Wall clock time and date at job start Tue Mar 31 2020 14:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00423 * 2 1 4 4 C 1.46911 * 110.99598 * 123.94876 * 2 1 3 5 5 C 1.52994 * 109.46951 * 66.04625 * 4 2 1 6 6 C 1.53001 * 109.47249 * 180.02562 * 5 4 2 7 7 O 1.42893 * 109.47156 * 180.02562 * 6 5 4 8 8 C 1.35785 * 116.99785 * 179.97438 * 7 6 5 9 9 C 1.39000 * 119.90557 * 179.97438 * 8 7 6 10 10 C 1.37725 * 120.09617 * 180.02562 * 9 8 7 11 11 C 1.39785 * 119.90139 * 359.97438 * 10 9 8 12 12 C 1.47685 * 120.09112 * 179.97438 * 11 10 9 13 13 N 1.32636 * 120.00086 * 316.03757 * 12 11 10 14 14 C 1.31725 * 121.71446 * 179.97438 * 13 12 11 15 15 C 1.38882 * 121.51390 * 0.03097 * 14 13 12 16 16 C 1.36874 * 119.81002 * 359.97162 * 15 14 13 17 17 C 1.41119 * 118.40164 * 0.25553 * 16 15 14 18 18 C 1.40853 * 120.72142 * 179.74773 * 17 16 15 19 19 H 1.07998 * 120.00471 * 151.24580 * 18 17 16 20 20 C 1.40047 * 119.99592 * 331.24735 * 18 17 16 21 21 N 1.30787 * 120.00112 * 348.69525 * 20 18 17 22 22 Si 1.86807 * 119.99536 * 168.69806 * 20 18 17 23 23 H 1.48500 * 109.47037 * 90.00108 * 22 20 18 24 24 H 1.48509 * 109.46572 * 209.99648 * 22 20 18 25 25 H 1.48498 * 109.47169 * 329.99380 * 22 20 18 26 26 C 1.39780 * 119.81683 * 0.25732 * 11 10 9 27 27 C 1.37729 * 119.89970 * 359.48579 * 26 11 10 28 28 H 1.09001 * 109.46878 * 296.05548 * 1 2 3 29 29 H 1.09007 * 109.46529 * 56.04865 * 1 2 3 30 30 H 1.08997 * 109.47558 * 176.04854 * 1 2 3 31 31 H 1.09003 * 109.47618 * 183.95208 * 3 2 1 32 32 H 1.09007 * 109.46656 * 303.95161 * 3 2 1 33 33 H 1.08997 * 109.47425 * 63.94699 * 3 2 1 34 34 H 1.08998 * 109.47072 * 306.04824 * 4 2 1 35 35 H 1.09002 * 109.46927 * 186.04443 * 4 2 1 36 36 H 1.09000 * 109.47195 * 59.99665 * 5 4 2 37 37 H 1.08999 * 109.47610 * 299.99910 * 5 4 2 38 38 H 1.08995 * 109.47078 * 59.99311 * 6 5 4 39 39 H 1.09002 * 109.46718 * 299.99873 * 6 5 4 40 40 H 1.08004 * 119.95032 * 359.97438 * 9 8 7 41 41 H 1.07999 * 120.04835 * 180.02562 * 10 9 8 42 42 H 1.08004 * 119.24735 * 179.97438 * 14 13 12 43 43 H 1.07996 * 120.09324 * 179.97438 * 15 14 13 44 44 H 1.08005 * 120.79764 * 179.97438 * 16 15 14 45 45 H 0.97004 * 119.99520 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.05359 * 179.74510 * 26 11 10 47 47 H 1.08006 * 119.95651 * 180.23089 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1378 5 6 1.6313 -2.2425 0.9706 6 6 2.1790 -3.0402 2.1558 7 8 1.8395 -4.4194 1.9994 8 6 2.2544 -5.2706 2.9725 9 6 1.9569 -6.6253 2.8814 10 6 2.3753 -7.4920 3.8665 11 6 3.1008 -7.0076 4.9588 12 6 3.5511 -7.9333 6.0178 13 7 2.7232 -8.8570 6.4874 14 6 3.0895 -9.6999 7.4310 15 6 4.3635 -9.6630 7.9828 16 6 5.2683 -8.7345 7.5442 17 6 4.8682 -7.8311 6.5366 18 6 5.7582 -6.8523 6.0529 19 1 5.6657 -6.4921 5.0390 20 6 6.7630 -6.3463 6.8869 21 7 6.7440 -6.6098 8.1678 22 14 8.1303 -5.2948 6.1697 23 1 7.7265 -3.8662 6.2050 24 1 9.3679 -5.4792 6.9696 25 1 8.3836 -5.7031 4.7646 26 6 3.3937 -5.6438 5.0489 27 6 2.9759 -4.7849 4.0567 28 1 -0.3633 0.4514 0.9232 29 1 -0.3632 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0829 1.3431 -0.0708 32 1 1.5899 1.9162 -0.8525 33 1 1.7044 1.8723 0.9232 34 1 1.5610 -0.3871 2.0629 35 1 3.0797 -0.6611 1.1758 36 1 2.0657 -2.6213 0.0454 37 1 0.5471 -2.3474 0.9325 38 1 1.7443 -2.6612 3.0807 39 1 3.2633 -2.9354 2.1943 40 1 1.3959 -6.9986 2.0373 41 1 2.1441 -8.5445 3.7948 42 1 2.3827 -10.4362 7.7843 43 1 4.6393 -10.3650 8.7557 44 1 6.2632 -8.6912 7.9624 45 1 7.4399 -6.2589 8.7454 46 1 3.9504 -5.2648 5.8932 47 1 3.2050 -3.7315 4.1235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245338451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:02 Heat of formation + Delta-G solvation = 8.984464 kcal Electronic energy + Delta-G solvation = -26348.599625 eV Core-core repulsion = 22688.873501 eV Total energy + Delta-G solvation = -3659.726124 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.72095 -38.56946 -37.95704 -36.61635 -34.18825 -32.81130 -31.16591 -30.76939 -30.20371 -28.12637 -27.93791 -26.55918 -25.62852 -23.42391 -22.40929 -21.96818 -21.29888 -20.77154 -20.07589 -17.79847 -17.37345 -16.42163 -16.14630 -15.95313 -15.44500 -15.35693 -15.08162 -14.93373 -14.34707 -14.13069 -13.78887 -13.70198 -13.24102 -12.97599 -12.87840 -12.74002 -12.46478 -12.28120 -12.14185 -12.06644 -11.91547 -11.72651 -11.53865 -11.45434 -11.34034 -11.17013 -11.07620 -11.01207 -10.63035 -10.41327 -10.20608 -9.82113 -9.46784 -8.73811 -8.41907 -8.36075 -8.09111 -7.88057 -7.16472 -6.87689 -4.54998 1.85595 2.05717 2.61912 2.94396 2.96491 3.01851 3.13475 3.22990 3.78355 3.79859 4.44299 4.55318 4.63587 4.77071 4.84936 4.98270 5.03940 5.12907 5.22591 5.25056 5.32999 5.37360 5.44307 5.48596 5.51428 5.57182 5.59454 5.63014 5.85568 5.90714 6.07219 6.13997 6.21143 6.30037 6.36161 6.62767 6.63948 6.64914 6.73657 6.80419 6.89392 6.99121 7.01219 7.23982 7.35844 7.46356 7.68098 7.78976 7.87384 7.92658 8.35414 8.57536 8.64648 9.54867 9.97794 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.002776 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.638655 B =10085.155064 C =11858.773166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.057 3.943 5 C -0.115 4.115 6 C 0.063 3.937 7 O -0.320 6.320 8 C 0.105 3.895 9 C -0.158 4.158 10 C -0.072 4.072 11 C -0.011 4.011 12 C 0.019 3.981 13 N -0.455 5.455 14 C -0.031 4.031 15 C -0.151 4.151 16 C -0.128 4.128 17 C 0.084 3.916 18 C -0.441 4.441 19 H 0.088 0.912 20 C 0.073 3.927 21 N -0.791 5.791 22 Si 0.909 3.091 23 H -0.267 1.267 24 H -0.275 1.275 25 H -0.258 1.258 26 C -0.055 4.055 27 C -0.213 4.213 28 H 0.026 0.974 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.038 0.962 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.124 0.876 42 H 0.121 0.879 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.284 0.716 46 H 0.136 0.864 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.372 11.635 -10.225 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.153 4.153 6 C -0.014 4.014 7 O -0.235 6.235 8 C 0.060 3.940 9 C -0.177 4.177 10 C -0.091 4.091 11 C -0.012 4.012 12 C -0.119 4.119 13 N -0.163 5.163 14 C -0.191 4.191 15 C -0.172 4.172 16 C -0.153 4.153 17 C 0.080 3.920 18 C -0.470 4.470 19 H 0.106 0.894 20 C -0.146 4.146 21 N -0.416 5.416 22 Si 0.733 3.267 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.074 4.074 27 C -0.232 4.232 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.079 0.921 40 H 0.138 0.862 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.117 0.883 44 H 0.145 0.855 45 H 0.095 0.905 46 H 0.154 0.846 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.020 11.374 -10.931 16.885 hybrid contribution 1.436 1.040 1.287 2.191 sum -4.584 12.415 -9.645 16.375 Atomic orbital electron populations 1.22476 0.87254 1.02735 1.00464 1.61934 1.08226 1.13862 1.43111 1.22389 1.00921 0.88591 1.00530 1.22021 1.00593 0.93031 0.91476 1.21487 1.02179 0.93052 0.98569 1.22599 0.99946 0.80210 0.98599 1.85931 1.74721 1.17616 1.45188 1.18977 0.96603 0.89909 0.88487 1.20174 1.06059 0.90154 1.01293 1.21061 0.96478 0.99134 0.92397 1.18363 0.97226 0.92127 0.93517 1.19502 0.90846 0.99010 1.02509 1.67060 1.36319 1.02922 1.09955 1.21677 0.95566 1.01923 0.99982 1.21438 0.95759 0.99631 1.00341 1.21426 0.99682 0.94303 0.99931 1.18358 0.91045 0.91602 0.91032 1.19579 1.09779 1.18089 0.99574 0.89382 1.25991 0.98019 0.96186 0.94369 1.69751 1.31158 1.36362 1.04331 0.86266 0.79764 0.80153 0.80508 1.19185 1.19941 1.18160 1.21269 0.96092 0.92252 0.97784 1.21053 1.05497 0.99982 0.96687 0.95556 0.91394 0.90792 0.91201 0.91281 0.95603 0.94404 0.90291 0.89970 0.90894 0.92406 0.92099 0.86174 0.85792 0.86170 0.88347 0.85517 0.90486 0.84596 0.86376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.06 0.56 0.70 16 2 N -0.55 -4.77 5.02 -251.25 -1.26 -6.03 16 3 C 0.02 0.17 9.57 60.06 0.57 0.74 16 4 C 0.06 0.50 4.96 -3.82 -0.02 0.48 16 5 C -0.12 -1.14 5.51 -26.73 -0.15 -1.29 16 6 C 0.06 0.75 4.74 37.16 0.18 0.93 16 7 O -0.32 -4.98 10.13 -19.07 -0.19 -5.17 16 8 C 0.10 1.84 6.70 -39.02 -0.26 1.57 16 9 C -0.16 -2.83 9.97 -39.49 -0.39 -3.22 16 10 C -0.07 -1.43 9.66 -39.19 -0.38 -1.81 16 11 C -0.01 -0.25 5.25 -104.88 -0.55 -0.80 16 12 C 0.02 0.48 6.42 -82.25 -0.53 -0.05 16 13 N -0.45 -11.15 10.16 -9.18 -0.09 -11.24 16 14 C -0.03 -0.70 11.16 -17.36 -0.19 -0.90 16 15 C -0.15 -3.44 10.03 -39.84 -0.40 -3.84 16 16 C -0.13 -3.18 8.71 -38.98 -0.34 -3.52 16 17 C 0.08 2.15 5.54 -106.41 -0.59 1.56 16 18 C -0.44 -10.85 6.73 -37.92 -0.26 -11.11 16 19 H 0.09 2.13 6.49 -52.49 -0.34 1.79 16 20 C 0.07 1.70 5.26 -17.32 -0.09 1.61 16 21 N -0.79 -19.08 10.91 55.55 0.61 -18.47 16 22 Si 0.91 17.61 29.58 -169.99 -5.03 12.58 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.06 -1.14 7.84 -39.19 -0.31 -1.45 16 27 C -0.21 -3.81 9.02 -39.49 -0.36 -4.17 16 28 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 30 H 0.07 0.56 6.47 -51.93 -0.34 0.23 16 31 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 33 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 35 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.72 6.55 -51.93 -0.34 0.38 16 38 H 0.06 0.66 7.65 -51.93 -0.40 0.26 16 39 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 40 H 0.12 1.88 8.06 -52.48 -0.42 1.45 16 41 H 0.12 2.40 8.06 -52.49 -0.42 1.97 16 42 H 0.12 2.38 8.06 -52.48 -0.42 1.95 16 43 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 44 H 0.13 3.19 6.34 -52.48 -0.33 2.86 16 45 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 46 H 0.14 2.95 6.77 -52.49 -0.36 2.59 16 47 H 0.12 1.80 6.28 -52.48 -0.33 1.47 16 LS Contribution 383.19 15.07 5.77 5.77 Total: -1.00 -27.65 383.19 -10.72 -38.37 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -7.03 Total: 8.73 kcal Atomic # 6 Polarization: -21.04 SS G_CDS: -3.50 Total: -24.54 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: -0.75 Total: -35.75 kcal Atomic # 8 Polarization: -4.98 SS G_CDS: -0.19 Total: -5.17 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.65 -10.72 -38.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245338451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.354 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds