Wall clock time and date at job start Tue Mar 31 2020 14:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00054 * 2 1 4 4 C 1.46901 * 111.00390 * 123.95571 * 2 1 3 5 5 C 1.52996 * 109.47379 * 169.99719 * 4 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 2 7 7 O 1.42905 * 109.47264 * 180.02562 * 6 5 4 8 8 C 1.35823 * 117.00214 * 180.02562 * 7 6 5 9 9 C 1.38886 * 119.93149 * 359.72143 * 8 7 6 10 10 C 1.37848 * 120.07108 * 179.76775 * 9 8 7 11 11 C 1.39461 * 119.92950 * 0.51077 * 10 9 8 12 12 C 1.48226 * 120.07292 * 179.72352 * 11 10 9 13 13 C 1.39963 * 119.60568 * 0.02562 * 12 11 10 14 14 C 1.38662 * 119.45601 * 179.97438 * 13 12 11 15 15 C 1.38308 * 118.69876 * 0.02562 * 14 13 12 16 16 C 1.40675 * 119.19736 * 0.02562 * 15 14 13 17 17 C 1.41363 * 119.76719 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00041 * 359.97438 * 17 16 15 19 19 C 1.40016 * 119.99935 * 180.02562 * 17 16 15 20 20 N 1.30749 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47012 * 89.99695 * 21 19 17 23 23 H 1.48496 * 109.47100 * 209.99640 * 21 19 17 24 24 H 1.48501 * 109.47083 * 329.99734 * 21 19 17 25 25 N 1.32246 * 119.61130 * 179.74872 * 12 11 10 26 26 C 1.39469 * 119.85987 * 359.74678 * 11 10 9 27 27 C 1.37847 * 119.92970 * 359.97438 * 26 11 10 28 28 H 1.09000 * 109.46718 * 296.03954 * 1 2 3 29 29 H 1.08993 * 109.47211 * 56.04570 * 1 2 3 30 30 H 1.09004 * 109.46774 * 176.04604 * 1 2 3 31 31 H 1.08997 * 109.47112 * 183.95826 * 3 2 1 32 32 H 1.08998 * 109.46630 * 303.95399 * 3 2 1 33 33 H 1.08999 * 109.46817 * 63.95439 * 3 2 1 34 34 H 1.09001 * 109.46874 * 49.99866 * 4 2 1 35 35 H 1.09004 * 109.46970 * 289.99999 * 4 2 1 36 36 H 1.09001 * 109.46997 * 60.00222 * 5 4 2 37 37 H 1.08992 * 109.47534 * 300.00276 * 5 4 2 38 38 H 1.09001 * 109.47289 * 60.00050 * 6 5 4 39 39 H 1.09004 * 109.47261 * 300.00306 * 6 5 4 40 40 H 1.08002 * 119.96465 * 0.02562 * 9 8 7 41 41 H 1.08004 * 120.03461 * 180.27659 * 10 9 8 42 42 H 1.07999 * 120.27416 * 359.95756 * 13 12 11 43 43 H 1.08001 * 120.64875 * 180.02562 * 14 13 12 44 44 H 1.08001 * 120.40616 * 179.97438 * 15 14 13 45 45 H 0.97003 * 119.99507 * 179.97438 * 20 19 17 46 46 H 1.08003 * 120.03167 * 180.02562 * 26 11 10 47 47 H 1.08003 * 119.96435 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0529 -1.7526 2.1553 7 8 5.4624 -1.9290 1.9994 8 6 6.1087 -2.6217 2.9728 9 6 5.3987 -3.1161 4.0593 10 6 6.0509 -3.8235 5.0464 11 6 7.4268 -4.0334 4.9586 12 6 8.1322 -4.7884 6.0213 13 6 7.4093 -5.2883 7.1105 14 6 8.0722 -5.9947 8.1027 15 6 9.4372 -6.1838 7.9841 16 6 10.1086 -5.6561 6.8663 17 6 11.5035 -5.8428 6.7327 18 1 12.0499 -6.3886 7.4875 19 6 12.1767 -5.3192 5.6223 20 7 11.5152 -4.6579 4.7087 21 14 14.0201 -5.5653 5.4462 22 1 14.2826 -6.8225 4.7005 23 1 14.6039 -4.4188 4.7047 24 1 14.6391 -5.6504 6.7934 25 7 9.4363 -4.9865 5.9264 26 6 8.1378 -3.5311 3.8690 27 6 7.4788 -2.8294 2.8822 28 1 -0.3633 0.4511 0.9234 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7976 -0.2248 2.0628 36 1 3.9910 0.0193 0.9322 37 1 3.7024 -1.4965 0.0451 38 1 3.5665 -2.7273 2.1938 39 1 3.8550 -1.2110 3.0804 40 1 4.3339 -2.9497 4.1287 41 1 5.4975 -4.2116 5.8888 42 1 6.3438 -5.1251 7.1779 43 1 7.5333 -6.3893 8.9513 44 1 9.9812 -6.7294 8.7410 45 1 11.9818 -4.2949 3.9396 46 1 9.2033 -3.6924 3.7980 47 1 8.0289 -2.4397 2.0384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245334967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:56 Heat of formation + Delta-G solvation = 19.977800 kcal Electronic energy + Delta-G solvation = -25878.239582 eV Core-core repulsion = 22218.990165 eV Total energy + Delta-G solvation = -3659.249418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.85410 -38.45989 -37.98430 -36.74457 -33.68504 -32.86272 -31.18541 -30.81710 -30.12448 -28.23247 -27.99609 -26.73726 -25.51092 -23.46122 -22.76947 -22.01922 -21.22590 -20.61378 -20.09807 -17.93367 -17.42027 -16.51812 -16.25182 -15.73201 -15.45058 -15.16136 -15.05276 -14.78124 -14.72508 -13.98438 -13.85024 -13.57865 -13.31130 -12.96740 -12.81362 -12.79536 -12.69766 -12.37216 -12.23960 -12.13268 -11.96280 -11.79422 -11.44840 -11.31406 -11.17036 -11.09404 -11.01072 -10.76545 -10.56040 -10.49616 -10.26954 -9.90863 -9.41739 -8.79717 -8.55166 -8.45668 -7.98256 -7.62901 -7.01920 -6.44328 -4.54468 1.61271 1.90572 2.80948 3.07138 3.08545 3.11132 3.12670 3.20738 3.71502 3.93301 4.33490 4.55321 4.70722 4.76895 4.83264 4.88444 4.98030 5.04117 5.11853 5.17754 5.21916 5.24584 5.32647 5.33227 5.45727 5.49135 5.53953 5.76794 5.80923 5.92367 5.92590 5.97376 6.08573 6.30590 6.43338 6.53716 6.57662 6.58765 6.62106 6.74204 6.75903 6.88331 7.09747 7.26850 7.33185 7.43826 7.57552 7.70511 7.75929 8.01746 8.20586 8.64362 8.89599 10.03715 10.28330 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002102 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.228380 B =13314.645474 C =14536.546493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.019 3.981 4 C 0.058 3.942 5 C -0.116 4.116 6 C 0.063 3.937 7 O -0.318 6.318 8 C 0.116 3.884 9 C -0.219 4.219 10 C -0.073 4.073 11 C -0.053 4.053 12 C 0.180 3.820 13 C -0.304 4.304 14 C -0.059 4.059 15 C -0.274 4.274 16 C 0.257 3.743 17 C -0.431 4.431 18 H 0.084 0.916 19 C 0.071 3.929 20 N -0.719 5.719 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.262 1.262 25 N -0.469 5.469 26 C -0.041 4.041 27 C -0.161 4.161 28 H 0.025 0.975 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.120 0.880 41 H 0.125 0.875 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.273 0.727 46 H 0.161 0.839 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.131 8.653 -7.870 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.129 4.129 4 C -0.070 4.070 5 C -0.154 4.154 6 C -0.013 4.013 7 O -0.232 6.232 8 C 0.072 3.928 9 C -0.238 4.238 10 C -0.092 4.092 11 C -0.054 4.054 12 C 0.036 3.964 13 C -0.327 4.327 14 C -0.083 4.083 15 C -0.297 4.297 16 C 0.132 3.868 17 C -0.463 4.463 18 H 0.102 0.898 19 C -0.154 4.154 20 N -0.340 5.340 21 Si 0.732 3.268 22 H -0.194 1.194 23 H -0.201 1.201 24 H -0.186 1.186 25 N -0.182 5.182 26 C -0.059 4.059 27 C -0.180 4.180 28 H 0.044 0.956 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.087 0.913 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.178 0.822 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -15.366 8.936 -9.378 20.098 hybrid contribution -0.255 -0.128 1.683 1.707 sum -15.621 8.808 -7.696 19.515 Atomic orbital electron populations 1.22389 0.87043 1.02426 1.00559 1.61926 1.07973 1.14173 1.43055 1.22479 1.01435 0.88531 1.00501 1.22010 0.94873 0.98647 0.91515 1.21497 0.94156 1.01212 0.98541 1.22618 0.80097 0.99914 0.98721 1.85984 1.21414 1.70770 1.45042 1.19050 0.92148 0.93570 0.88076 1.20961 0.99594 1.06427 0.96772 1.21041 0.93892 0.96619 0.97691 1.18785 0.92148 0.99326 0.95167 1.19711 0.91476 0.93986 0.91247 1.21198 0.98708 1.12817 0.99954 1.20776 0.94418 0.96479 0.96656 1.21781 0.94495 1.11037 1.02408 1.18519 0.93548 0.87943 0.86829 1.19589 0.91419 1.29661 1.05588 0.89834 1.26030 1.00383 0.93780 0.95212 1.70062 1.36642 1.21078 1.06222 0.86322 0.82266 0.78743 0.79452 1.19445 1.20103 1.18633 1.68737 1.04452 1.17316 1.27706 1.21618 1.02126 0.91651 0.90524 1.20430 0.91016 1.04844 1.01720 0.95612 0.91239 0.91213 0.90772 0.91342 0.95545 0.90340 0.94442 0.90797 0.89889 0.92123 0.92386 0.86242 0.85767 0.88556 0.88554 0.88310 0.91621 0.82163 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.06 0.57 0.72 16 2 N -0.55 -4.35 5.02 -251.26 -1.26 -5.61 16 3 C 0.02 0.13 9.32 60.07 0.56 0.69 16 4 C 0.06 0.44 4.96 -3.83 -0.02 0.43 16 5 C -0.12 -1.05 5.51 -26.73 -0.15 -1.20 16 6 C 0.06 0.67 4.74 37.16 0.18 0.85 16 7 O -0.32 -4.67 10.13 -19.19 -0.19 -4.86 16 8 C 0.12 1.93 6.69 -39.10 -0.26 1.67 16 9 C -0.22 -3.46 9.02 -39.48 -0.36 -3.82 16 10 C -0.07 -1.32 9.41 -39.27 -0.37 -1.69 16 11 C -0.05 -1.14 5.88 -104.88 -0.62 -1.76 16 12 C 0.18 4.42 6.73 -82.94 -0.56 3.86 16 13 C -0.30 -6.88 9.47 -38.78 -0.37 -7.24 16 14 C -0.06 -1.33 10.15 -39.40 -0.40 -1.73 16 15 C -0.27 -6.74 9.83 -38.64 -0.38 -7.12 16 16 C 0.26 7.00 6.55 -85.01 -0.56 6.44 16 17 C -0.43 -11.39 9.14 -37.73 -0.34 -11.73 16 18 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 19 C 0.07 1.77 5.50 -17.35 -0.10 1.67 16 20 N -0.72 -18.40 11.10 55.55 0.62 -17.78 16 21 Si 0.91 18.36 29.56 -169.99 -5.02 13.34 16 22 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 24 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 25 N -0.47 -12.71 6.91 -7.68 -0.05 -12.76 16 26 C -0.04 -0.85 9.56 -39.27 -0.38 -1.22 16 27 C -0.16 -2.91 9.97 -39.49 -0.39 -3.30 16 28 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 31 H 0.07 0.53 6.47 -51.93 -0.34 0.19 16 32 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 33 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 35 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 36 H 0.07 0.68 6.55 -51.93 -0.34 0.34 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.60 7.66 -51.93 -0.40 0.21 16 39 H 0.06 0.58 7.64 -51.93 -0.40 0.18 16 40 H 0.12 1.52 6.28 -52.49 -0.33 1.19 16 41 H 0.12 2.02 6.16 -52.48 -0.32 1.70 16 42 H 0.10 1.89 6.17 -52.49 -0.32 1.57 16 43 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 45 H 0.27 6.32 8.29 -40.82 -0.34 5.98 16 46 H 0.16 3.67 7.17 -52.48 -0.38 3.29 16 47 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 LS Contribution 385.43 15.07 5.81 5.81 Total: -1.00 -29.30 385.43 -11.05 -40.35 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.01 Total: 6.00 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -3.93 Total: -24.49 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.70 Total: -36.15 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.19 Total: -4.86 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.02 Total: 13.34 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.30 -11.05 -40.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245334967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.326 kcal (2) G-P(sol) polarization free energy of solvation -29.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds