 8 C 1.40784 * 121.36293 * 179.97438 * 7 6 5 9 9 C 1.50705 * 120.92593 * 0.02562 * 8 7 6 10 10 N 1.46899 * 109.46990 * 80.00076 * 9 8 7 11 11 C 1.46847 * 110.99862 * 170.00184 * 10 9 8 12 12 C 1.53044 * 109.51335 * 174.15436 * 11 10 9 13 13 C 1.53119 * 109.27589 * 59.18419 * 12 11 10 14 14 C 1.50703 * 109.51728 * 182.37636 * 13 12 11 15 15 H 1.08001 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99699 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47065 * 120.00194 * 18 16 14 21 21 H 1.48503 * 109.46938 * 240.00347 * 18 16 14 22 22 C 1.53120 * 109.16202 * 302.34077 * 13 12 11 23 23 C 1.46847 * 110.99299 * 45.79343 * 10 9 8 24 24 C 1.36563 * 118.14712 * 180.27341 * 8 7 6 25 25 C 1.39346 * 119.92755 * 359.50768 * 24 8 7 26 26 N 1.31081 * 121.73547 * 0.50494 * 25 24 8 27 27 C 1.33594 * 121.33229 * 359.75279 * 26 25 24 28 28 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47359 * 300.00429 * 1 2 3 30 30 H 1.09004 * 109.46986 * 60.00215 * 1 2 3 31 31 H 1.07997 * 119.49733 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.53047 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.13391 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46547 * 320.00065 * 9 8 7 35 35 H 1.08997 * 109.46818 * 199.99967 * 9 8 7 36 36 H 1.09002 * 109.46448 * 54.14158 * 11 10 9 37 37 H 1.08994 * 109.45958 * 294.16523 * 11 10 9 38 38 H 1.09000 * 109.49745 * 179.12223 * 12 11 10 39 39 H 1.08999 * 109.49729 * 299.20033 * 12 11 10 40 40 H 1.08993 * 109.52284 * 62.25342 * 13 12 11 41 41 H 0.97004 * 119.99580 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.50328 * 177.59853 * 22 13 12 43 43 H 1.09004 * 109.50202 * 297.68149 * 22 13 12 44 44 H 1.09005 * 109.46836 * 65.83946 * 23 10 9 45 45 H 1.08995 * 109.45748 * 305.85482 * 23 10 9 46 46 H 1.08004 * 120.03900 * 179.72291 * 24 8 7 47 47 H 1.07999 * 119.12741 * 180.28024 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3054 2.3584 -0.0005 5 6 1.9195 3.6075 0.0000 6 6 3.2769 3.7206 0.0005 7 6 4.0720 2.5632 0.0000 8 6 5.4777 2.6400 0.0000 9 6 6.1806 3.9730 0.0011 10 7 6.1963 4.5171 1.3655 11 6 7.0721 5.6926 1.4533 12 6 6.9514 6.3173 2.8452 13 6 7.3490 5.2814 3.9003 14 6 7.1764 5.8721 5.2760 15 1 6.8184 6.8849 5.3878 16 6 7.4744 5.1191 6.3919 17 7 7.9097 3.8856 6.2558 18 14 7.2610 5.8515 8.0971 19 1 6.7634 7.2456 7.9783 20 1 6.2833 5.0401 8.8655 21 1 8.5676 5.8514 8.8028 22 6 6.4538 4.0476 3.7558 23 6 6.5888 3.4887 2.3375 24 6 6.1866 1.4727 -0.0063 25 6 5.5154 0.2516 -0.0020 26 7 4.2063 0.1845 -0.0019 27 6 3.4540 1.2885 -0.0009 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2272 2.2958 -0.0014 32 1 1.3111 4.4998 0.0000 33 1 3.7397 4.6964 0.0005 34 1 5.6536 4.6621 -0.6588 35 1 7.2043 3.8443 -0.3505 36 1 6.7761 6.4231 0.7004 37 1 8.1046 5.3899 1.2793 38 1 7.6132 7.1805 2.9152 39 1 5.9220 6.6332 3.0142 40 1 8.3905 4.9948 3.7551 41 1 8.1197 3.3560 7.0409 42 1 6.7600 3.2894 4.4764 43 1 5.4164 4.3271 3.9401 44 1 7.6238 3.1966 2.1594 45 1 5.9417 2.6187 2.2269 46 1 7.2664 1.4960 -0.0110 47 1 6.0888 -0.6635 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237116067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:06 Heat of formation + Delta-G solvation = 19.025067 kcal Electronic energy + Delta-G solvation = -27875.751181 eV Core-core repulsion = 24216.460450 eV Total energy + Delta-G solvation = -3659.290731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16765 -39.23724 -38.09255 -36.46011 -34.75900 -32.88516 -31.01350 -30.61738 -29.85520 -29.45810 -27.48361 -26.99190 -24.78206 -23.72097 -23.19088 -22.11050 -21.65086 -20.49628 -18.65443 -18.35899 -17.78862 -16.80524 -16.39241 -16.12493 -15.94555 -15.40285 -15.13723 -14.56051 -14.46448 -14.29778 -13.94774 -13.73829 -13.51537 -13.39825 -12.94813 -12.71629 -12.42219 -12.21353 -11.99599 -11.95913 -11.84399 -11.63385 -11.47948 -11.21609 -11.06022 -10.95864 -10.73868 -10.43986 -10.22586 -9.99244 -9.81981 -9.48194 -9.39845 -8.96130 -8.81967 -8.68046 -8.28637 -7.89092 -7.66888 -5.96133 -4.01312 0.49105 0.81287 2.02460 2.96410 3.06532 3.31172 3.39400 3.43142 4.06528 4.22203 4.45015 4.47369 4.61226 4.69983 4.82570 4.90780 4.92603 4.96633 5.11722 5.19011 5.30992 5.33997 5.34344 5.44855 5.53411 5.64462 5.68334 5.84929 5.89041 5.98535 6.02030 6.09596 6.18602 6.26305 6.30130 6.47293 6.59001 6.61046 6.62343 6.74266 6.83995 7.05961 7.13876 7.21037 7.42318 7.57923 7.63235 7.82452 7.97472 8.05304 8.16648 8.49370 9.02507 9.63168 11.10055 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.003265 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.786132 B = 8572.534837 C = 9041.814180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.296 6.296 3 C 0.151 3.849 4 C -0.210 4.210 5 C -0.085 4.085 6 C -0.113 4.113 7 C -0.052 4.052 8 C -0.015 4.015 9 C 0.088 3.912 10 N -0.526 5.526 11 C 0.060 3.940 12 C -0.106 4.106 13 C 0.048 3.952 14 C -0.510 4.510 15 H 0.054 0.946 16 C 0.060 3.940 17 N -0.891 5.891 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.103 4.103 23 C 0.056 3.944 24 C -0.164 4.164 25 C 0.122 3.878 26 N -0.458 5.458 27 C 0.109 3.891 28 H 0.100 0.900 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.131 0.869 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.059 0.941 37 H 0.026 0.974 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.258 0.742 42 H 0.092 0.908 43 H 0.042 0.958 44 H 0.023 0.977 45 H 0.056 0.944 46 H 0.136 0.864 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 -4.602 -16.686 20.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.208 6.208 3 C 0.104 3.896 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.132 4.132 7 C -0.055 4.055 8 C -0.024 4.024 9 C -0.039 4.039 10 N -0.251 5.251 11 C -0.067 4.067 12 C -0.143 4.143 13 C 0.030 3.970 14 C -0.548 4.548 15 H 0.073 0.927 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.141 4.141 23 C -0.071 4.071 24 C -0.185 4.185 25 C -0.050 4.050 26 N -0.166 5.166 27 C -0.013 4.013 28 H 0.118 0.882 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.145 0.855 33 H 0.156 0.844 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.038 0.962 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.041 0.959 45 H 0.074 0.926 46 H 0.153 0.847 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.089 -5.571 -16.456 20.611 hybrid contribution 0.926 0.913 0.888 1.575 sum -10.163 -4.658 -15.568 19.167 Atomic orbital electron populations 1.23107 0.78744 1.03982 1.01302 1.86181 1.20749 1.26187 1.87716 1.18421 0.89881 0.84856 0.96420 1.20843 1.00147 0.92125 1.09962 1.20602 0.94806 0.96714 0.98170 1.20982 0.93342 0.98030 1.00839 1.18395 0.93482 0.93334 1.00267 1.20014 0.92213 0.95848 0.94313 1.21115 0.98006 0.91681 0.93144 1.62213 1.53198 1.07673 1.02032 1.22153 0.93426 0.91681 0.99457 1.21675 1.00974 0.98818 0.92875 1.18682 0.94773 0.91021 0.92554 1.21238 1.43621 0.99177 0.90762 0.92724 1.24970 0.95157 0.94901 0.99005 1.69885 1.45454 1.08446 1.29260 0.86590 0.77653 0.79330 0.84746 1.19828 1.21096 1.21152 1.21648 0.99649 1.01068 0.91721 1.22342 0.96999 0.93161 0.94592 1.21872 1.01617 0.93008 1.01981 1.22864 0.90052 0.97560 0.94559 1.67957 1.06810 1.30378 1.11447 1.18104 0.91014 0.89041 1.03174 0.88183 0.92542 0.92700 0.85163 0.85483 0.84356 0.89785 0.93793 0.92277 0.95594 0.93090 0.92432 0.96194 0.93173 0.89028 0.93932 0.95908 0.92571 0.84654 0.82405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.99 10.29 -19.24 -0.20 -4.19 16 3 C 0.15 2.16 6.71 -39.11 -0.26 1.89 16 4 C -0.21 -2.49 8.98 -39.82 -0.36 -2.84 16 5 C -0.08 -1.00 9.95 -39.96 -0.40 -1.39 16 6 C -0.11 -1.52 9.32 -39.49 -0.37 -1.88 16 7 C -0.05 -0.78 5.74 -106.81 -0.61 -1.40 16 8 C -0.02 -0.22 3.71 -104.26 -0.39 -0.61 16 9 C 0.09 1.20 4.74 -4.97 -0.02 1.18 16 10 N -0.53 -8.90 4.80 -236.11 -1.13 -10.03 16 11 C 0.06 1.02 5.43 -3.83 -0.02 1.00 16 12 C -0.11 -2.16 5.32 -26.65 -0.14 -2.30 16 13 C 0.05 1.19 2.16 -91.65 -0.20 0.99 16 14 C -0.51 -13.98 8.57 -34.44 -0.29 -14.28 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.68 5.31 -17.82 -0.09 1.58 16 17 N -0.89 -25.51 11.37 55.43 0.63 -24.88 16 18 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 C -0.10 -2.44 5.12 -26.65 -0.14 -2.58 16 23 C 0.06 1.10 4.83 -3.83 -0.02 1.08 16 24 C -0.16 -2.15 8.69 -39.77 -0.35 -2.49 16 25 C 0.12 1.63 11.15 -17.46 -0.19 1.43 16 26 N -0.46 -7.29 10.13 -10.88 -0.11 -7.40 16 27 C 0.11 1.73 6.62 -84.73 -0.56 1.17 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.42 7.65 -51.93 -0.40 0.02 16 30 H 0.05 0.37 7.65 -51.93 -0.40 -0.03 16 31 H 0.13 1.16 6.20 -52.49 -0.33 0.83 16 32 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 33 H 0.14 1.75 6.68 -52.49 -0.35 1.40 16 34 H 0.08 1.01 7.07 -51.93 -0.37 0.64 16 35 H 0.04 0.56 7.97 -51.93 -0.41 0.15 16 36 H 0.06 0.86 8.12 -51.93 -0.42 0.43 16 37 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 42 H 0.09 2.45 6.17 -51.93 -0.32 2.13 16 43 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.10 6.03 -51.93 -0.31 0.79 16 46 H 0.14 1.50 8.05 -52.48 -0.42 1.08 16 47 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 370.36 15.07 5.58 5.58 Total: -1.00 -31.50 370.36 -10.75 -42.26 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.08 Total: 0.53 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: -3.42 Total: -18.25 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -0.61 Total: -42.32 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.20 Total: -4.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.50 -10.75 -42.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237116067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.282 kcal (2) G-P(sol) polarization free energy of solvation -31.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds