Wall clock time and date at job start Tue Mar 31 2020 14:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38841 * 119.24183 * 2 1 4 4 C 1.36906 * 119.80704 * 180.02562 * 3 2 1 5 5 C 1.41076 * 118.40733 * 0.02562 * 4 3 2 6 6 C 1.40885 * 120.71922 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00111 * 153.98467 * 6 5 4 8 8 C 1.40016 * 119.99774 * 333.98073 * 6 5 4 9 9 N 1.30813 * 120.00178 * 334.70137 * 8 6 5 10 10 Si 1.86802 * 119.99628 * 154.69895 * 8 6 5 11 11 H 1.48493 * 109.47209 * 270.00128 * 10 8 6 12 12 H 1.48503 * 109.46874 * 30.00654 * 10 8 6 13 13 H 1.48501 * 109.46723 * 150.00061 * 10 8 6 14 14 C 1.41924 * 118.56183 * 0.24501 * 5 4 3 15 15 C 1.47740 * 119.99887 * 179.74690 * 14 5 4 16 16 C 1.41201 * 126.39291 * 325.03304 * 15 14 5 17 17 N 1.30513 * 108.09127 * 179.97438 * 16 15 14 18 18 N 1.39940 * 108.89106 * 359.97438 * 17 16 15 19 19 C 1.46504 * 125.79268 * 180.02562 * 18 17 16 20 20 C 1.53119 * 109.52186 * 214.66044 * 19 18 17 21 21 C 1.53043 * 109.27447 * 182.43895 * 20 19 18 22 22 N 1.46840 * 109.52363 * 59.17967 * 21 20 19 23 23 C 1.46897 * 110.99993 * 174.15895 * 22 21 20 24 24 C 1.46847 * 111.20157 * 298.25528 * 22 21 20 25 25 C 1.53044 * 109.52026 * 61.74393 * 24 22 21 26 26 C 1.34587 * 108.41863 * 359.73253 * 18 17 16 27 27 N 1.31773 * 119.24923 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46990 * 90.00156 * 1 2 3 29 29 H 1.09003 * 109.46866 * 209.99864 * 1 2 3 30 30 H 1.08996 * 109.47096 * 329.99868 * 1 2 3 31 31 H 1.07991 * 120.09511 * 0.04662 * 3 2 1 32 32 H 1.08001 * 120.79279 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99988 * 354.07289 * 9 8 6 34 34 H 1.07993 * 125.95368 * 0.02562 * 16 15 14 35 35 H 1.08994 * 109.51988 * 334.84783 * 19 18 17 36 36 H 1.09003 * 109.50528 * 302.37714 * 20 19 18 37 37 H 1.08999 * 109.50248 * 62.49795 * 20 19 18 38 38 H 1.08997 * 109.46154 * 299.16388 * 21 20 19 39 39 H 1.09006 * 109.45916 * 179.19713 * 21 20 19 40 40 H 1.09003 * 109.47255 * 184.21251 * 23 22 21 41 41 H 1.09006 * 109.47253 * 304.21103 * 23 22 21 42 42 H 1.08995 * 109.47317 * 64.21008 * 23 22 21 43 43 H 1.09000 * 109.45931 * 301.72889 * 24 22 21 44 44 H 1.08999 * 109.46427 * 181.75418 * 24 22 21 45 45 H 1.08993 * 109.50327 * 180.88622 * 25 24 22 46 46 H 1.08997 * 109.50776 * 60.75963 * 25 24 22 47 47 H 1.08007 * 126.31218 * 180.26835 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2115 0.0000 4 6 3.5542 1.2250 -0.0005 5 6 4.2376 -0.0092 -0.0016 6 6 5.6458 -0.0522 -0.0027 7 1 6.1602 -0.9089 0.4067 8 6 6.3783 1.0159 -0.5348 9 7 5.8409 1.7899 -1.4422 10 14 8.1229 1.3356 0.0513 11 1 8.0932 2.2594 1.2136 12 1 8.7525 0.0526 0.4545 13 1 8.9099 1.9490 -1.0485 14 6 3.4757 -1.2066 -0.0074 15 6 4.1587 -2.5167 -0.0144 16 6 5.3717 -2.8256 -0.6679 17 7 5.6471 -4.0806 -0.4390 18 7 4.6378 -4.6274 0.3613 19 6 4.5784 -6.0109 0.8394 20 6 3.1193 -6.4723 0.8909 21 6 3.0591 -7.8964 1.4483 22 7 3.6470 -7.9220 2.7936 23 6 3.4819 -9.2427 3.4152 24 6 5.0613 -7.5281 2.7627 25 6 5.1813 -6.0931 2.2446 26 6 3.7341 -3.6649 0.6227 27 7 2.1508 -1.1497 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6345 2.1404 0.0008 32 1 4.0979 2.1582 -0.0010 33 1 4.9692 1.5744 -1.8090 34 1 5.9681 -2.1422 -1.2540 35 1 5.1412 -6.6544 0.1633 36 1 2.5489 -5.8044 1.5364 37 1 2.6970 -6.4567 -0.1139 38 1 3.6181 -8.5661 0.7949 39 1 2.0203 -8.2226 1.4996 40 1 3.8588 -9.2128 4.4376 41 1 2.4251 -9.5100 3.4253 42 1 4.0390 -9.9853 2.8442 43 1 5.6109 -8.1996 2.1031 44 1 5.4768 -7.5868 3.7687 45 1 6.2322 -5.8065 2.2068 46 1 4.6434 -5.4192 2.9113 47 1 2.8397 -3.7721 1.2186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242728234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:06 Heat of formation + Delta-G solvation = 92.538956 kcal Electronic energy + Delta-G solvation = -27470.047625 eV Core-core repulsion = 23846.237446 eV Total energy + Delta-G solvation = -3623.810179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.65956 -39.02635 -38.34866 -34.68781 -34.41997 -31.88047 -31.20725 -30.65313 -30.20345 -28.67875 -27.63927 -26.25818 -24.24776 -23.47327 -23.28080 -22.00878 -20.94571 -20.41591 -19.66580 -19.04114 -18.01547 -16.85307 -15.80480 -15.42865 -15.10232 -14.88800 -14.68342 -14.53832 -14.26804 -14.10050 -13.85336 -13.42791 -13.24426 -13.07210 -12.75097 -12.73677 -12.57411 -12.22000 -11.98344 -11.88463 -11.65378 -11.50689 -11.45140 -11.38955 -11.18672 -11.08654 -10.89358 -10.81497 -10.74440 -10.46077 -10.03041 -9.64964 -9.21769 -8.72575 -8.65999 -8.63688 -8.11398 -7.99231 -7.35503 -7.00755 -4.47207 2.27175 2.68481 2.81096 2.94182 3.13584 3.24054 3.32344 3.59829 3.77838 3.94752 4.40615 4.53013 4.56461 4.75015 4.82562 4.99603 5.08111 5.14134 5.17868 5.28158 5.34420 5.42975 5.51421 5.54749 5.55422 5.64101 5.67983 5.69715 5.83397 5.98033 6.00497 6.11713 6.18853 6.37807 6.40284 6.42847 6.50784 6.57848 6.71700 6.74115 6.83887 7.00650 7.12855 7.35655 7.53565 7.59519 7.67146 7.75961 7.91786 8.08730 8.44698 8.58069 8.70760 9.58740 9.92673 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.003578 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.426737 B = 7822.704293 C = 9534.790753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.025 4.025 3 C -0.128 4.128 4 C -0.187 4.187 5 C 0.064 3.936 6 C -0.497 4.497 7 H 0.089 0.911 8 C 0.038 3.962 9 N -0.788 5.788 10 Si 1.064 2.936 11 H -0.274 1.274 12 H -0.273 1.273 13 H -0.276 1.276 14 C 0.070 3.930 15 C -0.130 4.130 16 C 0.078 3.922 17 N -0.321 5.321 18 N -0.377 5.377 19 C 0.170 3.830 20 C -0.128 4.128 21 C 0.062 3.938 22 N -0.546 5.546 23 C 0.026 3.974 24 C 0.060 3.940 25 C -0.129 4.129 26 C 0.052 3.948 27 N -0.450 5.450 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.300 0.700 34 H 0.189 0.811 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.025 0.975 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.170 -15.099 5.931 16.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.164 4.164 3 C -0.148 4.148 4 C -0.213 4.213 5 C 0.059 3.941 6 C -0.525 4.525 7 H 0.107 0.893 8 C -0.185 4.185 9 N -0.411 5.411 10 Si 0.887 3.113 11 H -0.200 1.200 12 H -0.198 1.198 13 H -0.201 1.201 14 C -0.072 4.072 15 C -0.142 4.142 16 C -0.109 4.109 17 N -0.141 5.141 18 N -0.159 5.159 19 C 0.068 3.932 20 C -0.166 4.166 21 C -0.067 4.067 22 N -0.271 5.271 23 C -0.122 4.122 24 C -0.068 4.068 25 C -0.168 4.168 26 C -0.094 4.094 27 N -0.158 5.158 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.114 0.886 34 H 0.205 0.795 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.043 0.957 43 H 0.055 0.945 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.098 0.902 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.848 -15.507 5.835 16.590 hybrid contribution -1.064 0.067 -0.152 1.077 sum -1.912 -15.440 5.683 16.563 Atomic orbital electron populations 1.20244 0.91613 1.00689 1.00332 1.20143 0.94762 0.88427 1.13031 1.21126 0.95042 0.97212 1.01426 1.21188 0.93434 0.97864 1.08765 1.18338 0.94256 0.90989 0.90545 1.20622 0.91381 1.05859 1.34652 0.89337 1.27090 1.06731 0.91560 0.93077 1.70431 1.18982 1.34974 1.16666 0.83639 0.72986 0.77489 0.77163 1.19959 1.19773 1.20062 1.18712 0.87583 0.90084 1.10796 1.18682 0.97368 0.92644 1.05506 1.24183 0.96164 0.91936 0.98583 1.77012 1.11593 1.11088 1.14450 1.48221 1.18256 1.08555 1.40847 1.21073 0.97319 0.79433 0.95414 1.21990 0.95368 0.96914 1.02376 1.22039 1.00258 0.95893 0.88497 1.61932 1.16420 1.28042 1.20658 1.22345 1.01888 0.88582 0.99429 1.22063 0.88040 0.95476 1.01219 1.22060 1.02151 0.96900 0.95646 1.22637 0.95993 0.88623 1.02117 1.66833 1.09798 1.29200 1.10011 0.93352 0.92717 0.93077 0.88438 0.86956 0.88644 0.79461 0.88983 0.89760 0.90278 0.94521 0.89910 0.91229 0.91245 0.95660 0.94536 0.90095 0.90418 0.90223 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.28 10.15 36.00 0.37 -0.92 16 2 C -0.02 -0.56 6.79 -82.39 -0.56 -1.12 16 3 C -0.13 -2.92 9.64 -39.84 -0.38 -3.31 16 4 C -0.19 -4.66 8.01 -38.99 -0.31 -4.97 16 5 C 0.06 1.64 5.31 -106.41 -0.56 1.07 16 6 C -0.50 -12.40 7.02 -37.91 -0.27 -12.66 16 7 H 0.09 2.20 6.09 -52.49 -0.32 1.88 16 8 C 0.04 0.92 4.97 -17.32 -0.09 0.84 16 9 N -0.79 -19.90 12.36 55.55 0.69 -19.22 16 10 Si 1.06 20.87 30.00 -169.99 -5.10 15.77 16 11 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 12 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 13 H -0.28 -5.35 7.11 56.52 0.40 -4.95 16 14 C 0.07 1.75 6.74 -82.24 -0.55 1.19 16 15 C -0.13 -2.93 5.58 -104.97 -0.59 -3.52 16 16 C 0.08 1.69 9.87 -16.99 -0.17 1.52 16 17 N -0.32 -6.48 12.50 30.85 0.39 -6.09 16 18 N -0.38 -6.62 3.51 -54.12 -0.19 -6.81 16 19 C 0.17 2.25 3.26 -67.80 -0.22 2.02 16 20 C -0.13 -1.43 5.06 -26.65 -0.13 -1.56 16 21 C 0.06 0.56 5.46 -3.83 -0.02 0.54 16 22 N -0.55 -5.16 4.91 -242.96 -1.19 -6.35 16 23 C 0.03 0.19 9.59 60.06 0.58 0.76 16 24 C 0.06 0.57 5.46 -3.83 -0.02 0.55 16 25 C -0.13 -1.53 5.70 -26.65 -0.15 -1.68 16 26 C 0.05 1.01 10.55 -16.43 -0.17 0.84 16 27 N -0.45 -10.94 10.15 -5.45 -0.06 -10.99 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 31 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.11 2.83 6.64 -52.49 -0.35 2.48 16 33 H 0.30 7.83 6.72 -40.82 -0.27 7.55 16 34 H 0.19 4.09 6.85 -52.49 -0.36 3.73 16 35 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.02 7.02 -51.93 -0.36 0.65 16 37 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.45 8.09 -51.93 -0.42 0.03 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.08 0.69 8.12 -51.93 -0.42 0.27 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.17 2.93 7.18 -52.48 -0.38 2.55 16 LS Contribution 376.26 15.07 5.67 5.67 Total: -1.00 -28.56 376.26 -10.23 -38.78 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -7.17 Total: 9.66 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -3.26 Total: -20.41 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: -0.37 Total: -49.46 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.10 Total: 15.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -28.56 -10.23 -38.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242728234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.323 kcal (2) G-P(sol) polarization free energy of solvation -28.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds