Wall clock time and date at job start Tue Mar 31 2020 14:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35839 * 116.99927 * 2 1 4 4 C 1.36598 * 120.18588 * 0.02562 * 3 2 1 5 5 C 1.39192 * 121.00547 * 179.97438 * 4 3 2 6 6 C 1.36206 * 120.94257 * 0.02639 * 5 4 3 7 7 C 1.40413 * 119.72621 * 359.95529 * 6 5 4 8 8 C 1.40792 * 121.36874 * 180.02562 * 7 6 5 9 9 C 1.50696 * 120.92801 * 0.02562 * 8 7 6 10 10 N 1.46901 * 109.47332 * 74.94045 * 9 8 7 11 11 C 1.46839 * 111.00190 * 199.90724 * 10 9 8 12 12 C 1.53039 * 109.52583 * 174.15857 * 11 10 9 13 13 C 1.53126 * 109.27487 * 59.17929 * 12 11 10 14 14 C 1.53118 * 109.15893 * 302.34551 * 13 12 11 15 15 H 1.09003 * 109.50580 * 297.71051 * 14 13 12 16 16 C 1.50706 * 109.50325 * 177.59855 * 14 13 12 17 17 H 1.08001 * 119.99795 * 240.20041 * 16 14 13 18 18 C 1.37877 * 119.99907 * 60.19253 * 16 14 13 19 19 N 1.31509 * 119.99883 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99932 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47023 * 60.00140 * 20 18 16 22 22 H 1.48498 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47144 * 300.00742 * 20 18 16 24 24 C 1.46845 * 111.00038 * 75.69209 * 10 9 8 25 25 C 1.36575 * 118.14389 * 180.27315 * 8 7 6 26 26 C 1.39335 * 119.93046 * 359.54688 * 25 8 7 27 27 N 1.31085 * 121.73663 * 0.44777 * 26 25 8 28 28 C 1.33600 * 121.33085 * 359.78891 * 27 26 25 29 29 H 1.09005 * 109.47463 * 300.00220 * 1 2 3 30 30 H 1.09001 * 109.47189 * 60.00209 * 1 2 3 31 31 H 1.09002 * 109.47641 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.49418 * 359.96222 * 4 3 2 33 33 H 1.08004 * 119.53146 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.13962 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47041 * 314.94298 * 9 8 7 36 36 H 1.08999 * 109.47059 * 194.94204 * 9 8 7 37 37 H 1.09004 * 109.46262 * 294.17340 * 11 10 9 38 38 H 1.09002 * 109.46571 * 54.14334 * 11 10 9 39 39 H 1.08997 * 109.50403 * 299.23821 * 12 11 10 40 40 H 1.08998 * 109.53631 * 179.13319 * 12 11 10 41 41 H 1.09001 * 109.51796 * 182.44352 * 13 12 11 42 42 H 1.08994 * 109.57442 * 62.28479 * 13 12 11 43 43 H 0.97001 * 119.99745 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.46639 * 305.85723 * 24 10 9 45 45 H 1.08998 * 109.45906 * 65.82631 * 24 10 9 46 46 H 1.08001 * 120.02986 * 179.75065 * 25 8 7 47 47 H 1.07994 * 119.13477 * 180.25698 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.3054 2.3583 0.0005 5 6 1.9195 3.6075 0.0011 6 6 3.2768 3.7206 0.0006 7 6 4.0719 2.5632 0.0004 8 6 5.4778 2.6399 0.0004 9 6 6.1808 3.9728 0.0012 10 7 6.0910 4.5731 1.3389 11 6 6.3257 6.0215 1.2827 12 6 6.0818 6.6333 2.6641 13 6 7.0265 5.9832 3.6788 14 6 6.7953 4.4696 3.6828 15 1 5.7734 4.2584 3.9980 16 6 7.7620 3.8154 4.6360 17 1 8.4657 3.0813 4.2722 18 6 7.7482 4.1542 5.9724 19 7 6.8911 5.0479 6.4154 20 14 8.9469 3.3439 7.1538 21 1 10.3384 3.6350 6.7243 22 1 8.7293 3.8766 8.5228 23 1 8.7259 1.8754 7.1536 24 6 7.0185 3.9206 2.2718 25 6 6.1866 1.4725 -0.0055 26 6 5.5152 0.2515 -0.0017 27 7 4.2061 0.1845 -0.0013 28 6 3.4539 1.2886 -0.0002 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2272 2.2958 0.0003 33 1 1.3110 4.4998 0.0019 34 1 3.7397 4.6964 0.0014 35 1 5.7081 4.6332 -0.7258 36 1 7.2285 3.8311 -0.2639 37 1 7.3551 6.2110 0.9782 38 1 5.6448 6.4721 0.5606 39 1 5.0488 6.4561 2.9632 40 1 6.2709 7.7060 2.6262 41 1 6.8264 6.3849 4.6721 42 1 8.0597 6.1931 3.4023 43 1 6.8811 5.2859 7.3556 44 1 6.8407 2.8452 2.2683 45 1 8.0445 4.1199 1.9627 46 1 7.2663 1.4958 -0.0097 47 1 6.0885 -0.6637 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237118491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:29 Heat of formation + Delta-G solvation = 17.042124 kcal Electronic energy + Delta-G solvation = -27946.513160 eV Core-core repulsion = 24287.136442 eV Total energy + Delta-G solvation = -3659.376718 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.03254 -39.10636 -38.09183 -36.37764 -34.59482 -32.92783 -31.20416 -30.56296 -29.91153 -29.42277 -27.42255 -26.40660 -24.96218 -23.70299 -23.26313 -22.14939 -21.37484 -20.58677 -18.66568 -18.28902 -17.73890 -16.75917 -16.35049 -16.04352 -15.87325 -15.21559 -15.07967 -14.53377 -14.48808 -14.24601 -13.88081 -13.60194 -13.40894 -13.31540 -13.09024 -12.70664 -12.39457 -12.11574 -12.02151 -11.93229 -11.81844 -11.67646 -11.43694 -11.15466 -10.97456 -10.92924 -10.71498 -10.66429 -10.14638 -9.85942 -9.77222 -9.46708 -9.37469 -9.05271 -8.73590 -8.69209 -8.29781 -7.80292 -7.62276 -5.96688 -4.02788 0.59027 0.91016 2.12417 3.04996 3.13375 3.32854 3.37590 3.40037 4.13635 4.30598 4.41788 4.55300 4.71298 4.84681 4.89981 4.99447 5.01716 5.02646 5.19033 5.24077 5.33519 5.36131 5.40373 5.47966 5.56541 5.62737 5.72092 5.83219 5.95250 6.01630 6.06323 6.13663 6.20709 6.34810 6.36718 6.48768 6.54194 6.66970 6.69234 6.73143 6.83616 6.94843 7.19734 7.28256 7.36240 7.59228 7.71458 7.77359 8.06748 8.08811 8.17281 8.48032 9.00792 9.61460 11.09363 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003544 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.358699 B = 7899.086911 C = 8416.939387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.297 6.297 3 C 0.151 3.849 4 C -0.211 4.211 5 C -0.087 4.087 6 C -0.110 4.110 7 C -0.048 4.048 8 C -0.009 4.009 9 C 0.088 3.912 10 N -0.531 5.531 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.111 4.111 14 C 0.057 3.943 15 H 0.033 0.967 16 C -0.515 4.515 17 H 0.052 0.948 18 C 0.064 3.936 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.068 3.932 25 C -0.163 4.163 26 C 0.122 3.878 27 N -0.460 5.460 28 C 0.108 3.892 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.099 0.901 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.081 0.919 36 H 0.046 0.954 37 H 0.025 0.975 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.090 0.910 42 H 0.030 0.970 43 H 0.260 0.740 44 H 0.059 0.941 45 H 0.020 0.980 46 H 0.135 0.865 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.098 -2.951 -16.166 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.209 6.209 3 C 0.104 3.896 4 C -0.232 4.232 5 C -0.105 4.105 6 C -0.129 4.129 7 C -0.051 4.051 8 C -0.018 4.018 9 C -0.039 4.039 10 N -0.256 5.256 11 C -0.064 4.064 12 C -0.155 4.155 13 C -0.149 4.149 14 C 0.038 3.962 15 H 0.051 0.949 16 C -0.554 4.554 17 H 0.070 0.930 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.059 4.059 25 C -0.184 4.184 26 C -0.050 4.050 27 N -0.168 5.168 28 C -0.014 4.014 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.153 0.847 35 H 0.099 0.901 36 H 0.065 0.935 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.048 0.952 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.038 0.962 46 H 0.153 0.847 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.079 -3.901 -15.817 19.157 hybrid contribution 1.691 0.609 0.550 1.879 sum -8.388 -3.292 -15.267 17.728 Atomic orbital electron populations 1.23097 0.78836 1.03915 1.01267 1.86179 1.20677 1.26243 1.87758 1.18419 0.89906 0.84805 0.96462 1.20813 1.00063 0.92133 1.10158 1.20576 0.94801 0.96664 0.98478 1.20918 0.93266 0.97918 1.00757 1.18376 0.93561 0.93202 0.99925 1.20041 0.92090 0.95788 0.93881 1.21012 0.97914 0.92020 0.93000 1.62000 1.54451 1.03295 1.05829 1.22058 0.98161 0.87580 0.98569 1.21672 1.01569 0.97631 0.94584 1.21658 0.95399 0.98590 0.99257 1.18633 0.97654 0.91574 0.88315 0.94893 1.21098 1.18477 1.23078 0.92767 0.92957 1.24916 0.95600 0.95082 0.98130 1.69877 1.35970 1.31977 1.14858 0.86704 0.81570 0.79835 0.80154 1.20371 1.21305 1.20294 1.22355 0.91234 0.97789 0.94506 1.21850 1.01572 0.92999 1.01975 1.22847 0.90056 0.97563 0.94531 1.67950 1.06838 1.30391 1.11605 1.18100 0.90968 0.89097 1.03228 0.92567 0.92749 0.88239 0.85251 0.85621 0.84727 0.90078 0.93548 0.95687 0.92363 0.92052 0.93441 0.89124 0.95152 0.93020 0.92265 0.96165 0.84679 0.82506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.18 10.29 -19.23 -0.20 -4.37 16 3 C 0.15 2.26 6.71 -39.11 -0.26 1.99 16 4 C -0.21 -2.63 8.98 -39.82 -0.36 -2.98 16 5 C -0.09 -1.07 9.95 -39.96 -0.40 -1.47 16 6 C -0.11 -1.54 9.33 -39.49 -0.37 -1.91 16 7 C -0.05 -0.76 5.74 -106.81 -0.61 -1.37 16 8 C -0.01 -0.14 4.84 -104.26 -0.51 -0.64 16 9 C 0.09 1.25 4.34 -4.98 -0.02 1.23 16 10 N -0.53 -9.24 4.48 -236.13 -1.06 -10.30 16 11 C 0.06 1.04 5.43 -3.84 -0.02 1.02 16 12 C -0.12 -2.19 6.09 -26.65 -0.16 -2.35 16 13 C -0.11 -2.58 5.03 -26.61 -0.13 -2.71 16 14 C 0.06 1.42 2.26 -91.69 -0.21 1.21 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.52 -14.13 8.56 -34.44 -0.29 -14.43 16 17 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.78 5.30 -17.82 -0.09 1.68 16 19 N -0.89 -25.38 11.36 55.43 0.63 -24.75 16 20 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.07 1.41 4.51 -3.84 -0.02 1.39 16 25 C -0.16 -2.27 9.16 -39.77 -0.36 -2.64 16 26 C 0.12 1.74 11.15 -17.46 -0.19 1.54 16 27 N -0.46 -7.70 10.13 -10.88 -0.11 -7.81 16 28 C 0.11 1.81 6.62 -84.73 -0.56 1.25 16 29 H 0.06 0.44 7.65 -51.93 -0.40 0.05 16 30 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.13 1.22 6.20 -52.49 -0.33 0.90 16 33 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.13 1.77 6.73 -52.48 -0.35 1.42 16 35 H 0.08 0.99 7.02 -51.93 -0.36 0.63 16 36 H 0.05 0.62 7.84 -51.93 -0.41 0.21 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.06 0.79 7.93 -51.93 -0.41 0.38 16 39 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 2.37 6.17 -51.93 -0.32 2.05 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 44 H 0.06 1.26 7.07 -51.93 -0.37 0.90 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.14 1.59 8.02 -52.49 -0.42 1.17 16 47 H 0.16 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 372.38 15.07 5.61 5.61 Total: -1.00 -31.60 372.38 -10.84 -42.44 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.11 Total: 0.83 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -3.59 Total: -17.99 kcal Atomic # 7 Polarization: -42.33 SS G_CDS: -0.54 Total: -42.86 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.20 Total: -4.37 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.60 -10.84 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237118491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.484 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds