Wall clock time and date at job start Tue Mar 31 2020 14:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35841 * 117.00115 * 2 1 4 4 C 1.36604 * 120.18192 * 359.97438 * 3 2 1 5 5 C 1.39193 * 121.00275 * 179.97438 * 4 3 2 6 6 C 1.36213 * 120.94127 * 0.02562 * 5 4 3 7 7 C 1.40413 * 119.72682 * 0.02562 * 6 5 4 8 8 C 1.40784 * 121.36293 * 179.97438 * 7 6 5 9 9 C 1.50705 * 120.92593 * 0.02562 * 8 7 6 10 10 N 1.46899 * 109.46990 * 80.00076 * 9 8 7 11 11 C 1.46847 * 110.99862 * 170.00184 * 10 9 8 12 12 C 1.53044 * 109.51335 * 174.15436 * 11 10 9 13 13 C 1.53119 * 109.27589 * 59.18419 * 12 11 10 14 14 C 1.50703 * 109.51728 * 182.37636 * 13 12 11 15 15 H 1.08001 * 120.00215 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99699 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99840 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47204 * 359.97438 * 18 16 14 20 20 H 1.48490 * 109.47065 * 120.00194 * 18 16 14 21 21 H 1.48503 * 109.46938 * 240.00347 * 18 16 14 22 22 C 1.53120 * 109.16202 * 302.34077 * 13 12 11 23 23 C 1.46847 * 110.99299 * 45.79343 * 10 9 8 24 24 C 1.36563 * 118.14712 * 180.27341 * 8 7 6 25 25 C 1.39346 * 119.92755 * 359.50768 * 24 8 7 26 26 N 1.31081 * 121.73547 * 0.50494 * 25 24 8 27 27 C 1.33594 * 121.33229 * 359.75279 * 26 25 24 28 28 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47359 * 300.00429 * 1 2 3 30 30 H 1.09004 * 109.46986 * 60.00215 * 1 2 3 31 31 H 1.07997 * 119.49733 * 359.97438 * 4 3 2 32 32 H 1.07999 * 119.53047 * 180.02562 * 5 4 3 33 33 H 1.07999 * 120.13391 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.46547 * 320.00065 * 9 8 7 35 35 H 1.08997 * 109.46818 * 199.99967 * 9 8 7 36 36 H 1.09002 * 109.46448 * 54.14158 * 11 10 9 37 37 H 1.08994 * 109.45958 * 294.16523 * 11 10 9 38 38 H 1.09000 * 109.49745 * 179.12223 * 12 11 10 39 39 H 1.08999 * 109.49729 * 299.20033 * 12 11 10 40 40 H 1.08993 * 109.52284 * 62.25342 * 13 12 11 41 41 H 0.97004 * 119.99580 * 179.97438 * 17 16 14 42 42 H 1.08996 * 109.50328 * 177.59853 * 22 13 12 43 43 H 1.09004 * 109.50202 * 297.68149 * 22 13 12 44 44 H 1.09005 * 109.46836 * 65.83946 * 23 10 9 45 45 H 1.08995 * 109.45748 * 305.85482 * 23 10 9 46 46 H 1.08004 * 120.03900 * 179.72291 * 24 8 7 47 47 H 1.07999 * 119.12741 * 180.28024 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2103 0.0000 4 6 1.3054 2.3584 -0.0005 5 6 1.9195 3.6075 0.0000 6 6 3.2769 3.7206 0.0005 7 6 4.0720 2.5632 0.0000 8 6 5.4777 2.6400 0.0000 9 6 6.1806 3.9730 0.0011 10 7 6.1963 4.5171 1.3655 11 6 7.0721 5.6926 1.4533 12 6 6.9514 6.3173 2.8452 13 6 7.3490 5.2814 3.9003 14 6 7.1764 5.8721 5.2760 15 1 6.8184 6.8849 5.3878 16 6 7.4744 5.1191 6.3919 17 7 7.9097 3.8856 6.2558 18 14 7.2610 5.8515 8.0971 19 1 6.7634 7.2456 7.9783 20 1 6.2833 5.0401 8.8655 21 1 8.5676 5.8514 8.8028 22 6 6.4538 4.0476 3.7558 23 6 6.5888 3.4887 2.3375 24 6 6.1866 1.4727 -0.0063 25 6 5.5154 0.2516 -0.0020 26 7 4.2063 0.1845 -0.0019 27 6 3.4540 1.2885 -0.0009 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2272 2.2958 -0.0014 32 1 1.3111 4.4998 0.0000 33 1 3.7397 4.6964 0.0005 34 1 5.6536 4.6621 -0.6588 35 1 7.2043 3.8443 -0.3505 36 1 6.7761 6.4231 0.7004 37 1 8.1046 5.3899 1.2793 38 1 7.6132 7.1805 2.9152 39 1 5.9220 6.6332 3.0142 40 1 8.3905 4.9948 3.7551 41 1 8.1197 3.3560 7.0409 42 1 6.7600 3.2894 4.4764 43 1 5.4164 4.3271 3.9401 44 1 7.6238 3.1966 2.1594 45 1 5.9417 2.6187 2.2269 46 1 7.2664 1.4960 -0.0110 47 1 6.0888 -0.6635 -0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237116067.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:05 Heat of formation + Delta-G solvation = 0.015025 kcal Electronic energy + Delta-G solvation = -27876.575519 eV Core-core repulsion = 24216.460450 eV Total energy + Delta-G solvation = -3660.115068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16140 -40.28270 -39.45482 -37.40424 -36.27915 -34.48179 -32.61675 -31.64039 -31.45187 -30.46320 -28.52543 -28.19901 -26.41179 -24.77262 -24.27918 -23.69136 -23.14775 -21.63275 -20.34275 -19.28883 -18.80096 -18.43301 -17.79477 -17.13065 -16.97008 -16.73472 -16.34096 -16.10162 -15.58250 -15.47889 -15.09602 -15.02106 -14.78358 -14.53504 -14.29435 -14.21243 -14.15006 -13.40439 -13.18439 -13.10638 -12.88193 -12.83342 -12.80257 -12.72438 -12.51180 -12.25805 -12.09364 -11.99175 -11.92919 -11.85509 -11.35327 -10.92908 -10.75178 -10.63125 -10.46575 -10.37667 -9.79312 -9.19901 -8.69560 -8.07850 -6.20747 -0.51104 -0.17885 1.00251 1.38910 1.41133 1.52127 2.00495 2.25139 2.43548 2.95800 3.19100 3.23548 3.30825 3.57887 3.74070 3.91618 3.96824 4.09402 4.22031 4.26849 4.31546 4.37020 4.39233 4.40385 4.41154 4.49383 4.54948 4.66863 4.70759 4.73505 4.80058 4.88649 4.90946 5.00640 5.05500 5.07004 5.12722 5.24999 5.32009 5.35258 5.52805 5.58237 5.61674 5.63759 5.80317 6.00478 6.02102 6.24895 6.31709 6.34516 6.41603 6.91786 6.95856 7.47123 8.96633 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.003265 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.786132 B = 8572.534837 C = 9041.814180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.323 6.323 3 C 0.130 3.870 4 C -0.204 4.204 5 C -0.081 4.081 6 C -0.128 4.128 7 C -0.067 4.067 8 C -0.029 4.029 9 C 0.093 3.907 10 N -0.530 5.530 11 C 0.067 3.933 12 C -0.099 4.099 13 C 0.045 3.955 14 C -0.530 4.530 15 H 0.051 0.949 16 C 0.011 3.989 17 N -0.918 5.918 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.281 1.281 22 C -0.093 4.093 23 C 0.076 3.924 24 C -0.165 4.165 25 C 0.114 3.886 26 N -0.487 5.487 27 C 0.077 3.923 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.108 0.892 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.027 0.973 38 H 0.056 0.944 39 H 0.051 0.949 40 H -0.010 1.010 41 H 0.258 0.742 42 H 0.055 0.945 43 H 0.023 0.977 44 H 0.019 0.981 45 H 0.054 0.946 46 H 0.155 0.845 47 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.296 -3.388 -17.945 21.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.083 3.917 4 C -0.224 4.224 5 C -0.099 4.099 6 C -0.147 4.147 7 C -0.070 4.070 8 C -0.038 4.038 9 C -0.033 4.033 10 N -0.255 5.255 11 C -0.061 4.061 12 C -0.137 4.137 13 C 0.027 3.973 14 C -0.569 4.569 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.558 5.558 18 Si 0.777 3.223 19 H -0.190 1.190 20 H -0.209 1.209 21 H -0.206 1.206 22 C -0.131 4.131 23 C -0.052 4.052 24 C -0.186 4.186 25 C -0.058 4.058 26 N -0.195 5.195 27 C -0.045 4.045 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.164 0.836 34 H 0.126 0.874 35 H 0.078 0.922 36 H 0.115 0.885 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.008 0.992 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.042 0.958 44 H 0.037 0.963 45 H 0.073 0.927 46 H 0.173 0.827 47 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -12.174 -4.345 -17.732 21.944 hybrid contribution 1.192 0.497 1.271 1.812 sum -10.982 -3.848 -16.461 20.159 Atomic orbital electron populations 1.23417 0.76361 1.05641 1.02510 1.86135 1.23320 1.26322 1.87818 1.18676 0.89833 0.85905 0.97303 1.21206 1.01589 0.91385 1.08234 1.21008 0.94640 0.97828 0.96374 1.21162 0.94129 0.97784 1.01646 1.18617 0.94113 0.93625 1.00618 1.20166 0.92244 0.96402 0.94955 1.21173 0.99207 0.91858 0.91092 1.62097 1.52993 1.06997 1.03422 1.22099 0.93745 0.92247 0.97985 1.21535 1.00449 0.97886 0.93826 1.18649 0.93115 0.92488 0.93055 1.21639 1.43504 0.99193 0.92519 0.93033 1.25743 0.95007 0.95288 1.02719 1.70029 1.46148 1.09502 1.30104 0.85614 0.77632 0.78807 0.80267 1.19018 1.20936 1.20648 1.21388 0.97930 0.99885 0.93917 1.21954 0.96752 0.93592 0.92881 1.22126 1.02583 0.92713 1.01157 1.23354 0.89714 0.98912 0.93792 1.67962 1.07915 1.31076 1.12581 1.18523 0.92114 0.89503 1.04367 0.86491 0.91664 0.90975 0.82205 0.82426 0.83640 0.87444 0.92209 0.88481 0.95461 0.92542 0.93014 0.99231 0.93246 0.92675 0.95775 0.96286 0.92727 0.82735 0.79849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.81 113.37 1.11 1.33 16 2 O -0.32 -8.63 10.29 -91.77 -0.94 -9.58 16 3 C 0.13 3.65 6.71 22.58 0.15 3.80 16 4 C -0.20 -4.45 8.98 22.12 0.20 -4.25 16 5 C -0.08 -1.71 9.95 22.03 0.22 -1.49 16 6 C -0.13 -3.23 9.32 22.33 0.21 -3.03 16 7 C -0.07 -1.97 5.74 -21.28 -0.12 -2.09 16 8 C -0.03 -0.79 3.71 -19.63 -0.07 -0.87 16 9 C 0.09 2.31 4.74 85.56 0.41 2.71 16 10 N -0.53 -16.99 4.80 -900.91 -4.32 -21.32 16 11 C 0.07 2.09 5.43 86.33 0.47 2.56 16 12 C -0.10 -3.96 5.32 30.65 0.16 -3.80 16 13 C 0.05 2.29 2.16 -11.46 -0.02 2.26 16 14 C -0.53 -29.64 8.57 25.60 0.22 -29.42 16 15 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.60 5.31 84.66 0.45 1.05 16 17 N -0.92 -54.04 11.37 21.45 0.24 -53.79 16 18 Si 0.95 44.40 29.54 68.60 2.03 46.43 16 19 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C -0.09 -4.55 5.12 30.65 0.16 -4.39 16 23 C 0.08 2.97 4.83 86.33 0.42 3.39 16 24 C -0.17 -4.18 8.69 22.14 0.19 -3.99 16 25 C 0.11 3.04 11.15 85.07 0.95 3.98 16 26 N -0.49 -15.75 10.13 -188.34 -1.91 -17.65 16 27 C 0.08 2.45 6.62 40.41 0.27 2.71 16 28 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 30 H 0.07 0.81 7.65 -2.38 -0.02 0.79 16 31 H 0.16 2.37 6.20 -2.91 -0.02 2.36 16 32 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 33 H 0.15 3.34 6.68 -2.91 -0.02 3.32 16 34 H 0.11 2.20 7.07 -2.39 -0.02 2.18 16 35 H 0.06 1.33 7.97 -2.39 -0.02 1.31 16 36 H 0.10 2.40 8.12 -2.39 -0.02 2.38 16 37 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 41 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 42 H 0.05 3.09 6.17 -2.39 -0.01 3.07 16 43 H 0.02 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.05 2.15 6.03 -2.39 -0.01 2.14 16 46 H 0.15 3.18 8.05 -2.91 -0.02 3.15 16 47 H 0.18 3.59 8.06 -2.91 -0.02 3.57 16 Total: -1.00 -71.02 370.36 1.41 -69.61 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.96 Total: 15.83 kcal Atomic # 6 Polarization: -34.88 SS G_CDS: 5.36 Total: -29.52 kcal Atomic # 7 Polarization: -86.78 SS G_CDS: -5.99 Total: -92.77 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: -0.94 Total: -9.58 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -71.02 1.41 -69.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237116067.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.623 kcal (2) G-P(sol) polarization free energy of solvation -71.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds