Wall clock time and date at job start Tue Mar 31 2020 14:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35839 * 116.99927 * 2 1 4 4 C 1.36598 * 120.18588 * 0.02562 * 3 2 1 5 5 C 1.39192 * 121.00547 * 179.97438 * 4 3 2 6 6 C 1.36206 * 120.94257 * 0.02639 * 5 4 3 7 7 C 1.40413 * 119.72621 * 359.95529 * 6 5 4 8 8 C 1.40792 * 121.36874 * 180.02562 * 7 6 5 9 9 C 1.50696 * 120.92801 * 0.02562 * 8 7 6 10 10 N 1.46901 * 109.47332 * 74.94045 * 9 8 7 11 11 C 1.46839 * 111.00190 * 199.90724 * 10 9 8 12 12 C 1.53039 * 109.52583 * 174.15857 * 11 10 9 13 13 C 1.53126 * 109.27487 * 59.17929 * 12 11 10 14 14 C 1.53118 * 109.15893 * 302.34551 * 13 12 11 15 15 H 1.09003 * 109.50580 * 297.71051 * 14 13 12 16 16 C 1.50706 * 109.50325 * 177.59855 * 14 13 12 17 17 H 1.08001 * 119.99795 * 240.20041 * 16 14 13 18 18 C 1.37877 * 119.99907 * 60.19253 * 16 14 13 19 19 N 1.31509 * 119.99883 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99932 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47023 * 60.00140 * 20 18 16 22 22 H 1.48498 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47144 * 300.00742 * 20 18 16 24 24 C 1.46845 * 111.00038 * 75.69209 * 10 9 8 25 25 C 1.36575 * 118.14389 * 180.27315 * 8 7 6 26 26 C 1.39335 * 119.93046 * 359.54688 * 25 8 7 27 27 N 1.31085 * 121.73663 * 0.44777 * 26 25 8 28 28 C 1.33600 * 121.33085 * 359.78891 * 27 26 25 29 29 H 1.09005 * 109.47463 * 300.00220 * 1 2 3 30 30 H 1.09001 * 109.47189 * 60.00209 * 1 2 3 31 31 H 1.09002 * 109.47641 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.49418 * 359.96222 * 4 3 2 33 33 H 1.08004 * 119.53146 * 180.02562 * 5 4 3 34 34 H 1.08003 * 120.13962 * 180.02562 * 6 5 4 35 35 H 1.08998 * 109.47041 * 314.94298 * 9 8 7 36 36 H 1.08999 * 109.47059 * 194.94204 * 9 8 7 37 37 H 1.09004 * 109.46262 * 294.17340 * 11 10 9 38 38 H 1.09002 * 109.46571 * 54.14334 * 11 10 9 39 39 H 1.08997 * 109.50403 * 299.23821 * 12 11 10 40 40 H 1.08998 * 109.53631 * 179.13319 * 12 11 10 41 41 H 1.09001 * 109.51796 * 182.44352 * 13 12 11 42 42 H 1.08994 * 109.57442 * 62.28479 * 13 12 11 43 43 H 0.97001 * 119.99745 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.46639 * 305.85723 * 24 10 9 45 45 H 1.08998 * 109.45906 * 65.82631 * 24 10 9 46 46 H 1.08001 * 120.02986 * 179.75065 * 25 8 7 47 47 H 1.07994 * 119.13477 * 180.25698 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2103 0.0000 4 6 1.3054 2.3583 0.0005 5 6 1.9195 3.6075 0.0011 6 6 3.2768 3.7206 0.0006 7 6 4.0719 2.5632 0.0004 8 6 5.4778 2.6399 0.0004 9 6 6.1808 3.9728 0.0012 10 7 6.0910 4.5731 1.3389 11 6 6.3257 6.0215 1.2827 12 6 6.0818 6.6333 2.6641 13 6 7.0265 5.9832 3.6788 14 6 6.7953 4.4696 3.6828 15 1 5.7734 4.2584 3.9980 16 6 7.7620 3.8154 4.6360 17 1 8.4657 3.0813 4.2722 18 6 7.7482 4.1542 5.9724 19 7 6.8911 5.0479 6.4154 20 14 8.9469 3.3439 7.1538 21 1 10.3384 3.6350 6.7243 22 1 8.7293 3.8766 8.5228 23 1 8.7259 1.8754 7.1536 24 6 7.0185 3.9206 2.2718 25 6 6.1866 1.4725 -0.0055 26 6 5.5152 0.2515 -0.0017 27 7 4.2061 0.1845 -0.0013 28 6 3.4539 1.2886 -0.0002 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2272 2.2958 0.0003 33 1 1.3110 4.4998 0.0019 34 1 3.7397 4.6964 0.0014 35 1 5.7081 4.6332 -0.7258 36 1 7.2285 3.8311 -0.2639 37 1 7.3551 6.2110 0.9782 38 1 5.6448 6.4721 0.5606 39 1 5.0488 6.4561 2.9632 40 1 6.2709 7.7060 2.6262 41 1 6.8264 6.3849 4.6721 42 1 8.0597 6.1931 3.4023 43 1 6.8811 5.2859 7.3556 44 1 6.8407 2.8452 2.2683 45 1 8.0445 4.1199 1.9627 46 1 7.2663 1.4958 -0.0097 47 1 6.0885 -0.6637 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237118491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:28 Heat of formation + Delta-G solvation = -1.930397 kcal Electronic energy + Delta-G solvation = -27947.335871 eV Core-core repulsion = 24287.136442 eV Total energy + Delta-G solvation = -3660.199428 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.07144 -40.18721 -39.47922 -37.37554 -36.09526 -34.59662 -32.68893 -31.70322 -31.56484 -30.44706 -28.19960 -27.68346 -26.91049 -24.82259 -24.36313 -23.50241 -23.05768 -21.70505 -20.34008 -19.26283 -18.81570 -18.38991 -17.75665 -17.07074 -16.90094 -16.72777 -16.28758 -16.06979 -15.60634 -15.46213 -15.02352 -14.93478 -14.82482 -14.54915 -14.26970 -14.16276 -14.08526 -13.48707 -13.24546 -13.06243 -12.84500 -12.81241 -12.79780 -12.69237 -12.55063 -12.40626 -12.08628 -11.91807 -11.79179 -11.68015 -11.35862 -10.99153 -10.71928 -10.68617 -10.44507 -10.36648 -9.75811 -9.14355 -8.68191 -8.08129 -6.22074 -0.46618 -0.14031 1.04496 1.40118 1.41543 1.48819 2.03489 2.27142 2.42134 2.99310 3.18974 3.26817 3.36049 3.69556 3.78846 3.96709 3.99936 4.11552 4.21466 4.26351 4.31609 4.38245 4.39873 4.42038 4.44386 4.54879 4.56385 4.67465 4.72229 4.74014 4.80573 4.90979 4.94132 4.99999 5.08413 5.11921 5.14397 5.20801 5.34049 5.43289 5.53885 5.54799 5.63606 5.65887 5.84021 5.97501 6.14722 6.22440 6.33701 6.36533 6.46305 6.90964 6.98924 7.45734 8.96177 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.012994 B = 0.003544 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.358699 B = 7899.086911 C = 8416.939387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.129 3.871 4 C -0.205 4.205 5 C -0.083 4.083 6 C -0.125 4.125 7 C -0.065 4.065 8 C -0.025 4.025 9 C 0.094 3.906 10 N -0.540 5.540 11 C 0.067 3.933 12 C -0.110 4.110 13 C -0.104 4.104 14 C 0.056 3.944 15 H -0.012 1.012 16 C -0.538 4.538 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.915 5.915 20 Si 0.951 3.049 21 H -0.269 1.269 22 H -0.284 1.284 23 H -0.275 1.275 24 C 0.086 3.914 25 C -0.167 4.167 26 C 0.114 3.886 27 N -0.490 5.490 28 C 0.075 3.925 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.117 0.883 32 H 0.160 0.840 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.108 0.892 36 H 0.059 0.941 37 H 0.033 0.967 38 H 0.097 0.903 39 H 0.048 0.952 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.024 0.976 43 H 0.260 0.740 44 H 0.047 0.953 45 H 0.021 0.979 46 H 0.155 0.845 47 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.402 -2.214 -17.715 20.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.237 6.237 3 C 0.082 3.918 4 C -0.225 4.225 5 C -0.101 4.101 6 C -0.144 4.144 7 C -0.068 4.068 8 C -0.033 4.033 9 C -0.033 4.033 10 N -0.265 5.265 11 C -0.060 4.060 12 C -0.148 4.148 13 C -0.142 4.142 14 C 0.037 3.963 15 H 0.006 0.994 16 C -0.576 4.576 17 H 0.068 0.932 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.776 3.224 21 H -0.194 1.194 22 H -0.209 1.209 23 H -0.200 1.200 24 C -0.041 4.041 25 C -0.187 4.187 26 C -0.058 4.058 27 N -0.198 5.198 28 C -0.047 4.047 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.178 0.822 33 H 0.176 0.824 34 H 0.162 0.838 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.115 0.885 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.039 0.961 46 H 0.173 0.827 47 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.392 -3.162 -17.386 20.501 hybrid contribution 1.684 0.343 1.036 2.007 sum -8.708 -2.819 -16.351 18.738 Atomic orbital electron populations 1.23413 0.76393 1.05621 1.02489 1.86131 1.23307 1.26354 1.87864 1.18675 0.89826 0.85905 0.97396 1.21190 1.01540 0.91391 1.08362 1.21000 0.94638 0.97815 0.96622 1.21115 0.94058 0.97692 1.01512 1.18624 0.94225 0.93569 1.00336 1.20258 0.92184 0.96528 0.94361 1.21061 0.98899 0.91936 0.91399 1.61853 1.53380 1.04010 1.07240 1.22087 0.99738 0.86657 0.97506 1.21575 0.99341 0.98936 0.94900 1.21455 0.96216 0.97643 0.98935 1.18533 0.94312 0.92914 0.90524 0.99429 1.21516 1.18965 1.23270 0.93870 0.93166 1.25690 0.97228 0.95635 0.99806 1.70030 1.37318 1.33031 1.15022 0.85731 0.79769 0.78822 0.78055 1.19379 1.20920 1.20000 1.21928 0.91986 0.97088 0.93116 1.22118 1.02580 0.92743 1.01307 1.23345 0.89743 0.98937 0.93812 1.67953 1.07941 1.31117 1.12804 1.18543 0.92131 0.89583 1.04457 0.91727 0.90950 0.86486 0.82218 0.82411 0.83819 0.87391 0.92268 0.94870 0.88455 0.93335 0.90998 0.92733 0.95687 0.93136 0.93488 0.96069 0.82715 0.79921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.24 9.81 113.37 1.11 1.35 16 2 O -0.32 -9.10 10.29 -91.74 -0.94 -10.04 16 3 C 0.13 3.83 6.71 22.57 0.15 3.98 16 4 C -0.20 -4.74 8.98 22.12 0.20 -4.54 16 5 C -0.08 -1.86 9.95 22.03 0.22 -1.64 16 6 C -0.12 -3.31 9.33 22.33 0.21 -3.10 16 7 C -0.07 -2.03 5.74 -21.28 -0.12 -2.15 16 8 C -0.02 -0.72 4.84 -19.63 -0.10 -0.81 16 9 C 0.09 2.45 4.34 85.56 0.37 2.82 16 10 N -0.54 -17.94 4.48 -900.97 -4.04 -21.98 16 11 C 0.07 1.99 5.43 86.33 0.47 2.46 16 12 C -0.11 -3.98 6.09 30.65 0.19 -3.79 16 13 C -0.10 -4.92 5.03 30.68 0.15 -4.77 16 14 C 0.06 2.86 2.26 -11.49 -0.03 2.84 16 15 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 16 C -0.54 -30.22 8.56 25.60 0.22 -30.00 16 17 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 18 C 0.02 0.86 5.30 84.66 0.45 1.31 16 19 N -0.91 -53.86 11.36 21.45 0.24 -53.62 16 20 Si 0.95 44.34 29.54 68.60 2.03 46.37 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 24 C 0.09 3.58 4.51 86.32 0.39 3.97 16 25 C -0.17 -4.56 9.16 22.14 0.20 -4.36 16 26 C 0.11 3.24 11.15 85.07 0.95 4.19 16 27 N -0.49 -16.78 10.13 -188.35 -1.91 -18.69 16 28 C 0.07 2.52 6.62 40.41 0.27 2.79 16 29 H 0.06 0.91 7.65 -2.38 -0.02 0.89 16 30 H 0.07 0.88 7.65 -2.39 -0.02 0.86 16 31 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.16 2.56 6.20 -2.91 -0.02 2.54 16 33 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 34 H 0.14 3.42 6.73 -2.91 -0.02 3.40 16 35 H 0.11 2.24 7.02 -2.39 -0.02 2.22 16 36 H 0.06 1.41 7.84 -2.39 -0.02 1.40 16 37 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.10 2.20 7.93 -2.39 -0.02 2.18 16 39 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.95 6.17 -2.39 -0.01 2.94 16 42 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 44 H 0.05 2.03 7.07 -2.39 -0.02 2.01 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.16 3.44 8.02 -2.91 -0.02 3.42 16 47 H 0.18 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -72.25 372.38 1.65 -70.60 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: 0.96 Total: 16.82 kcal Atomic # 6 Polarization: -34.77 SS G_CDS: 5.30 Total: -29.47 kcal Atomic # 7 Polarization: -88.58 SS G_CDS: -5.70 Total: -94.28 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.94 Total: -10.04 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -72.25 1.65 -70.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237118491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.670 kcal (2) G-P(sol) polarization free energy of solvation -72.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds