Wall clock time and date at job start Tue Mar 31 2020 14:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46903 * 111.00054 * 2 1 4 4 C 1.46901 * 111.00390 * 123.95571 * 2 1 3 5 5 C 1.52996 * 109.47379 * 169.99719 * 4 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 5 4 2 7 7 O 1.42905 * 109.47264 * 180.02562 * 6 5 4 8 8 C 1.35823 * 117.00214 * 180.02562 * 7 6 5 9 9 C 1.38886 * 119.93149 * 359.72143 * 8 7 6 10 10 C 1.37848 * 120.07108 * 179.76775 * 9 8 7 11 11 C 1.39461 * 119.92950 * 0.51077 * 10 9 8 12 12 C 1.48226 * 120.07292 * 179.72352 * 11 10 9 13 13 C 1.39963 * 119.60568 * 0.02562 * 12 11 10 14 14 C 1.38662 * 119.45601 * 179.97438 * 13 12 11 15 15 C 1.38308 * 118.69876 * 0.02562 * 14 13 12 16 16 C 1.40675 * 119.19736 * 0.02562 * 15 14 13 17 17 C 1.41363 * 119.76719 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00041 * 359.97438 * 17 16 15 19 19 C 1.40016 * 119.99935 * 180.02562 * 17 16 15 20 20 N 1.30749 * 120.00020 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99882 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47012 * 89.99695 * 21 19 17 23 23 H 1.48496 * 109.47100 * 209.99640 * 21 19 17 24 24 H 1.48501 * 109.47083 * 329.99734 * 21 19 17 25 25 N 1.32246 * 119.61130 * 179.74872 * 12 11 10 26 26 C 1.39469 * 119.85987 * 359.74678 * 11 10 9 27 27 C 1.37847 * 119.92970 * 359.97438 * 26 11 10 28 28 H 1.09000 * 109.46718 * 296.03954 * 1 2 3 29 29 H 1.08993 * 109.47211 * 56.04570 * 1 2 3 30 30 H 1.09004 * 109.46774 * 176.04604 * 1 2 3 31 31 H 1.08997 * 109.47112 * 183.95826 * 3 2 1 32 32 H 1.08998 * 109.46630 * 303.95399 * 3 2 1 33 33 H 1.08999 * 109.46817 * 63.95439 * 3 2 1 34 34 H 1.09001 * 109.46874 * 49.99866 * 4 2 1 35 35 H 1.09004 * 109.46970 * 289.99999 * 4 2 1 36 36 H 1.09001 * 109.46997 * 60.00222 * 5 4 2 37 37 H 1.08992 * 109.47534 * 300.00276 * 5 4 2 38 38 H 1.09001 * 109.47289 * 60.00050 * 6 5 4 39 39 H 1.09004 * 109.47261 * 300.00306 * 6 5 4 40 40 H 1.08002 * 119.96465 * 0.02562 * 9 8 7 41 41 H 1.08004 * 120.03461 * 180.27659 * 10 9 8 42 42 H 1.07999 * 120.27416 * 359.95756 * 13 12 11 43 43 H 1.08001 * 120.64875 * 180.02562 * 14 13 12 44 44 H 1.08001 * 120.40616 * 179.97438 * 15 14 13 45 45 H 0.97003 * 119.99507 * 179.97438 * 20 19 17 46 46 H 1.08003 * 120.03167 * 180.02562 * 26 11 10 47 47 H 1.08003 * 119.96435 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.5045 -0.9554 0.9702 6 6 4.0529 -1.7526 2.1553 7 8 5.4624 -1.9290 1.9994 8 6 6.1087 -2.6217 2.9728 9 6 5.3987 -3.1161 4.0593 10 6 6.0509 -3.8235 5.0464 11 6 7.4268 -4.0334 4.9586 12 6 8.1322 -4.7884 6.0213 13 6 7.4093 -5.2883 7.1105 14 6 8.0722 -5.9947 8.1027 15 6 9.4372 -6.1838 7.9841 16 6 10.1086 -5.6561 6.8663 17 6 11.5035 -5.8428 6.7327 18 1 12.0499 -6.3886 7.4875 19 6 12.1767 -5.3192 5.6223 20 7 11.5152 -4.6579 4.7087 21 14 14.0201 -5.5653 5.4462 22 1 14.2826 -6.8225 4.7005 23 1 14.6039 -4.4188 4.7047 24 1 14.6391 -5.6504 6.7934 25 7 9.4363 -4.9865 5.9264 26 6 8.1378 -3.5311 3.8690 27 6 7.4788 -2.8294 2.8822 28 1 -0.3633 0.4511 0.9234 29 1 -0.3633 0.5739 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 1.5090 -1.7407 1.1755 35 1 1.7976 -0.2248 2.0628 36 1 3.9910 0.0193 0.9322 37 1 3.7024 -1.4965 0.0451 38 1 3.5665 -2.7273 2.1938 39 1 3.8550 -1.2110 3.0804 40 1 4.3339 -2.9497 4.1287 41 1 5.4975 -4.2116 5.8888 42 1 6.3438 -5.1251 7.1779 43 1 7.5333 -6.3893 8.9513 44 1 9.9812 -6.7294 8.7410 45 1 11.9818 -4.2949 3.9396 46 1 9.2033 -3.6924 3.7980 47 1 8.0289 -2.4397 2.0384 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245334967.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:55 Heat of formation + Delta-G solvation = 4.352345 kcal Electronic energy + Delta-G solvation = -25878.917153 eV Core-core repulsion = 22218.990165 eV Total energy + Delta-G solvation = -3659.926988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.14289 -40.06495 -38.77295 -38.04110 -35.51097 -33.76279 -32.79087 -32.41630 -31.72813 -29.78565 -28.49490 -27.75714 -27.11744 -24.48431 -24.29873 -23.41041 -22.41865 -21.70909 -21.61227 -19.39388 -19.02322 -17.67293 -17.33249 -16.95480 -16.48158 -16.41964 -16.21602 -16.15065 -15.64880 -15.58408 -15.06345 -14.87908 -14.70570 -14.32126 -14.30456 -14.21629 -13.82779 -13.34715 -13.30934 -12.96908 -12.84284 -12.79821 -12.72903 -12.68232 -12.58036 -12.39789 -12.31329 -12.14733 -12.09419 -11.75137 -11.55053 -11.48558 -11.19483 -10.23883 -9.89957 -9.78226 -9.48374 -9.33662 -8.62103 -8.27888 -6.49701 0.06693 0.49389 1.06348 1.32062 1.40722 1.53443 1.56595 2.14296 2.23222 2.74027 3.07451 3.07808 3.76077 3.88515 3.90630 4.00940 4.01679 4.09926 4.11813 4.26975 4.35464 4.39743 4.40387 4.49257 4.50339 4.55724 4.63754 4.72744 4.73780 4.76244 4.83680 4.91390 4.95850 5.00413 5.02900 5.10754 5.11234 5.19569 5.22592 5.33438 5.36212 5.59437 5.64711 5.82691 5.91155 5.92183 6.04255 6.07429 6.21472 6.29620 6.50926 6.76159 6.97753 8.17806 8.46145 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.021012 B = 0.002102 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.228380 B =13314.645474 C =14536.546493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.564 5.564 3 C 0.018 3.982 4 C 0.061 3.939 5 C -0.108 4.108 6 C 0.054 3.946 7 O -0.326 6.326 8 C 0.129 3.871 9 C -0.206 4.206 10 C -0.065 4.065 11 C -0.089 4.089 12 C 0.158 3.842 13 C -0.304 4.304 14 C -0.057 4.057 15 C -0.299 4.299 16 C 0.221 3.779 17 C -0.469 4.469 18 H 0.087 0.913 19 C 0.025 3.975 20 N -0.750 5.750 21 Si 0.986 3.014 22 H -0.264 1.264 23 H -0.269 1.269 24 H -0.257 1.257 25 N -0.501 5.501 26 C -0.059 4.059 27 C -0.169 4.169 28 H 0.029 0.971 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.029 0.971 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.161 0.839 41 H 0.145 0.855 42 H 0.131 0.869 43 H 0.136 0.864 44 H 0.109 0.891 45 H 0.278 0.722 46 H 0.128 0.872 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.693 9.272 -8.012 22.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.288 5.288 3 C -0.130 4.130 4 C -0.067 4.067 5 C -0.146 4.146 6 C -0.021 4.021 7 O -0.240 6.240 8 C 0.083 3.917 9 C -0.224 4.224 10 C -0.084 4.084 11 C -0.090 4.090 12 C 0.015 3.985 13 C -0.326 4.326 14 C -0.081 4.081 15 C -0.322 4.322 16 C 0.095 3.905 17 C -0.500 4.500 18 H 0.105 0.895 19 C -0.197 4.197 20 N -0.372 5.372 21 Si 0.806 3.194 22 H -0.189 1.189 23 H -0.193 1.193 24 H -0.181 1.181 25 N -0.215 5.215 26 C -0.078 4.078 27 C -0.187 4.187 28 H 0.048 0.952 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.178 0.822 41 H 0.163 0.837 42 H 0.149 0.851 43 H 0.154 0.846 44 H 0.127 0.873 45 H 0.088 0.912 46 H 0.146 0.854 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.966 9.562 -9.517 22.468 hybrid contribution 0.295 -0.227 1.639 1.681 sum -17.672 9.335 -7.878 21.482 Atomic orbital electron populations 1.22425 0.86026 1.02915 1.01048 1.61928 1.09022 1.14609 1.43281 1.22489 1.01145 0.88358 1.00991 1.21968 0.93686 0.99215 0.91784 1.21429 0.95168 1.00572 0.97448 1.22956 0.77814 1.01229 1.00106 1.85996 1.23747 1.69937 1.44335 1.19062 0.91658 0.92520 0.88423 1.21317 1.01385 1.04512 0.95231 1.21227 0.92280 0.96157 0.98735 1.18857 0.93809 1.01211 0.95135 1.20378 0.91212 0.94139 0.92810 1.21617 1.00367 1.11600 0.99021 1.21217 0.93743 0.95491 0.97642 1.21979 0.95886 1.11991 1.02336 1.19034 0.94533 0.88848 0.88046 1.19926 0.91951 1.31274 1.06892 0.89483 1.26933 1.05236 0.93088 0.94396 1.70182 1.38620 1.21709 1.06724 0.85156 0.75899 0.78794 0.79507 1.18908 1.19305 1.18075 1.68722 1.06017 1.18309 1.28404 1.21375 1.00963 0.93463 0.91957 1.20454 0.92272 1.04678 1.01342 0.95228 0.90634 0.90778 0.91301 0.90626 0.95272 0.89548 0.93831 0.91153 0.90866 0.90634 0.90880 0.82152 0.83703 0.85104 0.84600 0.87314 0.91157 0.85377 0.84791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.57 127.69 1.22 1.46 16 2 N -0.56 -7.73 5.02 -948.85 -4.76 -12.49 16 3 C 0.02 0.22 9.32 127.69 1.19 1.41 16 4 C 0.06 0.78 4.96 86.30 0.43 1.21 16 5 C -0.11 -1.70 5.51 30.59 0.17 -1.53 16 6 C 0.05 0.97 4.74 71.98 0.34 1.31 16 7 O -0.33 -8.74 10.13 -91.57 -0.93 -9.67 16 8 C 0.13 4.02 6.69 22.58 0.15 4.17 16 9 C -0.21 -5.82 9.02 22.33 0.20 -5.62 16 10 C -0.07 -2.19 9.41 22.47 0.21 -1.98 16 11 C -0.09 -3.86 5.88 -20.03 -0.12 -3.98 16 12 C 0.16 7.93 6.73 42.16 0.28 8.22 16 13 C -0.30 -13.45 9.47 22.79 0.22 -13.24 16 14 C -0.06 -2.51 10.15 22.39 0.23 -2.28 16 15 C -0.30 -15.05 9.83 22.88 0.22 -14.83 16 16 C 0.22 12.61 6.55 40.25 0.26 12.87 16 17 C -0.47 -26.00 9.14 23.47 0.21 -25.78 16 18 H 0.09 4.52 7.85 -2.91 -0.02 4.49 16 19 C 0.03 1.31 5.50 85.29 0.47 1.78 16 20 N -0.75 -40.58 11.10 21.83 0.24 -40.34 16 21 Si 0.99 38.88 29.56 68.60 2.03 40.91 16 22 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.42 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 N -0.50 -28.50 6.91 -178.22 -1.23 -29.73 16 26 C -0.06 -2.55 9.56 22.47 0.21 -2.33 16 27 C -0.17 -6.11 9.97 22.33 0.22 -5.88 16 28 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 29 H 0.07 0.66 8.12 -2.39 -0.02 0.64 16 30 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 31 H 0.07 0.89 6.47 -2.39 -0.02 0.87 16 32 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 33 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.09 0.96 8.06 -2.39 -0.02 0.94 16 35 H 0.04 0.51 8.12 -2.38 -0.02 0.49 16 36 H 0.07 1.16 6.55 -2.39 -0.02 1.14 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.08 1.18 7.66 -2.39 -0.02 1.16 16 39 H 0.07 1.14 7.64 -2.38 -0.02 1.12 16 40 H 0.16 3.20 6.28 -2.91 -0.02 3.18 16 41 H 0.15 4.19 6.16 -2.91 -0.02 4.17 16 42 H 0.13 4.75 6.17 -2.91 -0.02 4.73 16 43 H 0.14 4.79 8.06 -2.91 -0.02 4.77 16 44 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 45 H 0.28 13.61 8.29 -92.71 -0.77 12.84 16 46 H 0.13 6.36 7.17 -2.91 -0.02 6.34 16 47 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -67.13 385.43 2.44 -64.69 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: 0.96 Total: 31.67 kcal Atomic # 6 Polarization: -51.16 SS G_CDS: 6.13 Total: -45.03 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -5.75 Total: -82.56 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.93 Total: -9.67 kcal Atomic # 14 Polarization: 38.88 SS G_CDS: 2.03 Total: 40.91 kcal Total: -67.13 2.44 -64.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245334967.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.042 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds