Wall clock time and date at job start Tue Mar 31 2020 14:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99790 * 2 1 4 4 C 1.46899 * 111.00186 * 123.95332 * 2 1 3 5 5 C 1.53001 * 109.46711 * 66.05115 * 4 2 1 6 6 C 1.52998 * 109.46926 * 180.02562 * 5 4 2 7 7 O 1.42902 * 109.47224 * 179.97438 * 6 5 4 8 8 C 1.35787 * 116.99916 * 179.97438 * 7 6 5 9 9 C 1.38982 * 119.90976 * 180.02562 * 8 7 6 10 10 C 1.37747 * 120.08841 * 180.02562 * 9 8 7 11 11 C 1.39723 * 119.91069 * 359.97438 * 10 9 8 12 12 C 1.47842 * 120.08506 * 179.97438 * 11 10 9 13 13 C 1.39971 * 119.45123 * 179.97438 * 12 11 10 14 14 C 1.36560 * 119.45907 * 180.02562 * 13 12 11 15 15 C 1.41325 * 118.42263 * 0.27839 * 14 13 12 16 16 C 1.41028 * 120.54478 * 179.72064 * 15 14 13 17 17 H 1.07995 * 120.00090 * 203.71233 * 16 15 14 18 18 C 1.39992 * 120.00327 * 23.72060 * 16 15 14 19 19 N 1.30818 * 119.99919 * 17.63222 * 18 16 15 20 20 Si 1.86796 * 120.00330 * 197.63891 * 18 16 15 21 21 H 1.48496 * 109.47429 * 89.99222 * 20 18 16 22 22 H 1.48505 * 109.47168 * 209.99899 * 20 18 16 23 23 H 1.48510 * 109.46827 * 329.99570 * 20 18 16 24 24 C 1.40953 * 118.90319 * 359.45835 * 15 14 13 25 25 N 1.31257 * 120.40206 * 0.55050 * 24 15 14 26 26 C 1.39709 * 119.82607 * 0.24893 * 11 10 9 27 27 C 1.37759 * 119.90520 * 359.49686 * 26 11 10 28 28 H 1.08997 * 109.46814 * 296.04353 * 1 2 3 29 29 H 1.08993 * 109.47069 * 56.04463 * 1 2 3 30 30 H 1.09001 * 109.46857 * 176.04221 * 1 2 3 31 31 H 1.08994 * 109.47342 * 183.95305 * 3 2 1 32 32 H 1.09000 * 109.47250 * 303.95570 * 3 2 1 33 33 H 1.09003 * 109.46727 * 63.95684 * 3 2 1 34 34 H 1.08998 * 109.47311 * 306.05066 * 4 2 1 35 35 H 1.08999 * 109.47024 * 186.04905 * 4 2 1 36 36 H 1.08998 * 109.47273 * 59.99928 * 5 4 2 37 37 H 1.08999 * 109.47205 * 299.99679 * 5 4 2 38 38 H 1.08998 * 109.47437 * 59.99742 * 6 5 4 39 39 H 1.09001 * 109.47100 * 299.99388 * 6 5 4 40 40 H 1.07994 * 119.95537 * 359.97438 * 9 8 7 41 41 H 1.08001 * 120.04764 * 179.97438 * 10 9 8 42 42 H 1.07996 * 120.26726 * 359.97438 * 13 12 11 43 43 H 1.08005 * 120.78427 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00235 * 180.02562 * 19 18 16 45 45 H 1.08005 * 119.79621 * 180.27418 * 24 15 14 46 46 H 1.07997 * 120.04958 * 179.74756 * 26 11 10 47 47 H 1.08001 * 119.94988 * 180.23019 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6316 -2.2426 0.9702 6 6 2.1794 -3.0403 2.1553 7 8 1.8390 -4.4194 1.9993 8 6 2.2540 -5.2706 2.9725 9 6 1.9566 -6.6252 2.8814 10 6 2.3753 -7.4919 3.8667 11 6 3.1003 -7.0077 4.9586 12 6 3.5511 -7.9344 6.0186 13 6 4.2770 -7.4351 7.1063 14 6 4.6940 -8.2910 8.0852 15 6 4.3785 -9.6628 7.9586 16 6 4.7919 -10.5869 8.9404 17 1 4.9009 -11.6311 8.6873 18 6 5.0609 -10.1508 10.2431 19 7 4.6133 -8.9909 10.6501 20 14 6.0592 -11.2249 11.4003 21 1 7.5008 -10.8982 11.2591 22 1 5.6300 -10.9766 12.8002 23 1 5.8401 -12.6542 11.0616 24 6 3.6390 -10.0911 6.8376 25 7 3.2606 -9.2293 5.9228 26 6 3.3932 -5.6446 5.0488 27 6 2.9754 -4.7852 4.0565 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3434 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9234 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6610 1.1756 36 1 2.0660 -2.6213 0.0450 37 1 0.5473 -2.3476 0.9322 38 1 1.7447 -2.6615 3.0803 39 1 3.2636 -2.9355 2.1937 40 1 1.3958 -6.9986 2.0374 41 1 2.1435 -8.5444 3.7955 42 1 4.5062 -6.3817 7.1702 43 1 5.2551 -7.9288 8.9341 44 1 4.8000 -8.6886 11.5527 45 1 3.3861 -11.1355 6.7286 46 1 3.9498 -5.2658 5.8932 47 1 3.2046 -3.7320 4.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245338482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:06 Heat of formation + Delta-G solvation = 7.178927 kcal Electronic energy + Delta-G solvation = -25406.715449 eV Core-core repulsion = 21746.911030 eV Total energy + Delta-G solvation = -3659.804418 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.85888 -38.59484 -38.03631 -36.81194 -34.26345 -32.87798 -31.14222 -30.96410 -30.25444 -28.61704 -28.00992 -26.78199 -25.27248 -23.57260 -22.54407 -22.22384 -21.29332 -20.65607 -20.31126 -17.96146 -17.50891 -16.52846 -16.31836 -15.92304 -15.56065 -15.45905 -15.13746 -15.02616 -14.58865 -14.04522 -13.86196 -13.66346 -13.38498 -13.01627 -12.88942 -12.82536 -12.79735 -12.39599 -12.22208 -12.15066 -11.98335 -11.77337 -11.75092 -11.52386 -11.43140 -11.35360 -11.14877 -10.91450 -10.67910 -10.55425 -10.39401 -9.91797 -9.52563 -8.80944 -8.57964 -8.39922 -8.31458 -8.09096 -7.18360 -6.96084 -4.56713 1.59141 1.83038 2.65144 2.91370 2.94666 2.96628 3.12170 3.14315 3.70700 3.72017 4.18705 4.53871 4.62333 4.69554 4.75967 4.87413 4.97081 5.03137 5.10585 5.16388 5.20240 5.22692 5.30230 5.31871 5.44999 5.48842 5.52409 5.62366 5.73002 5.78270 5.86787 5.92998 6.05240 6.18136 6.42014 6.49002 6.56636 6.57648 6.66151 6.71259 6.73569 6.83154 6.96287 7.14287 7.20533 7.29238 7.61228 7.72659 7.79070 7.86140 8.29531 8.49239 8.59248 9.53624 9.85925 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.032419 B = 0.001723 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.481499 B =16245.493855 C =16923.414856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.024 3.976 4 C 0.057 3.943 5 C -0.116 4.116 6 C 0.063 3.937 7 O -0.319 6.319 8 C 0.096 3.904 9 C -0.148 4.148 10 C -0.075 4.075 11 C -0.013 4.013 12 C -0.003 4.003 13 C -0.124 4.124 14 C -0.143 4.143 15 C 0.067 3.933 16 C -0.435 4.435 17 H 0.087 0.913 18 C 0.072 3.928 19 N -0.777 5.777 20 Si 0.916 3.084 21 H -0.265 1.265 22 H -0.275 1.275 23 H -0.258 1.258 24 C -0.016 4.016 25 N -0.450 5.450 26 C -0.097 4.097 27 C -0.202 4.202 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.060 0.940 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.100 0.900 43 H 0.127 0.873 44 H 0.287 0.713 45 H 0.129 0.871 46 H 0.123 0.877 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 15.519 -12.412 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.154 4.154 6 C -0.013 4.013 7 O -0.234 6.234 8 C 0.051 3.949 9 C -0.166 4.166 10 C -0.094 4.094 11 C -0.014 4.014 12 C -0.137 4.137 13 C -0.145 4.145 14 C -0.168 4.168 15 C 0.062 3.938 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.149 4.149 19 N -0.400 5.400 20 Si 0.740 3.260 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.182 1.182 24 C -0.182 4.182 25 N -0.157 5.157 26 C -0.116 4.116 27 C -0.220 4.220 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.141 0.859 41 H 0.154 0.846 42 H 0.118 0.882 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.916 15.151 -13.509 20.673 hybrid contribution 0.757 0.537 2.435 2.606 sum -3.158 15.688 -11.073 19.461 Atomic orbital electron populations 1.22478 0.87201 1.02759 1.00516 1.61931 1.08265 1.13886 1.43047 1.22392 1.00902 0.88565 1.00573 1.22012 1.00540 0.93000 0.91530 1.21493 1.02267 0.93070 0.98521 1.22601 0.99814 0.80196 0.98686 1.85951 1.74694 1.17630 1.45085 1.18945 0.97260 0.90011 0.88683 1.20306 1.05054 0.90111 1.01152 1.21109 0.96144 0.99860 0.92246 1.18635 0.96932 0.91885 0.93955 1.18742 1.08517 0.90016 0.96384 1.21301 0.99435 0.98707 0.95012 1.21323 1.02816 0.93713 0.98985 1.18618 0.89086 0.93275 0.92789 1.19673 1.37022 0.96320 0.93312 0.89479 1.26088 0.93856 0.95519 0.99408 1.69795 1.32296 1.19008 1.18946 0.86164 0.80326 0.81028 0.78505 1.18970 1.20022 1.18200 1.22448 1.03521 0.97605 0.94581 1.66921 1.18271 1.02309 1.28207 1.20983 0.99857 0.92551 0.98217 1.20975 1.04941 0.99787 0.96330 0.95534 0.91340 0.90788 0.91207 0.91236 0.95594 0.94426 0.90334 0.89930 0.90829 0.92441 0.92191 0.85935 0.84639 0.88168 0.85576 0.90218 0.85317 0.85924 0.86319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.32 60.07 0.56 0.69 16 2 N -0.55 -4.26 5.02 -251.26 -1.26 -5.52 16 3 C 0.02 0.15 9.57 60.07 0.57 0.72 16 4 C 0.06 0.43 4.96 -3.82 -0.02 0.42 16 5 C -0.12 -1.02 5.51 -26.73 -0.15 -1.17 16 6 C 0.06 0.66 4.74 37.16 0.18 0.84 16 7 O -0.32 -4.54 10.13 -19.07 -0.19 -4.73 16 8 C 0.10 1.53 6.70 -39.03 -0.26 1.27 16 9 C -0.15 -2.46 9.97 -39.49 -0.39 -2.85 16 10 C -0.07 -1.40 9.57 -39.21 -0.38 -1.78 16 11 C -0.01 -0.27 5.88 -104.86 -0.62 -0.88 16 12 C 0.00 -0.06 6.74 -82.76 -0.56 -0.62 16 13 C -0.12 -2.88 9.38 -39.54 -0.37 -3.25 16 14 C -0.14 -3.59 8.74 -39.01 -0.34 -3.93 16 15 C 0.07 1.72 5.59 -106.64 -0.60 1.12 16 16 C -0.43 -10.72 9.06 -37.87 -0.34 -11.07 16 17 H 0.09 2.03 7.91 -52.49 -0.41 1.61 16 18 C 0.07 1.67 5.17 -17.33 -0.09 1.58 16 19 N -0.78 -18.71 10.92 55.55 0.61 -18.10 16 20 Si 0.92 17.23 29.59 -169.99 -5.03 12.20 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 24 C -0.02 -0.41 10.97 -16.77 -0.18 -0.59 16 25 N -0.45 -10.96 9.38 -9.11 -0.09 -11.05 16 26 C -0.10 -1.72 9.41 -39.21 -0.37 -2.09 16 27 C -0.20 -3.14 9.02 -39.49 -0.36 -3.49 16 28 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.07 0.51 6.47 -51.93 -0.34 0.17 16 31 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 32 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 33 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 35 H 0.08 0.55 8.06 -51.93 -0.42 0.14 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.66 6.55 -51.93 -0.34 0.32 16 38 H 0.06 0.57 7.65 -51.93 -0.40 0.17 16 39 H 0.06 0.59 7.65 -51.93 -0.40 0.19 16 40 H 0.12 1.79 8.06 -52.49 -0.42 1.36 16 41 H 0.14 2.56 7.52 -52.49 -0.39 2.16 16 42 H 0.10 2.03 6.14 -52.49 -0.32 1.71 16 43 H 0.13 3.18 6.19 -52.48 -0.32 2.85 16 44 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 45 H 0.13 2.90 8.06 -52.48 -0.42 2.48 16 46 H 0.12 2.02 6.14 -52.49 -0.32 1.70 16 47 H 0.12 1.51 6.28 -52.49 -0.33 1.18 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -27.79 384.53 -10.81 -38.61 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.93 Total: 7.89 kcal Atomic # 6 Polarization: -21.37 SS G_CDS: -3.71 Total: -25.08 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.74 Total: -34.67 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.19 Total: -4.73 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.03 Total: 12.20 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.79 -10.81 -38.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245338482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.785 kcal (2) G-P(sol) polarization free energy of solvation -27.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds