Wall clock time and date at job start Tue Mar 31 2020 14:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35640 * 117.00064 * 2 1 4 4 C 1.39115 * 119.88217 * 359.97438 * 3 2 1 5 5 C 1.36435 * 120.43728 * 179.70203 * 4 3 2 6 6 C 1.40904 * 120.17098 * 0.02562 * 5 4 3 7 7 C 1.41226 * 120.12848 * 180.02562 * 6 5 4 8 8 H 1.07998 * 119.99878 * 330.13007 * 7 6 5 9 9 C 1.39859 * 120.00399 * 150.12307 * 7 6 5 10 10 N 1.30897 * 120.00144 * 161.71443 * 9 7 6 11 11 Si 1.86797 * 119.99736 * 341.71696 * 9 7 6 12 12 H 1.48505 * 109.47202 * 95.41335 * 11 9 7 13 13 H 1.48506 * 109.47063 * 215.41153 * 11 9 7 14 14 H 1.48496 * 109.47365 * 335.41116 * 11 9 7 15 15 C 1.40647 * 119.75318 * 359.97438 * 6 5 4 16 16 C 1.38512 * 119.57601 * 359.97438 * 15 6 5 17 17 C 1.48463 * 120.08572 * 180.02562 * 16 15 6 18 18 C 1.40844 * 126.21748 * 130.00358 * 17 16 15 19 19 N 1.30684 * 108.10672 * 179.97438 * 18 17 16 20 20 N 1.40007 * 108.52413 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.89773 * 180.02562 * 20 19 18 22 22 C 1.52997 * 109.47177 * 214.97924 * 21 20 19 23 23 C 1.53004 * 109.47036 * 179.97438 * 22 21 20 24 24 C 1.52993 * 109.47314 * 59.99818 * 23 22 21 25 25 C 1.52997 * 109.47218 * 300.00070 * 24 23 22 26 26 C 1.52993 * 109.47297 * 94.97666 * 21 20 19 27 27 C 1.34875 * 108.20847 * 359.75927 * 20 19 18 28 28 H 1.09002 * 109.47754 * 300.00747 * 1 2 3 29 29 H 1.09004 * 109.46903 * 60.00361 * 1 2 3 30 30 H 1.09002 * 109.47532 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.78283 * 359.72269 * 4 3 2 32 32 H 1.07998 * 119.91783 * 180.02562 * 5 4 3 33 33 H 0.96995 * 119.99928 * 180.02562 * 10 9 7 34 34 H 1.07997 * 120.21167 * 179.97438 * 15 6 5 35 35 H 1.08000 * 125.95303 * 359.97269 * 18 17 16 36 36 H 1.09001 * 109.46594 * 334.97765 * 21 20 19 37 37 H 1.09001 * 109.47229 * 299.99452 * 22 21 20 38 38 H 1.08996 * 109.47549 * 60.00043 * 22 21 20 39 39 H 1.09001 * 109.47046 * 299.99395 * 23 22 21 40 40 H 1.09002 * 109.46845 * 180.02562 * 23 22 21 41 41 H 1.08999 * 109.47296 * 179.97438 * 24 23 22 42 42 H 1.09001 * 109.47409 * 59.99800 * 24 23 22 43 43 H 1.09001 * 109.47229 * 300.00241 * 25 24 23 44 44 H 1.08996 * 109.47549 * 179.97438 * 25 24 23 45 45 H 1.09002 * 109.47440 * 300.00136 * 26 21 20 46 46 H 1.09001 * 109.47409 * 59.99962 * 26 21 20 47 47 H 1.07995 * 126.19783 * 180.23898 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 1.2847 2.3737 -0.0005 5 6 1.8923 3.5953 0.0056 6 6 3.2983 3.6868 0.0120 7 6 3.9263 4.9518 0.0188 8 1 3.4420 5.7976 -0.4463 9 6 5.1754 5.1092 0.6281 10 7 5.9175 6.1484 0.3405 11 14 5.7845 3.8364 1.8521 12 1 6.6537 2.8550 1.1545 13 1 6.5606 4.5114 2.9232 14 1 4.6235 3.1310 2.4518 15 6 4.0742 2.5137 0.0125 16 6 3.4465 1.2790 0.0074 17 6 4.2544 0.0334 0.0085 18 6 4.0906 -1.0639 0.8761 19 7 4.9867 -1.9635 0.5668 20 7 5.7513 -1.4806 -0.5020 21 6 6.8611 -2.1832 -1.1508 22 6 7.9260 -1.1708 -1.5774 23 6 9.0853 -1.9048 -2.2544 24 6 8.5674 -2.6498 -3.4862 25 6 7.5026 -3.6622 -3.0596 26 6 6.3428 -2.9279 -2.3827 27 6 5.2861 -0.2592 -0.8351 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2065 2.3109 -0.0055 32 1 1.2941 4.4944 0.0055 33 1 6.7839 6.2574 0.7628 34 1 5.1524 2.5753 0.0170 35 1 3.3530 -1.1475 1.6605 36 1 7.2975 -2.8968 -0.4518 37 1 7.4896 -0.4573 -2.2764 38 1 8.2953 -0.6403 -0.6998 39 1 9.5216 -2.6180 -1.5551 40 1 9.8441 -1.1835 -2.5579 41 1 9.3934 -3.1723 -3.9688 42 1 8.1311 -1.9366 -4.1855 43 1 7.9388 -4.3755 -2.3603 44 1 7.1332 -4.1927 -3.9372 45 1 5.5842 -3.6492 -2.0788 46 1 5.9063 -2.2143 -3.0816 47 1 5.6637 0.3737 -1.6244 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241841089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:01 Heat of formation + Delta-G solvation = 23.562638 kcal Electronic energy + Delta-G solvation = -27743.663344 eV Core-core repulsion = 24084.569377 eV Total energy + Delta-G solvation = -3659.093967 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.27992 -40.48795 -39.24876 -38.15500 -35.27715 -34.16540 -32.88002 -31.84507 -31.64888 -30.32895 -29.00039 -28.21898 -26.25837 -24.57897 -23.72714 -23.15703 -22.69722 -21.51391 -21.23210 -20.30369 -19.30359 -18.80339 -17.86224 -17.06089 -16.60308 -16.32809 -16.27053 -15.82445 -15.70865 -15.41111 -15.07028 -14.99844 -14.88191 -14.68936 -14.22610 -14.12510 -13.91940 -13.71322 -13.50753 -13.41372 -13.24487 -12.89736 -12.69172 -12.52554 -12.37947 -12.18478 -12.12953 -11.94063 -11.80936 -11.62739 -11.55970 -11.41467 -11.27169 -11.18462 -10.92544 -10.32881 -9.96841 -9.20816 -8.84440 -8.64266 -6.34272 0.54823 0.83839 0.98122 1.26473 1.34938 1.47686 1.52958 1.93194 2.12617 2.62793 2.80539 3.36095 3.51205 3.63414 3.82450 3.86729 3.92550 4.12359 4.16185 4.20539 4.21823 4.33711 4.41095 4.43708 4.49461 4.54361 4.55558 4.63951 4.66781 4.78408 4.82158 4.86182 4.95253 4.98576 5.01022 5.09889 5.11376 5.13542 5.18386 5.25840 5.30105 5.45616 5.48326 5.55942 5.64239 5.80487 5.97043 6.10490 6.16111 6.37467 6.64709 6.73371 6.86324 7.00687 8.25051 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.010396 B = 0.004478 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2692.693552 B = 6251.135484 C = 8100.734005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.330 6.330 3 C 0.028 3.972 4 C -0.157 4.157 5 C -0.180 4.180 6 C 0.050 3.950 7 C -0.483 4.483 8 H 0.060 0.940 9 C 0.057 3.943 10 N -0.855 5.855 11 Si 0.951 3.049 12 H -0.266 1.266 13 H -0.280 1.280 14 H -0.257 1.257 15 C -0.201 4.201 16 C -0.008 4.008 17 C -0.198 4.198 18 C 0.067 3.933 19 N -0.320 5.320 20 N -0.364 5.364 21 C 0.160 3.840 22 C -0.131 4.131 23 C -0.109 4.109 24 C -0.122 4.122 25 C -0.109 4.109 26 C -0.124 4.124 27 C 0.061 3.939 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.112 0.888 31 H 0.139 0.861 32 H 0.111 0.889 33 H 0.290 0.710 34 H 0.099 0.901 35 H 0.188 0.812 36 H 0.103 0.897 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.062 0.938 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.620 -18.893 -5.031 19.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.245 6.245 3 C -0.017 4.017 4 C -0.175 4.175 5 C -0.199 4.199 6 C 0.047 3.953 7 C -0.513 4.513 8 H 0.078 0.922 9 C -0.157 4.157 10 N -0.483 5.483 11 Si 0.776 3.224 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.181 1.181 15 C -0.221 4.221 16 C -0.010 4.010 17 C -0.209 4.209 18 C -0.118 4.118 19 N -0.141 5.141 20 N -0.145 5.145 21 C 0.060 3.940 22 C -0.170 4.170 23 C -0.147 4.147 24 C -0.159 4.159 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.086 4.086 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.129 0.871 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.205 0.795 36 H 0.121 0.879 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.504 -20.135 -4.803 20.995 hybrid contribution -0.435 1.459 0.378 1.569 sum 3.070 -18.676 -4.425 19.437 Atomic orbital electron populations 1.23125 0.78229 1.04384 1.01314 1.85908 1.21728 1.26574 1.90287 1.18683 0.90706 0.84288 1.07974 1.20800 0.99713 0.91640 1.05362 1.20861 0.93812 0.96896 1.08363 1.17739 0.92765 0.92415 0.92355 1.19305 1.02217 0.95590 1.34191 0.92183 1.26524 0.95082 0.97021 0.97053 1.69750 1.10837 1.29851 1.37881 0.85694 0.79262 0.78526 0.78889 1.19220 1.20694 1.18081 1.20926 0.97767 0.91379 1.12023 1.17241 0.89511 0.90763 1.03495 1.18919 1.02112 0.97197 1.02684 1.23970 0.97530 0.90715 0.99618 1.77061 1.08530 1.23494 1.04992 1.48878 1.26990 1.13060 1.25619 1.21581 0.83349 0.94536 0.94539 1.21971 0.96011 0.97734 1.01264 1.21484 0.95975 0.99690 0.97505 1.21604 0.98867 0.98171 0.97269 1.21503 0.94539 0.97837 1.00792 1.21946 0.99366 0.99434 0.95470 1.22593 0.96275 0.89007 1.00683 0.92667 0.92946 0.86927 0.84312 0.87081 0.89966 0.88352 0.79496 0.87879 0.91145 0.92093 0.90627 0.90244 0.89771 0.91989 0.90698 0.90188 0.92172 0.91968 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.60 9.80 113.37 1.11 1.71 16 2 O -0.33 -11.65 9.37 -89.54 -0.84 -12.49 16 3 C 0.03 1.15 6.70 23.00 0.15 1.30 16 4 C -0.16 -6.19 8.95 22.06 0.20 -5.99 16 5 C -0.18 -8.18 9.72 22.50 0.22 -7.96 16 6 C 0.05 2.54 5.10 -21.30 -0.11 2.43 16 7 C -0.48 -27.21 9.55 23.40 0.22 -26.98 16 8 H 0.06 3.60 8.06 -2.91 -0.02 3.58 16 9 C 0.06 3.09 5.40 85.22 0.46 3.55 16 10 N -0.86 -47.69 13.93 21.81 0.30 -47.39 16 11 Si 0.95 44.96 24.51 68.60 1.68 46.64 16 12 H -0.27 -12.19 6.70 99.48 0.67 -11.52 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 14 H -0.26 -12.56 6.86 99.48 0.68 -11.87 16 15 C -0.20 -9.80 6.81 22.92 0.16 -9.65 16 16 C -0.01 -0.36 5.76 -19.97 -0.12 -0.48 16 17 C -0.20 -7.85 5.31 -20.33 -0.11 -7.96 16 18 C 0.07 2.47 11.28 85.50 0.96 3.43 16 19 N -0.32 -11.25 12.54 -56.45 -0.71 -11.96 16 20 N -0.36 -11.42 3.52 -326.64 -1.15 -12.57 16 21 C 0.16 3.64 3.19 44.99 0.14 3.79 16 22 C -0.13 -2.62 4.85 30.59 0.15 -2.48 16 23 C -0.11 -1.50 5.92 30.59 0.18 -1.31 16 24 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 25 C -0.11 -1.41 5.93 30.61 0.18 -1.23 16 26 C -0.12 -2.38 5.53 30.61 0.17 -2.21 16 27 C 0.06 2.15 10.46 83.80 0.88 3.03 16 28 H 0.05 1.26 7.65 -2.39 -0.02 1.24 16 29 H 0.05 1.22 7.64 -2.38 -0.02 1.20 16 30 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.14 4.41 6.26 -2.91 -0.02 4.39 16 32 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 33 H 0.29 14.65 8.30 -92.71 -0.77 13.88 16 34 H 0.10 4.88 4.73 -2.91 -0.01 4.87 16 35 H 0.19 6.25 8.06 -2.91 -0.02 6.23 16 36 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.07 1.47 7.15 -2.39 -0.02 1.46 16 38 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 47 H 0.18 5.72 7.26 -2.91 -0.02 5.70 16 Total: -1.00 -65.78 373.45 5.22 -60.56 By element: Atomic # 1 Polarization: 24.59 SS G_CDS: 0.90 Total: 25.48 kcal Atomic # 6 Polarization: -53.31 SS G_CDS: 5.04 Total: -48.28 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -1.55 Total: -71.91 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: -0.84 Total: -12.49 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.68 Total: 46.64 kcal Total: -65.78 5.22 -60.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241841089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.123 kcal (2) G-P(sol) polarization free energy of solvation -65.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds