Wall clock time and date at job start Tue Mar 31 2020 14:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99634 * 2 1 4 4 C 1.46900 * 110.99771 * 123.94819 * 2 1 3 5 5 C 1.53008 * 109.46806 * 66.04971 * 4 2 1 6 6 C 1.52999 * 109.46619 * 179.97438 * 5 4 2 7 7 O 1.42899 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.35849 * 117.00370 * 179.97438 * 7 6 5 9 9 C 1.38857 * 119.93509 * 180.02562 * 8 7 6 10 10 C 1.37873 * 120.06519 * 180.02562 * 9 8 7 11 11 C 1.39416 * 119.93179 * 359.97107 * 10 9 8 12 12 C 1.48297 * 120.06326 * 180.02562 * 11 10 9 13 13 C 1.38950 * 119.61805 * 180.02562 * 12 11 10 14 14 C 1.40823 * 118.76232 * 179.97438 * 13 12 11 15 15 C 1.41534 * 120.98686 * 180.27390 * 14 13 12 16 16 H 1.07995 * 119.99959 * 155.86338 * 15 14 13 17 17 C 1.40045 * 119.99569 * 335.86264 * 15 14 13 18 18 N 1.30733 * 120.00140 * 343.27785 * 17 15 14 19 19 Si 1.86799 * 119.99660 * 163.28179 * 17 15 14 20 20 H 1.48494 * 109.47440 * 59.99817 * 19 17 15 21 21 H 1.48497 * 109.47094 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47153 * 299.99648 * 19 17 15 23 23 C 1.41155 * 118.03153 * 359.97438 * 14 13 12 24 24 C 1.37722 * 119.08266 * 0.02562 * 23 14 13 25 25 N 1.31937 * 121.15789 * 359.97438 * 24 23 14 26 26 C 1.39404 * 119.87087 * 0.28142 * 11 10 9 27 27 C 1.37887 * 119.93050 * 359.48961 * 26 11 10 28 28 H 1.09003 * 109.47380 * 296.04916 * 1 2 3 29 29 H 1.08999 * 109.47397 * 56.04646 * 1 2 3 30 30 H 1.08998 * 109.46866 * 176.04891 * 1 2 3 31 31 H 1.09006 * 109.46647 * 183.95846 * 3 2 1 32 32 H 1.09008 * 109.47201 * 303.94737 * 3 2 1 33 33 H 1.08997 * 109.47345 * 63.95383 * 3 2 1 34 34 H 1.08990 * 109.47770 * 306.04742 * 4 2 1 35 35 H 1.09004 * 109.46639 * 186.04367 * 4 2 1 36 36 H 1.08997 * 109.46933 * 59.99768 * 5 4 2 37 37 H 1.08995 * 109.47108 * 299.99310 * 5 4 2 38 38 H 1.08997 * 109.47321 * 60.00418 * 6 5 4 39 39 H 1.09004 * 109.47069 * 299.99544 * 6 5 4 40 40 H 1.08002 * 119.96515 * 359.97438 * 9 8 7 41 41 H 1.07996 * 120.03299 * 180.02562 * 10 9 8 42 42 H 1.07995 * 120.61974 * 359.97438 * 13 12 11 43 43 H 0.96993 * 120.00023 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.46178 * 179.97438 * 23 14 13 45 45 H 1.07992 * 119.42104 * 180.02562 * 24 23 14 46 46 H 1.08002 * 120.03897 * 179.69674 * 26 11 10 47 47 H 1.07995 * 119.96445 * 180.21185 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9704 6 6 2.1802 -3.0403 2.1550 7 8 1.8398 -4.4194 1.9992 8 6 2.2558 -5.2712 2.9723 9 6 1.9589 -6.6246 2.8819 10 6 2.3793 -7.4914 3.8682 11 6 3.1036 -7.0078 4.9569 12 6 3.5577 -7.9376 6.0192 13 6 4.2785 -7.4456 7.1004 14 6 4.7003 -8.3444 8.0990 15 6 5.4322 -7.8934 9.2234 16 1 5.4176 -8.4626 10.1410 17 6 6.1754 -6.7089 9.1458 18 7 6.4663 -6.1949 7.9795 19 14 6.7509 -5.8635 10.7090 20 1 7.6249 -6.7857 11.4775 21 1 7.5128 -4.6383 10.3573 22 1 5.5731 -5.4946 11.5347 23 6 4.3660 -9.7075 7.9488 24 6 3.6478 -10.1026 6.8421 25 7 3.2698 -9.2309 5.9267 26 6 3.3956 -5.6477 5.0476 27 6 2.9765 -4.7864 4.0556 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8526 33 1 1.7043 1.8723 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1756 36 1 2.0658 -2.6213 0.0453 37 1 0.5472 -2.3475 0.9325 38 1 1.7462 -2.6617 3.0804 39 1 3.2646 -2.9354 2.1926 40 1 1.3974 -6.9985 2.0385 41 1 2.1484 -8.5440 3.7972 42 1 4.5110 -6.3935 7.1735 43 1 6.9813 -5.3748 7.9258 44 1 4.6700 -10.4308 8.6910 45 1 3.3887 -11.1441 6.7219 46 1 3.9523 -5.2694 5.8922 47 1 3.2054 -3.7332 4.1236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245335506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:59 Heat of formation + Delta-G solvation = 7.995824 kcal Electronic energy + Delta-G solvation = -25859.936084 eV Core-core repulsion = 22200.167089 eV Total energy + Delta-G solvation = -3659.768995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.90196 -38.56679 -38.01170 -36.80561 -34.17719 -32.90968 -31.21835 -30.86868 -30.23132 -28.00261 -27.85187 -26.58781 -25.96841 -23.49894 -22.87806 -21.96230 -21.33076 -20.74310 -20.14508 -17.99750 -17.52892 -16.51909 -16.10102 -15.76725 -15.45256 -15.18762 -15.13416 -15.04008 -14.51234 -14.14555 -13.86222 -13.65269 -13.42514 -13.03042 -12.88118 -12.81860 -12.77374 -12.58580 -12.37320 -12.13520 -12.00058 -11.79534 -11.54527 -11.47448 -11.33322 -11.18773 -11.16123 -10.94696 -10.58392 -10.39810 -10.32845 -9.87417 -9.47348 -8.78994 -8.57814 -8.42821 -8.08097 -7.99417 -7.02934 -6.86303 -4.65095 1.56091 1.82494 2.75046 2.88837 2.97548 3.00064 3.10695 3.21887 3.71147 3.80270 4.23738 4.55824 4.68549 4.71199 4.77363 4.88568 4.98947 5.04965 5.11966 5.17975 5.22202 5.23759 5.31537 5.32716 5.38278 5.47368 5.53787 5.65461 5.71564 5.79260 5.92078 5.93815 6.04934 6.13842 6.44312 6.54282 6.58663 6.59555 6.68409 6.76485 6.79489 6.93717 7.04583 7.16203 7.21705 7.36046 7.44035 7.68582 7.80990 8.05586 8.38808 8.66940 8.68742 9.53693 10.00823 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.002356 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.628170 B =11881.876406 C =13806.792439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.057 3.943 5 C -0.115 4.115 6 C 0.062 3.938 7 O -0.318 6.318 8 C 0.114 3.886 9 C -0.159 4.159 10 C -0.056 4.056 11 C -0.046 4.046 12 C 0.141 3.859 13 C -0.192 4.192 14 C 0.125 3.875 15 C -0.455 4.455 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.786 5.786 19 Si 0.912 3.088 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.274 4.274 24 C 0.104 3.896 25 N -0.566 5.566 26 C -0.067 4.067 27 C -0.211 4.211 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.026 0.974 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.062 0.938 40 H 0.125 0.875 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.284 0.716 44 H 0.101 0.899 45 H 0.122 0.878 46 H 0.133 0.867 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.130 13.001 -11.149 18.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.153 4.153 6 C -0.014 4.014 7 O -0.232 6.232 8 C 0.070 3.930 9 C -0.178 4.178 10 C -0.074 4.074 11 C -0.047 4.047 12 C 0.010 3.990 13 C -0.215 4.215 14 C 0.117 3.883 15 C -0.486 4.486 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.412 5.412 19 Si 0.736 3.264 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.297 4.297 24 C -0.051 4.051 25 N -0.281 5.281 26 C -0.086 4.086 27 C -0.230 4.230 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.143 0.857 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.095 0.905 44 H 0.119 0.881 45 H 0.140 0.860 46 H 0.151 0.849 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.430 12.643 -12.609 19.340 hybrid contribution 0.813 1.247 2.420 2.841 sum -6.617 13.891 -10.189 18.454 Atomic orbital electron populations 1.22478 0.87228 1.02730 1.00509 1.61933 1.08243 1.13901 1.43043 1.22393 1.00929 0.88551 1.00569 1.22016 1.00605 0.92959 0.91536 1.21494 1.02233 0.93100 0.98498 1.22639 1.00013 0.79989 0.98794 1.85972 1.74457 1.17783 1.45034 1.18992 0.95801 0.90022 0.88227 1.20316 1.05904 0.90130 1.01456 1.21139 0.94660 0.99927 0.91685 1.18719 0.98966 0.92274 0.94786 1.19237 0.96598 0.90060 0.93069 1.22244 1.01960 1.01043 0.96214 1.17780 0.88266 0.90354 0.91871 1.19579 1.24647 1.05763 0.98599 0.89992 1.25978 0.94222 0.96435 0.97581 1.69755 1.27891 1.18093 1.25415 0.86299 0.79497 0.78857 0.81761 1.18813 1.20157 1.18652 1.21910 1.10240 0.96241 1.01314 1.21810 0.95405 0.97110 0.90823 1.67258 1.27520 1.02334 1.31024 1.21177 0.97100 0.92407 0.97903 1.21045 1.05369 1.00118 0.96424 0.95539 0.91352 0.90809 0.91186 0.91243 0.95580 0.94395 0.90280 0.89910 0.90822 0.92297 0.91990 0.85729 0.84390 0.85128 0.90471 0.88068 0.86015 0.84936 0.86013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.55 -4.43 5.02 -251.25 -1.26 -5.69 16 3 C 0.02 0.15 9.57 60.06 0.57 0.73 16 4 C 0.06 0.45 4.96 -3.82 -0.02 0.43 16 5 C -0.12 -1.05 5.51 -26.73 -0.15 -1.20 16 6 C 0.06 0.67 4.74 37.16 0.18 0.85 16 7 O -0.32 -4.57 10.13 -19.27 -0.20 -4.76 16 8 C 0.11 1.85 6.69 -39.12 -0.26 1.59 16 9 C -0.16 -2.65 9.97 -39.49 -0.39 -3.05 16 10 C -0.06 -1.05 9.56 -39.28 -0.38 -1.42 16 11 C -0.05 -0.98 5.88 -104.89 -0.62 -1.60 16 12 C 0.14 3.41 6.73 -83.04 -0.56 2.86 16 13 C -0.19 -4.92 8.14 -38.34 -0.31 -5.24 16 14 C 0.13 3.28 5.60 -106.56 -0.60 2.69 16 15 C -0.45 -11.63 9.12 -37.65 -0.34 -11.98 16 16 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 17 C 0.08 1.86 5.20 -17.34 -0.09 1.77 16 18 N -0.79 -19.34 10.93 55.55 0.61 -18.73 16 19 Si 0.91 17.80 29.59 -169.99 -5.03 12.77 16 20 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.27 -6.63 9.90 -38.66 -0.38 -7.01 16 24 C 0.10 2.39 11.15 -17.70 -0.20 2.19 16 25 N -0.57 -13.62 9.39 -9.95 -0.09 -13.71 16 26 C -0.07 -1.28 9.41 -39.28 -0.37 -1.65 16 27 C -0.21 -3.45 9.02 -39.48 -0.36 -3.81 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.52 6.47 -51.93 -0.34 0.18 16 31 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.12 -51.92 -0.42 -0.03 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 35 H 0.08 0.60 8.06 -51.93 -0.42 0.18 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.67 6.55 -51.93 -0.34 0.33 16 38 H 0.06 0.60 7.65 -51.93 -0.40 0.21 16 39 H 0.06 0.64 7.66 -51.93 -0.40 0.24 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.14 2.57 7.52 -52.49 -0.39 2.17 16 42 H 0.13 3.32 4.32 -52.49 -0.23 3.10 16 43 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 44 H 0.10 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.12 2.36 8.06 -52.49 -0.42 1.94 16 46 H 0.13 2.59 6.17 -52.49 -0.32 2.27 16 47 H 0.12 1.66 6.28 -52.49 -0.33 1.33 16 LS Contribution 384.81 15.07 5.80 5.80 Total: -1.00 -28.47 384.81 -10.82 -39.29 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -6.94 Total: 8.20 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -3.71 Total: -23.15 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: -0.75 Total: -38.14 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.20 Total: -4.76 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.47 -10.82 -39.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245335506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.286 kcal (2) G-P(sol) polarization free energy of solvation -28.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds