Wall clock time and date at job start Tue Mar 31 2020 14:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31306 * 119.79857 * 2 1 4 4 C 1.33038 * 121.71296 * 180.02562 * 3 2 1 5 5 C 1.47896 * 119.45305 * 179.97438 * 4 3 2 6 6 C 1.41137 * 126.37676 * 179.66789 * 5 4 3 7 7 N 1.30533 * 108.10251 * 179.82039 * 6 5 4 8 8 N 1.39948 * 108.86153 * 0.44352 * 7 6 5 9 9 C 1.46498 * 125.80313 * 179.74594 * 8 7 6 10 10 C 1.53119 * 109.52819 * 214.83476 * 9 8 7 11 11 C 1.53035 * 109.27814 * 182.50469 * 10 9 8 12 12 N 1.46847 * 109.57733 * 59.08324 * 11 10 9 13 13 C 1.46897 * 111.00299 * 174.19468 * 12 11 10 14 14 C 1.46851 * 111.19686 * 298.29131 * 12 11 10 15 15 C 1.53040 * 109.52111 * 61.74242 * 14 12 11 16 16 C 1.34617 * 108.40021 * 359.71877 * 8 7 6 17 17 C 1.39962 * 121.08656 * 359.95613 * 4 3 2 18 18 C 1.36539 * 119.46798 * 0.02562 * 17 4 3 19 19 C 1.40906 * 119.79686 * 180.02562 * 2 1 3 20 20 C 1.41061 * 120.55045 * 0.24980 * 19 2 1 21 21 H 1.08000 * 120.00053 * 334.45512 * 20 19 2 22 22 C 1.39953 * 120.00091 * 154.46050 * 20 19 2 23 23 N 1.30839 * 119.99881 * 343.73618 * 22 20 19 24 24 Si 1.86804 * 119.99904 * 163.73519 * 22 20 19 25 25 H 1.48501 * 109.46780 * 89.99930 * 24 22 20 26 26 H 1.48499 * 109.47078 * 209.99545 * 24 22 20 27 27 H 1.48491 * 109.47049 * 329.99940 * 24 22 20 28 28 H 1.09002 * 109.46899 * 269.99938 * 1 2 3 29 29 H 1.08994 * 109.47144 * 29.99768 * 1 2 3 30 30 H 1.09009 * 109.47294 * 150.00227 * 1 2 3 31 31 H 1.07995 * 125.94830 * 359.96742 * 6 5 4 32 32 H 1.09001 * 109.52403 * 334.96767 * 9 8 7 33 33 H 1.09002 * 109.50432 * 302.38685 * 10 9 8 34 34 H 1.09003 * 109.49999 * 62.49693 * 10 9 8 35 35 H 1.08999 * 109.41540 * 299.07089 * 11 10 9 36 36 H 1.09004 * 109.46564 * 179.13335 * 11 10 9 37 37 H 1.09006 * 109.47286 * 184.21429 * 13 12 11 38 38 H 1.08997 * 109.46952 * 304.20794 * 13 12 11 39 39 H 1.08998 * 109.47268 * 64.21149 * 13 12 11 40 40 H 1.09000 * 109.46385 * 301.72335 * 14 12 11 41 41 H 1.08998 * 109.45878 * 181.75061 * 14 12 11 42 42 H 1.09000 * 109.49800 * 180.87616 * 15 14 12 43 43 H 1.08997 * 109.50746 * 60.76190 * 15 14 12 44 44 H 1.08001 * 126.30837 * 179.97438 * 16 8 7 45 45 H 1.08000 * 120.26054 * 179.97438 * 17 4 3 46 46 H 1.08007 * 120.78584 * 179.97438 * 18 17 4 47 47 H 0.97003 * 119.99804 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1595 1.1394 0.0000 4 6 3.4891 1.1839 -0.0005 5 6 4.1729 2.4953 -0.0011 6 6 5.5675 2.7121 0.0050 7 7 5.7777 4.0004 -0.0017 8 7 4.5435 4.6602 -0.0019 9 6 4.3478 6.1120 -0.0030 10 6 3.1058 6.4618 0.8214 11 6 2.8709 7.9729 0.7648 12 7 2.6889 8.3907 -0.6312 13 6 2.3248 9.8115 -0.7124 14 6 3.8879 8.1081 -1.4306 15 6 4.1522 6.6008 -1.4409 16 6 3.5666 3.7340 -0.0014 17 6 4.2515 0.0101 -0.0001 18 6 3.6203 -1.2007 0.0002 19 6 2.2072 -1.2228 -0.0005 20 6 1.5093 -2.4486 -0.0064 21 1 0.5073 -2.5015 0.3930 22 6 2.1154 -3.5965 -0.5296 23 7 3.1744 -3.4881 -1.2904 24 14 1.4126 -5.2832 -0.1418 25 1 0.4053 -5.6481 -1.1702 26 1 2.5066 -6.2874 -0.1424 27 1 0.7672 -5.2550 1.1952 28 1 -0.3633 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8901 -0.5138 31 1 6.3283 1.9457 0.0113 32 1 5.2218 6.5977 0.4310 33 1 2.2389 5.9440 0.4109 34 1 3.2576 6.1545 1.8561 35 1 3.7318 8.4896 1.1891 36 1 1.9784 8.2235 1.3382 37 1 2.1231 10.0762 -1.7504 38 1 1.4338 9.9931 -0.1115 39 1 3.1473 10.4194 -0.3356 40 1 4.7441 8.6241 -0.9960 41 1 3.7339 8.4568 -2.4518 42 1 5.0510 6.3930 -2.0214 43 1 3.3023 6.0853 -1.8880 44 1 2.5037 3.9256 -0.0010 45 1 5.3302 0.0617 -0.0010 46 1 4.1876 -2.1198 0.0001 47 1 3.5947 -4.2837 -1.6528 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242728098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:01 Heat of formation + Delta-G solvation = 79.645863 kcal Electronic energy + Delta-G solvation = -26831.890710 eV Core-core repulsion = 23207.521445 eV Total energy + Delta-G solvation = -3624.369265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.15422 -40.22581 -39.73062 -36.05532 -35.49737 -33.67629 -32.60115 -32.04813 -31.49284 -30.52837 -28.65514 -27.56416 -26.37322 -24.37670 -24.22635 -23.46064 -22.59563 -21.67422 -21.03221 -20.29426 -19.16643 -18.27686 -17.29734 -16.72561 -16.32664 -16.21008 -15.97353 -15.78262 -15.75689 -15.47095 -15.18408 -14.86122 -14.40854 -14.29856 -14.15517 -13.65150 -13.52009 -13.49339 -13.43539 -13.24987 -13.17336 -12.92153 -12.72925 -12.59098 -12.56977 -12.30932 -12.26095 -12.19316 -11.92843 -11.76299 -11.62785 -11.40786 -11.17410 -10.29947 -10.17081 -9.89916 -9.84633 -9.31586 -8.78307 -8.54873 -6.27430 0.54844 1.04010 1.15179 1.41244 1.46450 1.54762 1.56115 2.07523 2.21224 2.88273 2.92468 3.37807 3.64703 3.80920 3.83800 3.89493 3.93546 4.04023 4.07429 4.23792 4.27294 4.45054 4.50492 4.51858 4.56040 4.66098 4.68814 4.74786 4.77189 4.80245 4.87529 4.91766 4.93591 5.02811 5.04425 5.06869 5.11626 5.16854 5.21252 5.27138 5.38593 5.58221 5.64625 5.94578 6.03082 6.05467 6.07719 6.12124 6.19450 6.56880 6.78461 6.81910 6.89244 7.82585 8.28297 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002413 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.143089 B =11602.367535 C =12303.276320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.012 4.012 3 N -0.472 5.472 4 C 0.057 3.943 5 C -0.178 4.178 6 C 0.052 3.948 7 N -0.321 5.321 8 N -0.361 5.361 9 C 0.161 3.839 10 C -0.123 4.123 11 C 0.067 3.933 12 N -0.562 5.562 13 C 0.026 3.974 14 C 0.067 3.933 15 C -0.122 4.122 16 C 0.073 3.927 17 C -0.144 4.144 18 C -0.154 4.154 19 C 0.035 3.965 20 C -0.467 4.467 21 H 0.091 0.909 22 C 0.033 3.967 23 N -0.819 5.819 24 Si 0.985 3.015 25 H -0.261 1.261 26 H -0.269 1.269 27 H -0.256 1.256 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.195 0.805 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.096 0.904 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.180 0.820 45 H 0.120 0.880 46 H 0.113 0.887 47 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 19.336 1.829 19.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.155 4.155 3 N -0.181 5.181 4 C -0.080 4.080 5 C -0.190 4.190 6 C -0.134 4.134 7 N -0.142 5.142 8 N -0.143 5.143 9 C 0.060 3.940 10 C -0.162 4.162 11 C -0.062 4.062 12 N -0.287 5.287 13 C -0.121 4.121 14 C -0.062 4.062 15 C -0.161 4.161 16 C -0.075 4.075 17 C -0.165 4.165 18 C -0.180 4.180 19 C 0.031 3.969 20 C -0.496 4.496 21 H 0.109 0.891 22 C -0.183 4.183 23 N -0.445 5.445 24 Si 0.805 3.195 25 H -0.185 1.185 26 H -0.194 1.194 27 H -0.179 1.179 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.212 0.788 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.114 0.886 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.065 0.935 41 H 0.109 0.891 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.197 0.803 45 H 0.138 0.862 46 H 0.131 0.869 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 0.501 20.787 1.481 20.846 hybrid contribution 0.599 -2.186 0.209 2.276 sum 1.099 18.601 1.690 18.710 Atomic orbital electron populations 1.20223 0.88934 1.01608 1.01263 1.21513 0.96806 0.87872 1.09315 1.66856 1.09112 1.30246 1.11869 1.18541 0.88555 0.90736 1.10175 1.18988 0.92625 0.91481 1.15950 1.24079 0.95678 0.93727 0.99953 1.76937 1.04376 1.06693 1.26163 1.48659 1.02973 1.06522 1.56101 1.21547 1.00442 0.73950 0.98055 1.21972 0.96326 0.97821 1.00084 1.22014 1.02043 0.92873 0.89248 1.61916 1.35610 1.20338 1.10811 1.22382 1.00739 0.85815 1.03189 1.22003 0.91210 0.93561 0.99395 1.21979 1.02290 0.97037 0.94776 1.22757 0.95673 0.87993 1.01067 1.21417 0.99731 0.92925 1.02401 1.21326 0.95034 0.96862 1.04774 1.18717 0.93000 0.94270 0.90948 1.19791 1.02198 0.92783 1.34860 0.89110 1.26876 0.94402 1.05267 0.91782 1.69864 1.18700 1.33555 1.22349 0.85155 0.78822 0.75425 0.80100 1.18537 1.19359 1.17943 0.92039 0.92134 0.91572 0.78807 0.87958 0.90740 0.90268 0.93472 0.88583 0.90719 0.90505 0.94845 0.93473 0.89052 0.91103 0.91743 0.80314 0.86173 0.86897 0.89869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.61 9.58 71.24 0.68 -1.93 16 2 C -0.01 -0.62 6.86 43.29 0.30 -0.32 16 3 N -0.47 -23.36 9.96 -170.98 -1.70 -25.06 16 4 C 0.06 2.73 6.76 41.94 0.28 3.02 16 5 C -0.18 -7.27 6.10 -20.08 -0.12 -7.39 16 6 C 0.05 1.86 11.40 85.60 0.98 2.84 16 7 N -0.32 -11.06 12.51 -56.34 -0.70 -11.77 16 8 N -0.36 -11.14 3.51 -325.20 -1.14 -12.28 16 9 C 0.16 3.59 3.25 45.07 0.15 3.74 16 10 C -0.12 -2.32 5.07 30.65 0.16 -2.17 16 11 C 0.07 0.94 5.46 86.33 0.47 1.41 16 12 N -0.56 -8.48 4.91 -922.58 -4.53 -13.01 16 13 C 0.03 0.28 9.59 127.69 1.22 1.50 16 14 C 0.07 1.00 5.46 86.33 0.47 1.47 16 15 C -0.12 -2.47 5.70 30.65 0.17 -2.30 16 16 C 0.07 2.59 10.35 84.19 0.87 3.46 16 17 C -0.14 -6.97 9.54 22.29 0.21 -6.75 16 18 C -0.15 -8.17 8.72 22.63 0.20 -7.98 16 19 C 0.04 1.88 5.58 -21.17 -0.12 1.76 16 20 C -0.47 -23.97 8.13 23.38 0.19 -23.78 16 21 H 0.09 4.37 6.86 -2.91 -0.02 4.35 16 22 C 0.03 1.58 5.18 85.26 0.44 2.02 16 23 N -0.82 -41.59 10.95 21.83 0.24 -41.35 16 24 Si 0.98 36.45 29.59 68.60 2.03 38.48 16 25 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 26 H -0.27 -9.59 7.11 99.48 0.71 -8.88 16 27 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 28 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 29 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.71 6.75 -2.38 -0.02 2.70 16 31 H 0.20 6.09 7.31 -2.91 -0.02 6.07 16 32 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.07 1.60 7.02 -2.39 -0.02 1.58 16 34 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.10 1.15 8.09 -2.39 -0.02 1.13 16 37 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 39 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 1.20 8.12 -2.39 -0.02 1.18 16 42 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.18 6.01 7.18 -2.91 -0.02 5.99 16 45 H 0.12 5.03 7.00 -2.91 -0.02 5.01 16 46 H 0.11 6.11 6.27 -2.91 -0.02 6.09 16 47 H 0.29 13.30 8.30 -92.71 -0.77 12.53 16 Total: -1.00 -63.41 377.91 1.71 -61.70 By element: Atomic # 1 Polarization: 33.73 SS G_CDS: 0.97 Total: 34.70 kcal Atomic # 6 Polarization: -37.96 SS G_CDS: 6.56 Total: -31.40 kcal Atomic # 7 Polarization: -95.63 SS G_CDS: -7.84 Total: -103.47 kcal Atomic # 14 Polarization: 36.45 SS G_CDS: 2.03 Total: 38.48 kcal Total: -63.41 1.71 -61.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242728098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.342 kcal (2) G-P(sol) polarization free energy of solvation -63.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds