Wall clock time and date at job start Tue Mar 31 2020 14:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46904 * 110.99790 * 2 1 4 4 C 1.46899 * 111.00186 * 123.95332 * 2 1 3 5 5 C 1.53001 * 109.46711 * 66.05115 * 4 2 1 6 6 C 1.52998 * 109.46926 * 180.02562 * 5 4 2 7 7 O 1.42902 * 109.47224 * 179.97438 * 6 5 4 8 8 C 1.35787 * 116.99916 * 179.97438 * 7 6 5 9 9 C 1.38982 * 119.90976 * 180.02562 * 8 7 6 10 10 C 1.37747 * 120.08841 * 180.02562 * 9 8 7 11 11 C 1.39723 * 119.91069 * 359.97438 * 10 9 8 12 12 C 1.47842 * 120.08506 * 179.97438 * 11 10 9 13 13 C 1.39971 * 119.45123 * 179.97438 * 12 11 10 14 14 C 1.36560 * 119.45907 * 180.02562 * 13 12 11 15 15 C 1.41325 * 118.42263 * 0.27839 * 14 13 12 16 16 C 1.41028 * 120.54478 * 179.72064 * 15 14 13 17 17 H 1.07995 * 120.00090 * 203.71233 * 16 15 14 18 18 C 1.39992 * 120.00327 * 23.72060 * 16 15 14 19 19 N 1.30818 * 119.99919 * 17.63222 * 18 16 15 20 20 Si 1.86796 * 120.00330 * 197.63891 * 18 16 15 21 21 H 1.48496 * 109.47429 * 89.99222 * 20 18 16 22 22 H 1.48505 * 109.47168 * 209.99899 * 20 18 16 23 23 H 1.48510 * 109.46827 * 329.99570 * 20 18 16 24 24 C 1.40953 * 118.90319 * 359.45835 * 15 14 13 25 25 N 1.31257 * 120.40206 * 0.55050 * 24 15 14 26 26 C 1.39709 * 119.82607 * 0.24893 * 11 10 9 27 27 C 1.37759 * 119.90520 * 359.49686 * 26 11 10 28 28 H 1.08997 * 109.46814 * 296.04353 * 1 2 3 29 29 H 1.08993 * 109.47069 * 56.04463 * 1 2 3 30 30 H 1.09001 * 109.46857 * 176.04221 * 1 2 3 31 31 H 1.08994 * 109.47342 * 183.95305 * 3 2 1 32 32 H 1.09000 * 109.47250 * 303.95570 * 3 2 1 33 33 H 1.09003 * 109.46727 * 63.95684 * 3 2 1 34 34 H 1.08998 * 109.47311 * 306.05066 * 4 2 1 35 35 H 1.08999 * 109.47024 * 186.04905 * 4 2 1 36 36 H 1.08998 * 109.47273 * 59.99928 * 5 4 2 37 37 H 1.08999 * 109.47205 * 299.99679 * 5 4 2 38 38 H 1.08998 * 109.47437 * 59.99742 * 6 5 4 39 39 H 1.09001 * 109.47100 * 299.99388 * 6 5 4 40 40 H 1.07994 * 119.95537 * 359.97438 * 9 8 7 41 41 H 1.08001 * 120.04764 * 179.97438 * 10 9 8 42 42 H 1.07996 * 120.26726 * 359.97438 * 13 12 11 43 43 H 1.08005 * 120.78427 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00235 * 180.02562 * 19 18 16 45 45 H 1.08005 * 119.79621 * 180.27418 * 24 15 14 46 46 H 1.07997 * 120.04958 * 179.74756 * 26 11 10 47 47 H 1.08001 * 119.94988 * 180.23019 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6316 -2.2426 0.9702 6 6 2.1794 -3.0403 2.1553 7 8 1.8390 -4.4194 1.9993 8 6 2.2540 -5.2706 2.9725 9 6 1.9566 -6.6252 2.8814 10 6 2.3753 -7.4919 3.8667 11 6 3.1003 -7.0077 4.9586 12 6 3.5511 -7.9344 6.0186 13 6 4.2770 -7.4351 7.1063 14 6 4.6940 -8.2910 8.0852 15 6 4.3785 -9.6628 7.9586 16 6 4.7919 -10.5869 8.9404 17 1 4.9009 -11.6311 8.6873 18 6 5.0609 -10.1508 10.2431 19 7 4.6133 -8.9909 10.6501 20 14 6.0592 -11.2249 11.4003 21 1 7.5008 -10.8982 11.2591 22 1 5.6300 -10.9766 12.8002 23 1 5.8401 -12.6542 11.0616 24 6 3.6390 -10.0911 6.8376 25 7 3.2606 -9.2293 5.9228 26 6 3.3932 -5.6446 5.0488 27 6 2.9754 -4.7852 4.0565 28 1 -0.3633 0.4512 0.9233 29 1 -0.3633 0.5740 -0.8524 30 1 -0.3633 -1.0252 -0.0709 31 1 3.0827 1.3434 -0.0708 32 1 1.5898 1.9164 -0.8524 33 1 1.7044 1.8723 0.9234 34 1 1.5612 -0.3873 2.0628 35 1 3.0798 -0.6610 1.1756 36 1 2.0660 -2.6213 0.0450 37 1 0.5473 -2.3476 0.9322 38 1 1.7447 -2.6615 3.0803 39 1 3.2636 -2.9355 2.1937 40 1 1.3958 -6.9986 2.0374 41 1 2.1435 -8.5444 3.7955 42 1 4.5062 -6.3817 7.1702 43 1 5.2551 -7.9288 8.9341 44 1 4.8000 -8.6886 11.5527 45 1 3.3861 -11.1355 6.7286 46 1 3.9498 -5.2658 5.8932 47 1 3.2046 -3.7320 4.1237 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245338482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:05 Heat of formation + Delta-G solvation = -6.934940 kcal Electronic energy + Delta-G solvation = -25407.327472 eV Core-core repulsion = 21746.911030 eV Total energy + Delta-G solvation = -3660.416442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12633 -40.22118 -38.78605 -38.05311 -36.01542 -33.74039 -32.76058 -32.60646 -31.73603 -30.15679 -28.49704 -27.67578 -26.86409 -24.66510 -24.05533 -23.58649 -22.44869 -21.85790 -21.62651 -19.38432 -19.08967 -17.78013 -17.32444 -17.27305 -16.93618 -16.37560 -16.14861 -16.00744 -15.69033 -15.52733 -15.15855 -14.88662 -14.73006 -14.42692 -14.34287 -14.14659 -13.76975 -13.53543 -13.38918 -13.30597 -13.13867 -12.94776 -12.84797 -12.68854 -12.52253 -12.40416 -12.30587 -12.19538 -12.06599 -11.76357 -11.57191 -11.47526 -11.22154 -10.26286 -10.01196 -9.92343 -9.87639 -9.34353 -8.85220 -8.61928 -6.42100 0.07846 0.48574 0.96394 1.14107 1.38939 1.52913 1.56476 2.15583 2.17218 2.58948 3.01559 3.07899 3.74108 3.76770 3.88385 3.92650 4.00162 4.09998 4.10781 4.26284 4.32458 4.38712 4.40152 4.44387 4.49100 4.53378 4.63639 4.71202 4.73146 4.74633 4.79657 4.87193 4.97093 5.00089 5.02457 5.10181 5.10832 5.16310 5.20549 5.29006 5.35558 5.40428 5.72897 5.77481 5.89501 5.95297 6.03899 6.04887 6.06755 6.44444 6.53583 6.67061 6.74191 7.67637 8.15387 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.032419 B = 0.001723 C = 0.001654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.481499 B =16245.493855 C =16923.414856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.563 5.563 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.107 4.107 6 C 0.055 3.945 7 O -0.326 6.326 8 C 0.109 3.891 9 C -0.153 4.153 10 C -0.080 4.080 11 C -0.052 4.052 12 C -0.004 4.004 13 C -0.131 4.131 14 C -0.160 4.160 15 C 0.039 3.961 16 C -0.467 4.467 17 H 0.090 0.910 18 C 0.035 3.965 19 N -0.809 5.809 20 Si 0.991 3.009 21 H -0.260 1.260 22 H -0.266 1.266 23 H -0.254 1.254 24 C -0.037 4.037 25 N -0.463 5.463 26 C -0.092 4.092 27 C -0.196 4.196 28 H 0.028 0.972 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.028 0.972 34 H 0.042 0.958 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.141 0.859 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.119 0.881 44 H 0.296 0.704 45 H 0.139 0.861 46 H 0.134 0.866 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 17.616 -13.038 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.287 5.287 3 C -0.125 4.125 4 C -0.068 4.068 5 C -0.145 4.145 6 C -0.020 4.020 7 O -0.240 6.240 8 C 0.064 3.936 9 C -0.172 4.172 10 C -0.099 4.099 11 C -0.053 4.053 12 C -0.139 4.139 13 C -0.151 4.151 14 C -0.185 4.185 15 C 0.035 3.965 16 C -0.495 4.495 17 H 0.108 0.892 18 C -0.183 4.183 19 N -0.433 5.433 20 Si 0.811 3.189 21 H -0.185 1.185 22 H -0.191 1.191 23 H -0.178 1.178 24 C -0.201 4.201 25 N -0.171 5.171 26 C -0.111 4.111 27 C -0.215 4.215 28 H 0.046 0.954 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.159 0.841 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.137 0.863 44 H 0.107 0.893 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.737 17.254 -14.154 22.628 hybrid contribution 0.579 0.129 2.382 2.455 sum -3.158 17.384 -11.772 21.231 Atomic orbital electron populations 1.22495 0.86837 1.02698 1.00978 1.61938 1.08786 1.14823 1.43202 1.22428 1.01166 0.87819 1.01037 1.21974 1.01001 0.92021 0.91757 1.21417 1.01966 0.93655 0.97441 1.22909 1.00885 0.78234 0.99975 1.85968 1.74372 1.19274 1.44386 1.19064 0.95727 0.90089 0.88715 1.20457 1.05063 0.90523 1.01116 1.21066 0.96315 0.99856 0.92616 1.18673 0.99678 0.92712 0.94267 1.19328 1.07355 0.90165 0.97046 1.21580 0.99062 0.99924 0.94488 1.21378 1.03604 0.94074 0.99465 1.18923 0.89972 0.94020 0.93633 1.19924 1.38747 0.96516 0.94298 0.89170 1.26946 0.94143 0.96806 1.00406 1.69827 1.33018 1.20526 1.19911 0.85053 0.78481 0.79061 0.76327 1.18484 1.19062 1.17783 1.22660 1.04128 0.98324 0.94954 1.66974 1.18755 1.02996 1.28350 1.21144 0.99340 0.91599 0.99043 1.21273 1.03829 1.01189 0.95178 0.95351 0.90585 0.91173 0.90809 0.90573 0.95306 0.93982 0.89656 0.90732 0.91060 0.91236 0.90915 0.84079 0.85723 0.85454 0.86318 0.89322 0.84408 0.84831 0.82866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.32 127.69 1.19 1.40 16 2 N -0.56 -7.55 5.02 -948.85 -4.76 -12.32 16 3 C 0.02 0.24 9.57 127.69 1.22 1.46 16 4 C 0.06 0.76 4.96 86.30 0.43 1.19 16 5 C -0.11 -1.61 5.51 30.59 0.17 -1.44 16 6 C 0.06 0.97 4.74 71.98 0.34 1.31 16 7 O -0.33 -8.26 10.13 -91.16 -0.92 -9.18 16 8 C 0.11 3.19 6.70 22.62 0.15 3.35 16 9 C -0.15 -4.85 9.97 22.33 0.22 -4.62 16 10 C -0.08 -2.97 9.57 22.51 0.22 -2.76 16 11 C -0.05 -2.11 5.88 -20.02 -0.12 -2.23 16 12 C 0.00 -0.18 6.74 41.92 0.28 0.10 16 13 C -0.13 -6.15 9.38 22.30 0.21 -5.95 16 14 C -0.16 -8.27 8.74 22.64 0.20 -8.07 16 15 C 0.04 2.08 5.59 -21.17 -0.12 1.97 16 16 C -0.47 -23.80 9.06 23.38 0.21 -23.59 16 17 H 0.09 4.35 7.91 -2.91 -0.02 4.33 16 18 C 0.03 1.63 5.17 85.27 0.44 2.07 16 19 N -0.81 -39.66 10.92 21.84 0.24 -39.42 16 20 Si 0.99 35.29 29.59 68.60 2.03 37.32 16 21 H -0.26 -9.02 7.11 99.48 0.71 -8.31 16 22 H -0.27 -9.00 7.11 99.48 0.71 -8.30 16 23 H -0.25 -8.80 7.11 99.48 0.71 -8.10 16 24 C -0.04 -1.91 10.97 85.44 0.94 -0.98 16 25 N -0.46 -23.35 9.38 -182.74 -1.71 -25.06 16 26 C -0.09 -3.09 9.41 22.51 0.21 -2.88 16 27 C -0.20 -5.47 9.02 22.33 0.20 -5.27 16 28 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.08 0.75 8.12 -2.39 -0.02 0.73 16 30 H 0.07 0.85 6.47 -2.39 -0.02 0.84 16 31 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 32 H 0.08 0.65 8.12 -2.39 -0.02 0.63 16 33 H 0.03 0.27 8.14 -2.39 -0.02 0.25 16 34 H 0.04 0.50 8.12 -2.39 -0.02 0.48 16 35 H 0.09 0.95 8.06 -2.39 -0.02 0.94 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.07 1.11 6.55 -2.39 -0.02 1.10 16 38 H 0.07 1.10 7.65 -2.39 -0.02 1.08 16 39 H 0.07 1.13 7.65 -2.39 -0.02 1.12 16 40 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 41 H 0.12 4.83 7.52 -2.91 -0.02 4.81 16 42 H 0.13 5.11 6.14 -2.91 -0.02 5.09 16 43 H 0.12 6.20 6.19 -2.91 -0.02 6.18 16 44 H 0.30 12.92 8.30 -92.71 -0.77 12.15 16 45 H 0.14 6.54 8.06 -2.91 -0.02 6.52 16 46 H 0.13 4.10 6.14 -2.91 -0.02 4.08 16 47 H 0.15 3.18 6.28 -2.91 -0.02 3.16 16 Total: -1.00 -61.05 384.53 2.23 -58.82 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.97 Total: 34.79 kcal Atomic # 6 Polarization: -51.34 SS G_CDS: 6.40 Total: -44.94 kcal Atomic # 7 Polarization: -70.57 SS G_CDS: -6.24 Total: -76.80 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: -0.92 Total: -9.18 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -61.05 2.23 -58.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245338482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.889 kcal (2) G-P(sol) polarization free energy of solvation -61.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds