Wall clock time and date at job start Tue Mar 31 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00423 * 2 1 4 4 C 1.46911 * 110.99598 * 123.94876 * 2 1 3 5 5 C 1.52994 * 109.46951 * 66.04625 * 4 2 1 6 6 C 1.53001 * 109.47249 * 180.02562 * 5 4 2 7 7 O 1.42893 * 109.47156 * 180.02562 * 6 5 4 8 8 C 1.35785 * 116.99785 * 179.97438 * 7 6 5 9 9 C 1.39000 * 119.90557 * 179.97438 * 8 7 6 10 10 C 1.37725 * 120.09617 * 180.02562 * 9 8 7 11 11 C 1.39785 * 119.90139 * 359.97438 * 10 9 8 12 12 C 1.47685 * 120.09112 * 179.97438 * 11 10 9 13 13 N 1.32636 * 120.00086 * 316.03757 * 12 11 10 14 14 C 1.31725 * 121.71446 * 179.97438 * 13 12 11 15 15 C 1.38882 * 121.51390 * 0.03097 * 14 13 12 16 16 C 1.36874 * 119.81002 * 359.97162 * 15 14 13 17 17 C 1.41119 * 118.40164 * 0.25553 * 16 15 14 18 18 C 1.40853 * 120.72142 * 179.74773 * 17 16 15 19 19 H 1.07998 * 120.00471 * 151.24580 * 18 17 16 20 20 C 1.40047 * 119.99592 * 331.24735 * 18 17 16 21 21 N 1.30787 * 120.00112 * 348.69525 * 20 18 17 22 22 Si 1.86807 * 119.99536 * 168.69806 * 20 18 17 23 23 H 1.48500 * 109.47037 * 90.00108 * 22 20 18 24 24 H 1.48509 * 109.46572 * 209.99648 * 22 20 18 25 25 H 1.48498 * 109.47169 * 329.99380 * 22 20 18 26 26 C 1.39780 * 119.81683 * 0.25732 * 11 10 9 27 27 C 1.37729 * 119.89970 * 359.48579 * 26 11 10 28 28 H 1.09001 * 109.46878 * 296.05548 * 1 2 3 29 29 H 1.09007 * 109.46529 * 56.04865 * 1 2 3 30 30 H 1.08997 * 109.47558 * 176.04854 * 1 2 3 31 31 H 1.09003 * 109.47618 * 183.95208 * 3 2 1 32 32 H 1.09007 * 109.46656 * 303.95161 * 3 2 1 33 33 H 1.08997 * 109.47425 * 63.94699 * 3 2 1 34 34 H 1.08998 * 109.47072 * 306.04824 * 4 2 1 35 35 H 1.09002 * 109.46927 * 186.04443 * 4 2 1 36 36 H 1.09000 * 109.47195 * 59.99665 * 5 4 2 37 37 H 1.08999 * 109.47610 * 299.99910 * 5 4 2 38 38 H 1.08995 * 109.47078 * 59.99311 * 6 5 4 39 39 H 1.09002 * 109.46718 * 299.99873 * 6 5 4 40 40 H 1.08004 * 119.95032 * 359.97438 * 9 8 7 41 41 H 1.07999 * 120.04835 * 180.02562 * 10 9 8 42 42 H 1.08004 * 119.24735 * 179.97438 * 14 13 12 43 43 H 1.07996 * 120.09324 * 179.97438 * 15 14 13 44 44 H 1.08005 * 120.79764 * 179.97438 * 16 15 14 45 45 H 0.97004 * 119.99520 * 180.02562 * 21 20 18 46 46 H 1.08001 * 120.05359 * 179.74510 * 26 11 10 47 47 H 1.08006 * 119.95651 * 180.23089 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9954 -0.7660 1.1378 5 6 1.6313 -2.2425 0.9706 6 6 2.1790 -3.0402 2.1558 7 8 1.8395 -4.4194 1.9994 8 6 2.2544 -5.2706 2.9725 9 6 1.9569 -6.6253 2.8814 10 6 2.3753 -7.4920 3.8665 11 6 3.1008 -7.0076 4.9588 12 6 3.5511 -7.9333 6.0178 13 7 2.7232 -8.8570 6.4874 14 6 3.0895 -9.6999 7.4310 15 6 4.3635 -9.6630 7.9828 16 6 5.2683 -8.7345 7.5442 17 6 4.8682 -7.8311 6.5366 18 6 5.7582 -6.8523 6.0529 19 1 5.6657 -6.4921 5.0390 20 6 6.7630 -6.3463 6.8869 21 7 6.7440 -6.6098 8.1678 22 14 8.1303 -5.2948 6.1697 23 1 7.7265 -3.8662 6.2050 24 1 9.3679 -5.4792 6.9696 25 1 8.3836 -5.7031 4.7646 26 6 3.3937 -5.6438 5.0489 27 6 2.9759 -4.7849 4.0567 28 1 -0.3633 0.4514 0.9232 29 1 -0.3632 0.5740 -0.8525 30 1 -0.3634 -1.0252 -0.0708 31 1 3.0829 1.3431 -0.0708 32 1 1.5899 1.9162 -0.8525 33 1 1.7044 1.8723 0.9232 34 1 1.5610 -0.3871 2.0629 35 1 3.0797 -0.6611 1.1758 36 1 2.0657 -2.6213 0.0454 37 1 0.5471 -2.3474 0.9325 38 1 1.7443 -2.6612 3.0807 39 1 3.2633 -2.9354 2.1943 40 1 1.3959 -6.9986 2.0373 41 1 2.1441 -8.5445 3.7948 42 1 2.3827 -10.4362 7.7843 43 1 4.6393 -10.3650 8.7557 44 1 6.2632 -8.6912 7.9624 45 1 7.4399 -6.2589 8.7454 46 1 3.9504 -5.2648 5.8932 47 1 3.2050 -3.7315 4.1235 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245338451.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:01 Heat of formation + Delta-G solvation = -5.178541 kcal Electronic energy + Delta-G solvation = -26349.213779 eV Core-core repulsion = 22688.873501 eV Total energy + Delta-G solvation = -3660.340278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.11020 -40.20451 -38.75944 -37.96508 -35.98622 -33.78320 -32.74196 -32.50695 -31.76313 -29.66037 -28.49645 -27.60031 -27.28970 -24.50909 -23.98199 -23.47529 -22.63973 -21.75126 -21.61502 -19.33245 -18.96173 -17.72840 -17.33165 -17.32068 -16.86465 -16.27766 -16.14805 -15.92832 -15.75719 -15.66450 -15.24148 -14.76958 -14.63048 -14.46738 -14.28929 -14.08638 -13.76717 -13.31963 -13.28955 -13.24038 -13.18209 -12.95993 -12.77775 -12.71546 -12.65845 -12.39540 -12.30222 -12.18845 -12.06863 -11.61637 -11.59419 -11.42940 -11.20085 -10.22574 -9.93726 -9.86451 -9.61652 -9.34860 -8.81845 -8.58944 -6.39918 0.25385 0.55369 0.89560 1.19291 1.37702 1.47945 1.52481 2.16796 2.17838 2.72819 2.94244 3.07665 3.69163 3.87828 3.90927 3.97044 4.02198 4.09810 4.16894 4.28342 4.38784 4.40220 4.47938 4.48987 4.51928 4.60207 4.63873 4.68523 4.73196 4.74406 4.81356 4.87324 4.99952 5.01728 5.02923 5.10719 5.14935 5.19487 5.22724 5.27707 5.43862 5.56073 5.79469 5.83098 5.93221 6.02701 6.03725 6.06050 6.06677 6.49194 6.57007 6.74707 6.81325 7.70924 8.24495 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.013263 B = 0.002776 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.638655 B =10085.155064 C =11858.773166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.562 5.562 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.105 4.105 6 C 0.055 3.945 7 O -0.323 6.323 8 C 0.116 3.884 9 C -0.156 4.156 10 C -0.075 4.075 11 C -0.045 4.045 12 C 0.007 3.993 13 N -0.472 5.472 14 C -0.039 4.039 15 C -0.151 4.151 16 C -0.152 4.152 17 C 0.054 3.946 18 C -0.457 4.457 19 H 0.084 0.916 20 C 0.038 3.962 21 N -0.820 5.820 22 Si 0.976 3.024 23 H -0.257 1.257 24 H -0.266 1.266 25 H -0.260 1.260 26 C -0.064 4.064 27 C -0.208 4.208 28 H 0.028 0.972 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.146 0.854 41 H 0.123 0.877 42 H 0.152 0.848 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.292 0.708 46 H 0.117 0.883 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.588 13.247 -11.517 18.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.143 4.143 6 C -0.021 4.021 7 O -0.237 6.237 8 C 0.070 3.930 9 C -0.175 4.175 10 C -0.094 4.094 11 C -0.046 4.046 12 C -0.132 4.132 13 N -0.180 5.180 14 C -0.199 4.199 15 C -0.171 4.171 16 C -0.178 4.178 17 C 0.050 3.950 18 C -0.486 4.486 19 H 0.102 0.898 20 C -0.179 4.179 21 N -0.445 5.445 22 Si 0.797 3.203 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.183 1.183 26 C -0.084 4.084 27 C -0.226 4.226 28 H 0.046 0.954 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.163 0.837 41 H 0.141 0.859 42 H 0.169 0.831 43 H 0.147 0.853 44 H 0.135 0.865 45 H 0.103 0.897 46 H 0.135 0.865 47 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -6.253 12.987 -12.222 18.898 hybrid contribution 1.393 0.576 1.633 2.222 sum -4.860 13.564 -10.589 17.881 Atomic orbital electron populations 1.22501 0.86743 1.02753 1.00995 1.61941 1.08866 1.14787 1.43070 1.22430 1.01131 0.87839 1.01066 1.21974 1.00923 0.92128 0.91792 1.21404 1.02040 0.93527 0.97291 1.22895 1.00718 0.78431 1.00027 1.85948 1.74352 1.19127 1.44291 1.19034 0.95324 0.90232 0.88367 1.20397 1.05541 0.90252 1.01261 1.21069 0.96372 0.99553 0.92417 1.18455 0.99427 0.92518 0.94180 1.19937 0.90749 0.99397 1.03070 1.67136 1.36578 1.03517 1.10726 1.22254 0.96278 1.02029 0.99346 1.21729 0.95355 0.99415 1.00579 1.21483 0.99899 0.95498 1.00880 1.18725 0.91910 0.92457 0.91914 1.19654 1.10771 1.18587 0.99621 0.89847 1.26756 0.99624 0.97043 0.94427 1.69796 1.32056 1.37243 1.05404 0.85267 0.76889 0.78696 0.79482 1.18181 1.19013 1.18346 1.21137 0.96749 0.92211 0.98259 1.21240 1.04688 1.00920 0.95788 0.95382 0.90466 0.91110 0.90923 0.90415 0.95342 0.94057 0.89864 0.90608 0.90815 0.91457 0.91357 0.83654 0.85868 0.83063 0.85298 0.86516 0.89732 0.86460 0.83668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.32 127.69 1.19 1.43 16 2 N -0.56 -8.64 5.02 -948.83 -4.76 -13.40 16 3 C 0.02 0.28 9.57 127.69 1.22 1.50 16 4 C 0.06 0.91 4.96 86.30 0.43 1.34 16 5 C -0.10 -1.85 5.51 30.59 0.17 -1.68 16 6 C 0.05 1.17 4.74 71.98 0.34 1.51 16 7 O -0.32 -9.24 10.13 -91.14 -0.92 -10.16 16 8 C 0.12 3.84 6.70 22.63 0.15 4.00 16 9 C -0.16 -5.35 9.97 22.33 0.22 -5.13 16 10 C -0.08 -3.00 9.66 22.52 0.22 -2.79 16 11 C -0.04 -2.04 5.25 -20.03 -0.11 -2.14 16 12 C 0.01 0.34 6.42 42.43 0.27 0.61 16 13 N -0.47 -23.48 10.16 -182.96 -1.86 -25.34 16 14 C -0.04 -1.77 11.16 84.86 0.95 -0.83 16 15 C -0.15 -6.88 10.03 22.10 0.22 -6.65 16 16 C -0.15 -7.78 8.71 22.66 0.20 -7.58 16 17 C 0.05 2.89 5.54 -21.02 -0.12 2.77 16 18 C -0.46 -23.24 6.73 23.35 0.16 -23.08 16 19 H 0.08 4.18 6.49 -2.91 -0.02 4.16 16 20 C 0.04 1.77 5.26 85.29 0.45 2.22 16 21 N -0.82 -40.31 10.91 21.85 0.24 -40.07 16 22 Si 0.98 36.01 29.58 68.60 2.03 38.04 16 23 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 24 H -0.27 -9.35 7.11 99.48 0.71 -8.64 16 25 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 26 C -0.06 -2.71 7.84 22.52 0.18 -2.53 16 27 C -0.21 -7.16 9.02 22.33 0.20 -6.96 16 28 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.08 0.85 8.12 -2.38 -0.02 0.83 16 30 H 0.07 0.96 6.47 -2.39 -0.02 0.94 16 31 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.08 0.78 8.12 -2.38 -0.02 0.76 16 33 H 0.03 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.04 0.60 8.12 -2.39 -0.02 0.59 16 35 H 0.08 1.19 8.06 -2.39 -0.02 1.17 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.07 1.30 6.55 -2.39 -0.02 1.28 16 38 H 0.07 1.34 7.65 -2.39 -0.02 1.33 16 39 H 0.07 1.39 7.65 -2.39 -0.02 1.37 16 40 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 41 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.15 5.77 8.06 -2.91 -0.02 5.74 16 43 H 0.13 4.93 8.06 -2.91 -0.02 4.91 16 44 H 0.12 6.10 6.34 -2.91 -0.02 6.08 16 45 H 0.29 12.94 8.30 -92.71 -0.77 12.17 16 46 H 0.12 5.29 6.77 -2.91 -0.02 5.27 16 47 H 0.15 4.09 6.28 -2.91 -0.02 4.08 16 Total: -1.00 -60.27 383.19 2.03 -58.24 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.96 Total: 36.69 kcal Atomic # 6 Polarization: -50.34 SS G_CDS: 6.34 Total: -43.99 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -6.38 Total: -78.82 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: -0.92 Total: -10.16 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.04 kcal Total: -60.27 2.03 -58.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245338451.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.061 kcal (2) G-P(sol) polarization free energy of solvation -60.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds