Wall clock time and date at job start Tue Mar 31 2020 14:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46897 * 110.99634 * 2 1 4 4 C 1.46900 * 110.99771 * 123.94819 * 2 1 3 5 5 C 1.53008 * 109.46806 * 66.04971 * 4 2 1 6 6 C 1.52999 * 109.46619 * 179.97438 * 5 4 2 7 7 O 1.42899 * 109.46932 * 179.97438 * 6 5 4 8 8 C 1.35849 * 117.00370 * 179.97438 * 7 6 5 9 9 C 1.38857 * 119.93509 * 180.02562 * 8 7 6 10 10 C 1.37873 * 120.06519 * 180.02562 * 9 8 7 11 11 C 1.39416 * 119.93179 * 359.97107 * 10 9 8 12 12 C 1.48297 * 120.06326 * 180.02562 * 11 10 9 13 13 C 1.38950 * 119.61805 * 180.02562 * 12 11 10 14 14 C 1.40823 * 118.76232 * 179.97438 * 13 12 11 15 15 C 1.41534 * 120.98686 * 180.27390 * 14 13 12 16 16 H 1.07995 * 119.99959 * 155.86338 * 15 14 13 17 17 C 1.40045 * 119.99569 * 335.86264 * 15 14 13 18 18 N 1.30733 * 120.00140 * 343.27785 * 17 15 14 19 19 Si 1.86799 * 119.99660 * 163.28179 * 17 15 14 20 20 H 1.48494 * 109.47440 * 59.99817 * 19 17 15 21 21 H 1.48497 * 109.47094 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47153 * 299.99648 * 19 17 15 23 23 C 1.41155 * 118.03153 * 359.97438 * 14 13 12 24 24 C 1.37722 * 119.08266 * 0.02562 * 23 14 13 25 25 N 1.31937 * 121.15789 * 359.97438 * 24 23 14 26 26 C 1.39404 * 119.87087 * 0.28142 * 11 10 9 27 27 C 1.37887 * 119.93050 * 359.48961 * 26 11 10 28 28 H 1.09003 * 109.47380 * 296.04916 * 1 2 3 29 29 H 1.08999 * 109.47397 * 56.04646 * 1 2 3 30 30 H 1.08998 * 109.46866 * 176.04891 * 1 2 3 31 31 H 1.09006 * 109.46647 * 183.95846 * 3 2 1 32 32 H 1.09008 * 109.47201 * 303.94737 * 3 2 1 33 33 H 1.08997 * 109.47345 * 63.95383 * 3 2 1 34 34 H 1.08990 * 109.47770 * 306.04742 * 4 2 1 35 35 H 1.09004 * 109.46639 * 186.04367 * 4 2 1 36 36 H 1.08997 * 109.46933 * 59.99768 * 5 4 2 37 37 H 1.08995 * 109.47108 * 299.99310 * 5 4 2 38 38 H 1.08997 * 109.47321 * 60.00418 * 6 5 4 39 39 H 1.09004 * 109.47069 * 299.99544 * 6 5 4 40 40 H 1.08002 * 119.96515 * 359.97438 * 9 8 7 41 41 H 1.07996 * 120.03299 * 180.02562 * 10 9 8 42 42 H 1.07995 * 120.61974 * 359.97438 * 13 12 11 43 43 H 0.96993 * 120.00023 * 180.02562 * 18 17 15 44 44 H 1.08000 * 120.46178 * 179.97438 * 23 14 13 45 45 H 1.07992 * 119.42104 * 180.02562 * 24 23 14 46 46 H 1.08002 * 120.03897 * 179.69674 * 26 11 10 47 47 H 1.07995 * 119.96445 * 180.21185 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1377 5 6 1.6314 -2.2426 0.9704 6 6 2.1802 -3.0403 2.1550 7 8 1.8398 -4.4194 1.9992 8 6 2.2558 -5.2712 2.9723 9 6 1.9589 -6.6246 2.8819 10 6 2.3793 -7.4914 3.8682 11 6 3.1036 -7.0078 4.9569 12 6 3.5577 -7.9376 6.0192 13 6 4.2785 -7.4456 7.1004 14 6 4.7003 -8.3444 8.0990 15 6 5.4322 -7.8934 9.2234 16 1 5.4176 -8.4626 10.1410 17 6 6.1754 -6.7089 9.1458 18 7 6.4663 -6.1949 7.9795 19 14 6.7509 -5.8635 10.7090 20 1 7.6249 -6.7857 11.4775 21 1 7.5128 -4.6383 10.3573 22 1 5.5731 -5.4946 11.5347 23 6 4.3660 -9.7075 7.9488 24 6 3.6478 -10.1026 6.8421 25 7 3.2698 -9.2309 5.9267 26 6 3.3956 -5.6477 5.0476 27 6 2.9765 -4.7864 4.0556 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0708 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9163 -0.8526 33 1 1.7043 1.8723 0.9233 34 1 1.5612 -0.3872 2.0628 35 1 3.0798 -0.6610 1.1756 36 1 2.0658 -2.6213 0.0453 37 1 0.5472 -2.3475 0.9325 38 1 1.7462 -2.6617 3.0804 39 1 3.2646 -2.9354 2.1926 40 1 1.3974 -6.9985 2.0385 41 1 2.1484 -8.5440 3.7972 42 1 4.5110 -6.3935 7.1735 43 1 6.9813 -5.3748 7.9258 44 1 4.6700 -10.4308 8.6910 45 1 3.3887 -11.1441 6.7219 46 1 3.9523 -5.2694 5.8922 47 1 3.2054 -3.7332 4.1236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245335506.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:58 Heat of formation + Delta-G solvation = -6.793849 kcal Electronic energy + Delta-G solvation = -25860.577412 eV Core-core repulsion = 22200.167089 eV Total energy + Delta-G solvation = -3660.410323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20098 -40.18844 -38.80157 -38.07464 -36.01238 -33.82108 -32.82990 -32.43226 -31.80831 -29.34078 -28.50145 -27.93004 -27.36874 -24.60781 -24.34871 -23.40188 -22.54806 -21.77020 -21.66978 -19.47670 -19.03899 -17.52075 -17.36028 -17.14285 -16.72231 -16.28889 -16.22754 -16.17138 -15.71071 -15.63869 -15.17452 -14.95608 -14.75212 -14.48532 -14.38841 -14.26554 -14.08756 -13.40899 -13.32567 -13.17411 -13.06055 -12.88369 -12.79061 -12.67854 -12.67149 -12.43153 -12.32170 -12.12457 -11.99088 -11.80203 -11.60275 -11.49819 -11.24926 -10.09936 -9.95853 -9.92451 -9.85630 -9.35394 -8.75513 -8.55813 -6.57880 0.00387 0.42801 0.98875 1.16915 1.37446 1.49055 1.57827 2.10906 2.16634 2.64371 2.96988 3.06193 3.63740 3.77822 3.85422 3.86527 3.94608 4.07999 4.09291 4.25106 4.31348 4.36446 4.38486 4.47180 4.48216 4.50885 4.62432 4.70573 4.72181 4.77250 4.81927 4.95384 4.98101 4.99199 5.01466 5.07027 5.09644 5.16768 5.21497 5.26993 5.35227 5.48442 5.52058 5.77959 5.80958 5.93320 6.02607 6.05769 6.19470 6.44149 6.51885 6.78418 6.78782 7.68024 8.22887 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013320 B = 0.002356 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.628170 B =11881.876406 C =13806.792439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.106 4.106 6 C 0.054 3.946 7 O -0.321 6.321 8 C 0.128 3.872 9 C -0.157 4.157 10 C -0.056 4.056 11 C -0.084 4.084 12 C 0.138 3.862 13 C -0.221 4.221 14 C 0.094 3.906 15 C -0.487 4.487 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.812 5.812 19 Si 0.986 3.014 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.260 1.260 23 C -0.293 4.293 24 C 0.102 3.898 25 N -0.576 5.576 26 C -0.073 4.073 27 C -0.205 4.205 28 H 0.028 0.972 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.151 0.849 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.293 0.707 44 H 0.114 0.886 45 H 0.159 0.841 46 H 0.120 0.880 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.501 14.732 -11.960 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.144 4.144 6 C -0.022 4.022 7 O -0.235 6.235 8 C 0.082 3.918 9 C -0.176 4.176 10 C -0.075 4.075 11 C -0.085 4.085 12 C 0.007 3.993 13 C -0.243 4.243 14 C 0.087 3.913 15 C -0.517 4.517 16 H 0.102 0.898 17 C -0.179 4.179 18 N -0.438 5.438 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.316 4.316 24 C -0.053 4.053 25 N -0.291 5.291 26 C -0.092 4.092 27 C -0.223 4.223 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.095 0.905 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.168 0.832 41 H 0.154 0.846 42 H 0.142 0.858 43 H 0.104 0.896 44 H 0.132 0.868 45 H 0.176 0.824 46 H 0.138 0.862 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -7.807 14.374 -13.439 21.170 hybrid contribution 0.865 0.783 2.495 2.754 sum -6.943 15.157 -10.944 19.943 Atomic orbital electron populations 1.22501 0.86755 1.02757 1.00988 1.61941 1.08850 1.14785 1.43098 1.22431 1.01138 0.87850 1.01056 1.21976 1.00947 0.92117 0.91796 1.21413 1.02080 0.93532 0.97331 1.22936 1.00865 0.78210 1.00154 1.85991 1.74038 1.19272 1.44156 1.19067 0.94348 0.90313 0.88070 1.20531 1.05428 0.90221 1.01402 1.21123 0.94479 1.00262 0.91602 1.18761 1.01666 0.92677 0.95416 1.19720 0.95477 0.90706 0.93392 1.22255 1.03862 1.00814 0.97387 1.18234 0.88944 0.91546 0.92618 1.19869 1.25804 1.07376 0.98688 0.89828 1.26857 0.93746 0.96362 1.00950 1.69807 1.27983 1.18541 1.27449 0.85183 0.79030 0.77915 0.77239 1.18221 1.18859 1.18393 1.22136 1.11122 0.95950 1.02401 1.22381 0.94265 0.98650 0.90005 1.67389 1.27949 1.02434 1.31352 1.21137 0.97442 0.92194 0.98453 1.21254 1.04491 1.01128 0.95439 0.95377 0.90529 0.91076 0.90903 0.90471 0.95334 0.94023 0.89825 0.90590 0.90787 0.91217 0.91114 0.83166 0.84630 0.85849 0.89598 0.86766 0.82433 0.86233 0.83126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.32 127.69 1.19 1.41 16 2 N -0.56 -8.00 5.02 -948.82 -4.76 -12.77 16 3 C 0.02 0.25 9.57 127.69 1.22 1.48 16 4 C 0.06 0.82 4.96 86.31 0.43 1.25 16 5 C -0.11 -1.68 5.51 30.60 0.17 -1.51 16 6 C 0.05 1.02 4.74 71.98 0.34 1.36 16 7 O -0.32 -8.32 10.13 -91.86 -0.93 -9.25 16 8 C 0.13 3.87 6.69 22.57 0.15 4.02 16 9 C -0.16 -4.96 9.97 22.33 0.22 -4.74 16 10 C -0.06 -2.10 9.56 22.47 0.21 -1.88 16 11 C -0.08 -3.63 5.88 -20.04 -0.12 -3.74 16 12 C 0.14 6.91 6.73 41.84 0.28 7.19 16 13 C -0.22 -11.84 8.14 23.07 0.19 -11.65 16 14 C 0.09 5.15 5.60 -21.12 -0.12 5.03 16 15 C -0.49 -25.70 9.12 23.52 0.21 -25.48 16 16 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 17 C 0.04 1.86 5.20 85.29 0.44 2.30 16 18 N -0.81 -40.88 10.93 21.84 0.24 -40.65 16 19 Si 0.99 36.46 29.59 68.60 2.03 38.49 16 20 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.29 -14.57 9.90 22.86 0.23 -14.34 16 24 C 0.10 4.73 11.15 84.55 0.94 5.67 16 25 N -0.58 -28.20 9.39 -185.39 -1.74 -29.94 16 26 C -0.07 -2.84 9.41 22.47 0.21 -2.63 16 27 C -0.20 -6.39 9.02 22.33 0.20 -6.18 16 28 H 0.03 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 30 H 0.07 0.88 6.47 -2.39 -0.02 0.87 16 31 H 0.07 0.75 8.12 -2.38 -0.02 0.73 16 32 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 33 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 34 H 0.04 0.55 8.12 -2.39 -0.02 0.53 16 35 H 0.08 1.07 8.06 -2.38 -0.02 1.05 16 36 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.18 6.55 -2.39 -0.02 1.16 16 38 H 0.07 1.21 7.65 -2.39 -0.02 1.19 16 39 H 0.07 1.25 7.66 -2.38 -0.02 1.24 16 40 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 41 H 0.14 5.05 7.52 -2.91 -0.02 5.02 16 42 H 0.12 6.63 4.32 -2.91 -0.01 6.62 16 43 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 44 H 0.11 5.18 8.06 -2.91 -0.02 5.15 16 45 H 0.16 5.96 8.06 -2.91 -0.02 5.94 16 46 H 0.12 4.88 6.17 -2.91 -0.02 4.86 16 47 H 0.15 3.73 6.28 -2.91 -0.02 3.71 16 Total: -1.00 -62.58 384.81 2.21 -60.37 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.96 Total: 36.22 kcal Atomic # 6 Polarization: -48.89 SS G_CDS: 6.41 Total: -42.47 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -6.26 Total: -83.35 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -0.93 Total: -9.25 kcal Atomic # 14 Polarization: 36.46 SS G_CDS: 2.03 Total: 38.49 kcal Total: -62.58 2.21 -60.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245335506.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -62.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds