Wall clock time and date at job start Tue Mar 31 2020 14:23:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35640 * 117.00064 * 2 1 4 4 C 1.39115 * 119.88217 * 359.97438 * 3 2 1 5 5 C 1.36435 * 120.43728 * 179.70203 * 4 3 2 6 6 C 1.40904 * 120.17098 * 0.02562 * 5 4 3 7 7 C 1.41226 * 120.12848 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99878 * 330.13007 * 7 6 5 9 9 C 1.39859 * 120.00399 * 150.12307 * 7 6 5 10 10 N 1.30897 * 120.00144 * 161.71443 * 9 7 6 11 11 Si 1.86797 * 119.99736 * 341.71696 * 9 7 6 12 12 H 1.48505 * 109.47202 * 95.41335 * 11 9 7 13 13 H 1.48506 * 109.47063 * 215.41153 * 11 9 7 14 14 H 1.48496 * 109.47365 * 335.41116 * 11 9 7 15 15 C 1.40647 * 119.75318 * 359.97438 * 6 5 4 16 16 C 1.38512 * 119.57601 * 359.97438 * 15 6 5 17 17 C 1.48463 * 120.08572 * 180.02562 * 16 15 6 18 18 C 1.40844 * 126.21748 * 130.00358 * 17 16 15 19 19 N 1.30684 * 108.10672 * 179.97438 * 18 17 16 20 20 N 1.40007 * 108.52413 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.89773 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47177 * 214.97924 * 21 20 19 23 23 C 1.53004 * 109.47036 * 179.97438 * 22 21 20 24 24 C 1.52993 * 109.47314 * 59.99818 * 23 22 21 25 25 C 1.52997 * 109.47218 * 300.00070 * 24 23 22 26 26 C 1.52993 * 109.47297 * 94.97666 * 21 20 19 27 27 C 1.34875 * 108.20847 * 359.75927 * 20 19 18 28 28 H 1.09002 * 109.47754 * 300.00747 * 1 2 3 29 29 H 1.09004 * 109.46903 * 60.00361 * 1 2 3 30 30 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.78283 * 359.72269 * 4 3 2 32 32 H 1.07998 * 119.91783 * 180.02562 * 5 4 3 33 33 H 0.96995 * 119.99928 * 180.02562 * 10 9 7 34 34 H 1.07997 * 120.21167 * 179.97438 * 15 6 5 35 35 H 1.08000 * 125.95303 * 359.97269 * 18 17 16 36 36 H 1.09001 * 109.46594 * 334.97765 * 21 20 19 37 37 H 1.09001 * 109.47229 * 299.99452 * 22 21 20 38 38 H 1.08996 * 109.47549 * 60.00043 * 22 21 20 39 39 H 1.09001 * 109.47046 * 299.99395 * 23 22 21 40 40 H 1.09002 * 109.46845 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.47296 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47409 * 59.99800 * 24 23 22 43 43 H 1.09001 * 109.47229 * 300.00241 * 25 24 23 44 44 H 1.08996 * 109.47549 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47440 * 300.00136 * 26 21 20 46 46 H 1.09001 * 109.47409 * 59.99962 * 26 21 20 47 47 H 1.07995 * 126.19783 * 180.23898 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2847 2.3737 -0.0005 5 6 1.8923 3.5953 0.0056 6 6 3.2983 3.6868 0.0120 7 6 3.9263 4.9518 0.0188 8 1 3.4420 5.7976 -0.4463 9 6 5.1754 5.1092 0.6281 10 7 5.9175 6.1484 0.3405 11 14 5.7845 3.8364 1.8521 12 1 6.6537 2.8550 1.1545 13 1 6.5606 4.5114 2.9232 14 1 4.6235 3.1310 2.4518 15 6 4.0742 2.5137 0.0125 16 6 3.4465 1.2790 0.0074 17 6 4.2544 0.0334 0.0085 18 6 4.0906 -1.0639 0.8761 19 7 4.9867 -1.9635 0.5668 20 7 5.7513 -1.4806 -0.5020 21 6 6.8611 -2.1832 -1.1508 22 6 7.9260 -1.1708 -1.5774 23 6 9.0853 -1.9048 -2.2544 24 6 8.5674 -2.6498 -3.4862 25 6 7.5026 -3.6622 -3.0596 26 6 6.3428 -2.9279 -2.3827 27 6 5.2861 -0.2592 -0.8351 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2065 2.3109 -0.0055 32 1 1.2941 4.4944 0.0055 33 1 6.7839 6.2574 0.7628 34 1 5.1524 2.5753 0.0170 35 1 3.3530 -1.1475 1.6605 36 1 7.2975 -2.8968 -0.4518 37 1 7.4896 -0.4573 -2.2764 38 1 8.2953 -0.6403 -0.6998 39 1 9.5216 -2.6180 -1.5551 40 1 9.8441 -1.1835 -2.5579 41 1 9.3934 -3.1723 -3.9688 42 1 8.1311 -1.9366 -4.1855 43 1 7.9388 -4.3755 -2.3603 44 1 7.1332 -4.1927 -3.9372 45 1 5.5842 -3.6492 -2.0788 46 1 5.9063 -2.2143 -3.0816 47 1 5.6637 0.3737 -1.6244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241841089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:02 Heat of formation + Delta-G solvation = 38.764521 kcal Electronic energy + Delta-G solvation = -27743.004141 eV Core-core repulsion = 24084.569377 eV Total energy + Delta-G solvation = -3658.434764 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.92780 -38.93498 -38.31070 -36.47431 -33.44047 -32.95386 -31.37238 -31.05636 -29.83485 -29.09862 -27.68109 -26.80352 -24.46842 -23.38568 -22.93507 -21.77411 -21.03205 -20.43316 -19.81077 -19.13360 -17.56781 -17.20866 -16.50551 -15.41176 -15.17592 -15.00179 -14.89113 -14.74212 -14.54058 -14.26959 -14.01816 -13.87063 -13.09012 -13.02918 -12.94863 -12.63182 -12.57401 -12.47164 -12.39720 -12.23074 -11.79368 -11.52206 -11.42221 -11.38364 -11.01661 -10.90841 -10.74787 -10.72255 -10.54776 -10.40130 -10.24055 -10.11134 -9.87794 -9.48212 -9.03864 -8.97819 -8.39909 -7.48310 -6.96770 -6.87262 -4.35138 2.15905 2.51982 2.65442 2.74375 3.15117 3.22454 3.38114 3.49542 4.04166 4.23635 4.31125 4.44256 4.51082 4.60966 4.75732 4.90258 5.01092 5.13747 5.16654 5.27627 5.31825 5.34161 5.43378 5.51957 5.57334 5.64287 5.74068 5.74582 5.76723 5.80312 5.83896 5.90924 5.93030 5.95739 6.00748 6.09855 6.20331 6.29522 6.47738 6.61426 6.80899 6.94637 7.11539 7.26247 7.38908 7.39727 7.58773 7.84250 7.95876 8.14606 8.33626 8.44292 8.71877 8.86752 10.15628 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.004478 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.693552 B = 6251.135484 C = 8100.734005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.321 6.321 3 C 0.009 3.991 4 C -0.158 4.158 5 C -0.174 4.174 6 C 0.072 3.928 7 C -0.451 4.451 8 H 0.089 0.911 9 C 0.086 3.914 10 N -0.816 5.816 11 Si 0.903 3.097 12 H -0.271 1.271 13 H -0.292 1.292 14 H -0.243 1.243 15 C -0.197 4.197 16 C 0.003 3.997 17 C -0.165 4.165 18 C 0.073 3.927 19 N -0.311 5.311 20 N -0.374 5.374 21 C 0.169 3.831 22 C -0.133 4.133 23 C -0.113 4.113 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.130 4.130 27 C 0.055 3.945 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.283 0.717 34 H 0.107 0.893 35 H 0.179 0.821 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.797 -15.727 -4.623 16.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.236 6.236 3 C -0.035 4.035 4 C -0.177 4.177 5 C -0.194 4.194 6 C 0.070 3.930 7 C -0.481 4.481 8 H 0.107 0.893 9 C -0.131 4.131 10 N -0.441 5.441 11 Si 0.730 3.270 12 H -0.197 1.197 13 H -0.220 1.220 14 H -0.166 1.166 15 C -0.216 4.216 16 C 0.001 3.999 17 C -0.176 4.176 18 C -0.114 4.114 19 N -0.131 5.131 20 N -0.156 5.156 21 C 0.067 3.933 22 C -0.172 4.172 23 C -0.151 4.151 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.169 4.169 27 C -0.090 4.090 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.100 0.900 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.093 0.907 34 H 0.125 0.875 35 H 0.196 0.804 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.088 0.912 47 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 3.682 -16.940 -4.391 17.883 hybrid contribution -0.295 0.724 0.336 0.851 sum 3.387 -16.216 -4.055 17.055 Atomic orbital electron populations 1.22738 0.81078 1.01844 1.00315 1.85895 1.18864 1.27987 1.90870 1.18479 0.90695 0.83172 1.11112 1.20486 0.97790 0.92796 1.06629 1.20656 0.94487 0.95439 1.08806 1.17621 0.91518 0.92798 0.91101 1.19325 1.01134 0.95465 1.32128 0.89277 1.26053 0.95110 0.95741 0.96219 1.69728 1.09939 1.28288 1.36147 0.86432 0.80120 0.80206 0.80262 1.19739 1.21988 1.16635 1.20943 0.98104 0.90850 1.11712 1.17033 0.88412 0.90525 1.03910 1.18893 1.00699 0.97233 1.00789 1.23850 0.97026 0.91066 0.99409 1.77104 1.08357 1.23391 1.04291 1.48487 1.27047 1.13535 1.26545 1.21155 0.84090 0.94120 0.93925 1.21960 0.95556 0.97965 1.01711 1.21480 0.97015 0.99455 0.97192 1.21602 0.98481 0.98344 0.97709 1.21510 0.95527 0.97844 1.00399 1.21996 0.98518 0.99940 0.96422 1.22412 0.97082 0.88448 1.01010 0.93851 0.93951 0.89992 0.87960 0.87902 0.90699 0.87493 0.80428 0.88521 0.90630 0.90765 0.91613 0.91065 0.91651 0.91594 0.91667 0.91385 0.91081 0.91153 0.81410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 9.80 101.05 0.99 1.51 16 2 O -0.32 -6.12 9.37 -18.62 -0.17 -6.29 16 3 C 0.01 0.20 6.70 -38.46 -0.26 -0.06 16 4 C -0.16 -3.29 8.95 -39.91 -0.36 -3.65 16 5 C -0.17 -3.98 9.72 -39.22 -0.38 -4.36 16 6 C 0.07 1.81 5.10 -106.84 -0.55 1.27 16 7 C -0.45 -12.13 9.55 -37.84 -0.36 -12.49 16 8 H 0.09 2.50 8.06 -52.49 -0.42 2.07 16 9 C 0.09 2.27 5.40 -17.34 -0.09 2.18 16 10 N -0.82 -21.87 13.93 55.54 0.77 -21.09 16 11 Si 0.90 21.28 24.51 -169.99 -4.17 17.11 16 12 H -0.27 -6.26 6.70 56.52 0.38 -5.88 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.24 -5.92 6.86 56.52 0.39 -5.53 16 15 C -0.20 -4.73 6.81 -38.57 -0.26 -4.99 16 16 C 0.00 0.07 5.76 -104.79 -0.60 -0.54 16 17 C -0.17 -3.34 5.31 -105.35 -0.56 -3.90 16 18 C 0.07 1.38 11.28 -17.05 -0.19 1.18 16 19 N -0.31 -5.67 12.54 30.80 0.39 -5.28 16 20 N -0.37 -6.09 3.52 -54.59 -0.19 -6.28 16 21 C 0.17 2.06 3.19 -67.93 -0.22 1.84 16 22 C -0.13 -1.43 4.85 -26.73 -0.13 -1.56 16 23 C -0.11 -0.92 5.92 -26.73 -0.16 -1.08 16 24 C -0.12 -0.93 5.92 -26.74 -0.16 -1.08 16 25 C -0.11 -0.91 5.93 -26.70 -0.16 -1.07 16 26 C -0.13 -1.37 5.53 -26.71 -0.15 -1.52 16 27 C 0.06 0.99 10.46 -16.86 -0.18 0.82 16 28 H 0.04 0.59 7.65 -51.93 -0.40 0.19 16 29 H 0.04 0.58 7.64 -51.93 -0.40 0.18 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.10 1.81 6.26 -52.48 -0.33 1.49 16 32 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 33 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 34 H 0.11 2.60 4.73 -52.49 -0.25 2.35 16 35 H 0.18 3.09 8.06 -52.49 -0.42 2.66 16 36 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.08 0.83 7.15 -51.93 -0.37 0.46 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.17 2.71 7.26 -52.49 -0.38 2.33 16 LS Contribution 373.45 15.07 5.63 5.63 Total: -1.00 -29.71 373.45 -8.73 -38.44 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.21 Total: 5.27 kcal Atomic # 6 Polarization: -23.73 SS G_CDS: -3.77 Total: -27.50 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.97 Total: -32.65 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.17 Total: -6.29 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.17 Total: 17.11 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.71 -8.73 -38.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241841089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.205 kcal (2) G-P(sol) polarization free energy of solvation -29.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds