Wall clock time and date at job start Tue Mar 31 2020 14:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38841 * 119.24183 * 2 1 4 4 C 1.36906 * 119.80704 * 180.02562 * 3 2 1 5 5 C 1.41076 * 118.40733 * 0.02562 * 4 3 2 6 6 C 1.40885 * 120.71922 * 179.97438 * 5 4 3 7 7 H 1.08000 * 120.00111 * 153.98467 * 6 5 4 8 8 C 1.40016 * 119.99774 * 333.98073 * 6 5 4 9 9 N 1.30813 * 120.00178 * 334.70137 * 8 6 5 10 10 Si 1.86802 * 119.99628 * 154.69895 * 8 6 5 11 11 H 1.48493 * 109.47209 * 270.00128 * 10 8 6 12 12 H 1.48503 * 109.46874 * 30.00654 * 10 8 6 13 13 H 1.48501 * 109.46723 * 150.00061 * 10 8 6 14 14 C 1.41924 * 118.56183 * 0.24501 * 5 4 3 15 15 C 1.47740 * 119.99887 * 179.74690 * 14 5 4 16 16 C 1.41201 * 126.39291 * 325.03304 * 15 14 5 17 17 N 1.30513 * 108.09127 * 179.97438 * 16 15 14 18 18 N 1.39940 * 108.89106 * 359.97438 * 17 16 15 19 19 C 1.46504 * 125.79268 * 180.02562 * 18 17 16 20 20 C 1.53119 * 109.52186 * 214.66044 * 19 18 17 21 21 C 1.53043 * 109.27447 * 182.43895 * 20 19 18 22 22 N 1.46840 * 109.52363 * 59.17967 * 21 20 19 23 23 C 1.46897 * 110.99993 * 174.15895 * 22 21 20 24 24 C 1.46847 * 111.20157 * 298.25528 * 22 21 20 25 25 C 1.53044 * 109.52026 * 61.74393 * 24 22 21 26 26 C 1.34587 * 108.41863 * 359.73253 * 18 17 16 27 27 N 1.31773 * 119.24923 * 180.02562 * 2 1 3 28 28 H 1.08996 * 109.46990 * 90.00156 * 1 2 3 29 29 H 1.09003 * 109.46866 * 209.99864 * 1 2 3 30 30 H 1.08996 * 109.47096 * 329.99868 * 1 2 3 31 31 H 1.07991 * 120.09511 * 0.04662 * 3 2 1 32 32 H 1.08001 * 120.79279 * 179.97438 * 4 3 2 33 33 H 0.96996 * 119.99988 * 354.07289 * 9 8 6 34 34 H 1.07993 * 125.95368 * 0.02562 * 16 15 14 35 35 H 1.08994 * 109.51988 * 334.84783 * 19 18 17 36 36 H 1.09003 * 109.50528 * 302.37714 * 20 19 18 37 37 H 1.08999 * 109.50248 * 62.49795 * 20 19 18 38 38 H 1.08997 * 109.46154 * 299.16388 * 21 20 19 39 39 H 1.09006 * 109.45916 * 179.19713 * 21 20 19 40 40 H 1.09003 * 109.47255 * 184.21251 * 23 22 21 41 41 H 1.09006 * 109.47253 * 304.21103 * 23 22 21 42 42 H 1.08995 * 109.47317 * 64.21008 * 23 22 21 43 43 H 1.09000 * 109.45931 * 301.72889 * 24 22 21 44 44 H 1.08999 * 109.46427 * 181.75418 * 24 22 21 45 45 H 1.08993 * 109.50327 * 180.88622 * 25 24 22 46 46 H 1.08997 * 109.50776 * 60.75963 * 25 24 22 47 47 H 1.08007 * 126.31218 * 180.26835 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2115 0.0000 4 6 3.5542 1.2250 -0.0005 5 6 4.2376 -0.0092 -0.0016 6 6 5.6458 -0.0522 -0.0027 7 1 6.1602 -0.9089 0.4067 8 6 6.3783 1.0159 -0.5348 9 7 5.8409 1.7899 -1.4422 10 14 8.1229 1.3356 0.0513 11 1 8.0932 2.2594 1.2136 12 1 8.7525 0.0526 0.4545 13 1 8.9099 1.9490 -1.0485 14 6 3.4757 -1.2066 -0.0074 15 6 4.1587 -2.5167 -0.0144 16 6 5.3717 -2.8256 -0.6679 17 7 5.6471 -4.0806 -0.4390 18 7 4.6378 -4.6274 0.3613 19 6 4.5784 -6.0109 0.8394 20 6 3.1193 -6.4723 0.8909 21 6 3.0591 -7.8964 1.4483 22 7 3.6470 -7.9220 2.7936 23 6 3.4819 -9.2427 3.4152 24 6 5.0613 -7.5281 2.7627 25 6 5.1813 -6.0931 2.2446 26 6 3.7341 -3.6649 0.6227 27 7 2.1508 -1.1497 -0.0005 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8899 0.5138 31 1 1.6345 2.1404 0.0008 32 1 4.0979 2.1582 -0.0010 33 1 4.9692 1.5744 -1.8090 34 1 5.9681 -2.1422 -1.2540 35 1 5.1412 -6.6544 0.1633 36 1 2.5489 -5.8044 1.5364 37 1 2.6970 -6.4567 -0.1139 38 1 3.6181 -8.5661 0.7949 39 1 2.0203 -8.2226 1.4996 40 1 3.8588 -9.2128 4.4376 41 1 2.4251 -9.5100 3.4253 42 1 4.0390 -9.9853 2.8442 43 1 5.6109 -8.1996 2.1031 44 1 5.4768 -7.5868 3.7687 45 1 6.2322 -5.8065 2.2068 46 1 4.6434 -5.4192 2.9113 47 1 2.8397 -3.7721 1.2186 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242728234.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:05 Heat of formation + Delta-G solvation = 76.462678 kcal Electronic energy + Delta-G solvation = -27470.744744 eV Core-core repulsion = 23846.237446 eV Total energy + Delta-G solvation = -3624.507298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.180 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.15906 -40.36774 -39.74114 -36.42592 -35.57977 -33.55063 -32.49483 -32.06122 -31.50150 -30.27256 -29.29968 -27.21859 -25.95280 -24.59248 -24.26610 -23.49501 -22.65940 -21.69247 -21.24421 -20.31859 -19.85427 -18.20413 -16.99728 -16.66770 -16.37150 -16.20522 -15.92927 -15.82752 -15.59232 -15.57806 -15.34176 -15.00870 -14.46547 -14.32198 -14.23681 -13.97620 -13.63926 -13.50042 -13.36658 -13.29652 -13.07657 -12.88941 -12.73657 -12.60820 -12.48722 -12.30482 -12.27301 -12.00132 -11.90983 -11.77012 -11.55797 -11.40058 -11.02318 -10.45881 -10.25669 -9.98219 -9.79345 -9.33233 -9.22754 -8.76802 -6.37386 0.51717 0.89791 1.07994 1.51521 1.57119 1.64344 1.79042 2.03781 2.30709 2.70586 2.91310 3.37848 3.58394 3.64129 3.82993 3.90215 3.95163 4.02875 4.08267 4.22391 4.26207 4.31111 4.46505 4.50003 4.51869 4.57589 4.66762 4.68926 4.76730 4.80042 4.85191 4.86728 4.92119 4.95734 4.97789 5.02036 5.05945 5.13013 5.20727 5.26194 5.29525 5.58013 5.74443 5.75809 5.84103 6.03300 6.03684 6.06828 6.19412 6.24521 6.70896 6.83138 6.83822 7.72338 8.00372 Molecular weight = 326.18amu Principal moments of inertia in cm(-1) A = 0.012556 B = 0.003578 C = 0.002936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2229.426737 B = 7822.704293 C = 9534.790753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.028 4.028 3 C -0.135 4.135 4 C -0.203 4.203 5 C 0.036 3.964 6 C -0.514 4.514 7 H 0.082 0.918 8 C 0.009 3.991 9 N -0.808 5.808 10 Si 1.111 2.889 11 H -0.265 1.265 12 H -0.263 1.263 13 H -0.270 1.270 14 C 0.060 3.940 15 C -0.169 4.169 16 C 0.066 3.934 17 N -0.327 5.327 18 N -0.361 5.361 19 C 0.160 3.840 20 C -0.121 4.121 21 C 0.067 3.933 22 N -0.561 5.561 23 C 0.026 3.974 24 C 0.067 3.933 25 C -0.122 4.122 26 C 0.072 3.928 27 N -0.465 5.465 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.127 0.873 32 H 0.101 0.899 33 H 0.284 0.716 34 H 0.176 0.824 35 H 0.100 0.900 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.033 0.967 43 H 0.046 0.954 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.095 -17.099 7.127 18.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.167 4.167 3 C -0.155 4.155 4 C -0.229 4.229 5 C 0.031 3.969 6 C -0.543 4.543 7 H 0.100 0.900 8 C -0.209 4.209 9 N -0.431 5.431 10 Si 0.929 3.071 11 H -0.190 1.190 12 H -0.187 1.187 13 H -0.195 1.195 14 C -0.081 4.081 15 C -0.181 4.181 16 C -0.119 4.119 17 N -0.148 5.148 18 N -0.142 5.142 19 C 0.060 3.940 20 C -0.160 4.160 21 C -0.062 4.062 22 N -0.286 5.286 23 C -0.121 4.121 24 C -0.061 4.061 25 C -0.161 4.161 26 C -0.076 4.076 27 N -0.174 5.174 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.095 0.905 31 H 0.145 0.855 32 H 0.119 0.881 33 H 0.096 0.904 34 H 0.193 0.807 35 H 0.118 0.882 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.096 0.904 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.084 0.916 47 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.777 -17.545 7.034 18.986 hybrid contribution -0.940 0.541 -0.483 1.188 sum -2.718 -17.004 6.551 18.424 Atomic orbital electron populations 1.20318 0.87975 1.02407 1.01738 1.21016 0.97249 0.87912 1.10490 1.21459 0.94444 0.98808 1.00796 1.21238 0.94561 0.97273 1.09806 1.18660 0.95016 0.91758 0.91496 1.20636 0.91467 1.06381 1.35775 0.90035 1.28308 1.09592 0.90850 0.92144 1.70540 1.18524 1.35920 1.18098 0.83055 0.69016 0.77954 0.77073 1.18974 1.18695 1.19487 1.19094 0.88086 0.90932 1.10026 1.18778 0.98370 0.93025 1.07942 1.23981 0.96224 0.92451 0.99256 1.76948 1.12429 1.10435 1.15029 1.48635 1.16750 1.09790 1.39021 1.21560 0.99306 0.76949 0.96226 1.21963 0.93347 0.98321 1.02381 1.22020 1.01414 0.94187 0.88532 1.61923 1.16152 1.29653 1.20875 1.22390 1.02682 0.87460 0.99611 1.21998 0.88611 0.93572 1.01928 1.21981 1.01107 0.98654 0.94332 1.22763 0.96153 0.87943 1.00757 1.66967 1.09521 1.29977 1.10901 0.91962 0.91933 0.90469 0.85528 0.88121 0.90378 0.80694 0.88223 0.90608 0.90385 0.93556 0.88384 0.90664 0.90389 0.94888 0.93565 0.88938 0.91358 0.91626 0.80065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.24 10.15 71.24 0.72 -1.51 16 2 C -0.03 -1.23 6.79 42.71 0.29 -0.94 16 3 C -0.14 -6.16 9.64 22.10 0.21 -5.95 16 4 C -0.20 -10.45 8.01 22.65 0.18 -10.26 16 5 C 0.04 1.90 5.31 -21.02 -0.11 1.79 16 6 C -0.51 -26.83 7.02 23.35 0.16 -26.66 16 7 H 0.08 4.26 6.09 -2.91 -0.02 4.24 16 8 C 0.01 0.43 4.97 85.28 0.42 0.85 16 9 N -0.81 -42.45 12.36 21.84 0.27 -42.18 16 10 Si 1.11 42.83 30.00 68.60 2.06 44.89 16 11 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 12 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 13 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 14 C 0.06 3.06 6.74 42.45 0.29 3.35 16 15 C -0.17 -7.82 5.58 -20.09 -0.11 -7.94 16 16 C 0.07 2.99 9.87 85.62 0.85 3.84 16 17 N -0.33 -13.34 12.50 -56.31 -0.70 -14.05 16 18 N -0.36 -12.52 3.51 -325.14 -1.14 -13.66 16 19 C 0.16 4.00 3.26 45.07 0.15 4.15 16 20 C -0.12 -2.48 5.06 30.65 0.16 -2.33 16 21 C 0.07 1.02 5.46 86.33 0.47 1.49 16 22 N -0.56 -9.01 4.91 -922.58 -4.53 -13.54 16 23 C 0.03 0.29 9.59 127.69 1.22 1.52 16 24 C 0.07 1.11 5.46 86.33 0.47 1.58 16 25 C -0.12 -2.74 5.70 30.65 0.17 -2.56 16 26 C 0.07 2.79 10.55 84.22 0.89 3.68 16 27 N -0.46 -22.64 10.15 -171.15 -1.74 -24.38 16 28 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.18 8.07 -2.39 -0.02 2.16 16 31 H 0.13 4.90 8.06 -2.92 -0.02 4.88 16 32 H 0.10 5.30 6.64 -2.91 -0.02 5.28 16 33 H 0.28 15.63 6.72 -92.71 -0.62 15.01 16 34 H 0.18 8.16 6.85 -2.91 -0.02 8.14 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.08 1.70 7.02 -2.39 -0.02 1.68 16 37 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 38 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.10 1.24 8.09 -2.38 -0.02 1.22 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.08 0.75 8.09 -2.38 -0.02 0.73 16 42 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.18 6.31 7.18 -2.91 -0.02 6.29 16 Total: -1.00 -63.49 376.26 1.76 -61.73 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 1.11 Total: 37.11 kcal Atomic # 6 Polarization: -42.35 SS G_CDS: 6.44 Total: -35.91 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -7.84 Total: -107.81 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.06 Total: 44.89 kcal Total: -63.49 1.76 -61.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242728234.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.195 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds