Wall clock time and date at job start Tue Mar 31 2020 14:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00123 * 2 1 4 4 C 1.46905 * 111.00241 * 123.95515 * 2 1 3 5 5 C 1.52999 * 109.46944 * 66.05006 * 4 2 1 6 6 C 1.52999 * 109.46999 * 180.02562 * 5 4 2 7 7 O 1.42905 * 109.47084 * 179.97438 * 6 5 4 8 8 C 1.35794 * 116.99917 * 179.97438 * 7 6 5 9 9 C 1.38991 * 119.90359 * 179.97438 * 8 7 6 10 10 C 1.37749 * 120.09005 * 180.27482 * 9 8 7 11 11 C 1.39772 * 119.90466 * 359.48123 * 10 9 8 12 12 C 1.47732 * 120.09308 * 180.25113 * 11 10 9 13 13 C 1.39390 * 120.79256 * 130.29111 * 12 11 10 14 14 N 1.31641 * 120.65364 * 179.97438 * 13 12 11 15 15 C 1.32246 * 122.51070 * 0.02562 * 14 13 12 16 16 C 1.36437 * 121.52561 * 359.97438 * 15 14 13 17 17 C 1.41142 * 119.11553 * 359.74825 * 16 15 14 18 18 C 1.40877 * 121.11429 * 180.27620 * 17 16 15 19 19 H 1.07995 * 119.99935 * 154.67751 * 18 17 16 20 20 C 1.40156 * 119.99749 * 334.68104 * 18 17 16 21 21 N 1.30700 * 119.99805 * 344.80483 * 20 18 17 22 22 Si 1.86797 * 119.99804 * 164.80352 * 20 18 17 23 23 H 1.48504 * 109.46950 * 90.00210 * 22 20 18 24 24 H 1.48504 * 109.47019 * 209.99762 * 22 20 18 25 25 H 1.48492 * 109.47536 * 329.99727 * 22 20 18 26 26 C 1.39774 * 119.81353 * 0.54291 * 11 10 9 27 27 C 1.37738 * 119.90499 * 359.70663 * 26 11 10 28 28 H 1.09005 * 109.47076 * 296.04007 * 1 2 3 29 29 H 1.08999 * 109.47446 * 56.04566 * 1 2 3 30 30 H 1.09004 * 109.47002 * 176.04425 * 1 2 3 31 31 H 1.08997 * 109.47621 * 183.95835 * 3 2 1 32 32 H 1.09003 * 109.47070 * 303.96250 * 3 2 1 33 33 H 1.09006 * 109.46611 * 63.95356 * 3 2 1 34 34 H 1.08999 * 109.47127 * 306.04810 * 4 2 1 35 35 H 1.09000 * 109.47000 * 186.04661 * 4 2 1 36 36 H 1.09002 * 109.47607 * 59.99487 * 5 4 2 37 37 H 1.09008 * 109.47142 * 299.99965 * 5 4 2 38 38 H 1.08999 * 109.47352 * 59.99633 * 6 5 4 39 39 H 1.09000 * 109.46721 * 299.99518 * 6 5 4 40 40 H 1.07993 * 119.95463 * 0.02562 * 9 8 7 41 41 H 1.07998 * 120.04061 * 179.72395 * 10 9 8 42 42 H 1.08001 * 119.67208 * 359.97438 * 13 12 11 43 43 H 1.07996 * 119.23733 * 179.97438 * 15 14 13 44 44 H 1.08002 * 120.44190 * 179.97438 * 16 15 14 45 45 H 0.97003 * 119.99944 * 180.02562 * 21 20 18 46 46 H 1.08006 * 120.04552 * 179.72929 * 26 11 10 47 47 H 1.08003 * 119.95020 * 180.02562 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6316 -2.2427 0.9702 6 6 2.1794 -3.0404 2.1553 7 8 1.8390 -4.4195 1.9993 8 6 2.2540 -5.2708 2.9725 9 6 1.9556 -6.6253 2.8818 10 6 2.3698 -7.4913 3.8696 11 6 3.1004 -7.0080 4.9588 12 6 3.5515 -7.9341 6.0177 13 6 4.8775 -7.9350 6.4476 14 7 5.2763 -8.7611 7.3918 15 6 4.4589 -9.6212 7.9755 16 6 3.1418 -9.7017 7.6288 17 6 2.6416 -8.8421 6.6273 18 6 1.2876 -8.8853 6.2406 19 1 0.8208 -8.0116 5.8103 20 6 0.5464 -10.0620 6.4144 21 7 1.1598 -11.1920 6.6489 22 14 -1.3181 -10.0152 6.3108 23 1 -1.7419 -10.2504 4.9071 24 1 -1.8891 -11.0722 7.1838 25 1 -1.8057 -8.6862 6.7590 26 6 3.3979 -5.6451 5.0462 27 6 2.9754 -4.7851 4.0567 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3633 -1.0253 -0.0709 31 1 3.0827 1.3433 -0.0709 32 1 1.5897 1.9164 -0.8524 33 1 1.7043 1.8723 0.9234 34 1 1.5611 -0.3873 2.0628 35 1 3.0798 -0.6611 1.1756 36 1 2.0659 -2.6214 0.0450 37 1 0.5472 -2.3476 0.9322 38 1 1.7447 -2.6616 3.0803 39 1 3.2637 -2.9355 2.1937 40 1 1.3948 -6.9985 2.0377 41 1 2.1337 -8.5429 3.8006 42 1 5.5846 -7.2513 6.0016 43 1 4.8428 -10.2752 8.7445 44 1 2.4898 -10.4111 8.1168 45 1 0.6468 -12.0066 6.7688 46 1 3.9584 -5.2669 5.8884 47 1 3.2052 -3.7319 4.1233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245338852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:23 Heat of formation + Delta-G solvation = 6.796863 kcal Electronic energy + Delta-G solvation = -26188.502785 eV Core-core repulsion = 22528.681799 eV Total energy + Delta-G solvation = -3659.820986 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 326.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.76649 -38.55356 -37.99379 -36.71652 -34.24030 -32.88352 -31.43988 -30.58338 -30.01619 -27.98835 -27.85209 -26.66578 -25.85336 -23.40054 -22.64524 -21.76669 -21.36706 -20.81973 -20.06244 -17.88758 -17.56747 -16.46969 -16.12323 -15.68031 -15.41482 -15.36206 -15.07404 -14.98439 -14.52527 -14.32015 -13.81056 -13.71284 -13.13462 -12.94070 -12.85501 -12.75796 -12.61267 -12.41846 -12.25645 -12.11305 -11.99580 -11.80704 -11.56874 -11.49026 -11.37631 -11.23386 -11.17490 -10.91582 -10.50867 -10.34126 -10.28638 -9.82341 -9.50641 -8.77605 -8.42597 -8.27044 -8.03204 -7.82454 -7.17679 -6.87939 -4.65449 1.85177 1.96925 2.70955 2.84041 2.97603 3.02362 3.18773 3.19780 3.75737 3.78611 4.41524 4.56625 4.58637 4.73303 4.80465 4.93022 5.00321 5.07744 5.16820 5.20791 5.27597 5.30981 5.38806 5.40501 5.47366 5.56255 5.59029 5.73810 5.81405 5.86405 5.90598 6.04229 6.05882 6.26578 6.37197 6.59975 6.60900 6.61300 6.78848 6.81335 6.85348 6.97146 7.04218 7.29945 7.33416 7.39760 7.51520 7.77403 7.87630 8.03547 8.37808 8.63151 8.67390 9.57959 9.94678 Molecular weight = 326.17amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.002486 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.816978 B =11261.667179 C =12708.573466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.548 5.548 3 C 0.024 3.976 4 C 0.057 3.943 5 C -0.116 4.116 6 C 0.064 3.936 7 O -0.320 6.320 8 C 0.100 3.900 9 C -0.153 4.153 10 C -0.061 4.061 11 C -0.010 4.010 12 C -0.230 4.230 13 C 0.127 3.873 14 N -0.578 5.578 15 C 0.080 3.920 16 C -0.207 4.207 17 C 0.144 3.856 18 C -0.441 4.441 19 H 0.087 0.913 20 C 0.077 3.923 21 N -0.779 5.779 22 Si 0.909 3.091 23 H -0.266 1.266 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.093 4.093 27 C -0.209 4.209 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.025 0.975 34 H 0.037 0.963 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.121 0.879 41 H 0.135 0.865 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.126 0.874 45 H 0.285 0.715 46 H 0.117 0.883 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.579 16.403 -9.516 19.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.124 4.124 4 C -0.071 4.071 5 C -0.154 4.154 6 C -0.012 4.012 7 O -0.234 6.234 8 C 0.056 3.944 9 C -0.172 4.172 10 C -0.079 4.079 11 C -0.011 4.011 12 C -0.236 4.236 13 C -0.032 4.032 14 N -0.293 5.293 15 C -0.068 4.068 16 C -0.230 4.230 17 C 0.136 3.864 18 C -0.471 4.471 19 H 0.105 0.895 20 C -0.143 4.143 21 N -0.404 5.404 22 Si 0.732 3.268 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.111 4.111 27 C -0.228 4.228 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.056 0.944 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.078 0.922 40 H 0.139 0.861 41 H 0.153 0.847 42 H 0.138 0.862 43 H 0.135 0.865 44 H 0.144 0.856 45 H 0.096 0.904 46 H 0.135 0.865 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.687 15.858 -9.770 18.703 hybrid contribution -1.953 0.408 0.662 2.102 sum -3.640 16.267 -9.108 18.995 Atomic orbital electron populations 1.22479 0.87197 1.02781 1.00492 1.61929 1.08269 1.13859 1.43082 1.22390 1.00886 0.88593 1.00553 1.22012 1.00507 0.93033 0.91500 1.21496 1.02280 0.93041 0.98558 1.22583 0.99738 0.80303 0.98612 1.85956 1.74740 1.17569 1.45165 1.18960 0.96951 0.89960 0.88551 1.20311 1.05405 0.90126 1.01311 1.21271 0.95086 0.99934 0.91588 1.18625 0.96715 0.91941 0.93815 1.19518 0.94717 1.06262 1.03089 1.22094 0.92568 0.95451 0.93045 1.67308 1.38903 1.09592 1.13449 1.21711 0.91253 0.95859 0.97957 1.21910 0.96050 1.04336 1.00658 1.17755 0.92441 0.88083 0.88121 1.19590 0.94564 0.97986 1.34962 0.89521 1.26028 1.01497 0.94751 0.92065 1.69746 1.38575 0.99586 1.32453 0.86279 0.81581 0.79528 0.79381 1.19071 1.19897 1.18202 1.21067 0.99632 0.92666 0.97726 1.20958 1.05487 0.99665 0.96645 0.95539 0.91358 0.90772 0.91218 0.91258 0.95611 0.94438 0.90350 0.89950 0.90842 0.92491 0.92246 0.86076 0.84713 0.86195 0.86489 0.85632 0.90374 0.86466 0.86586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.32 60.06 0.56 0.70 16 2 N -0.55 -4.51 5.02 -251.25 -1.26 -5.77 16 3 C 0.02 0.16 9.57 60.06 0.57 0.73 16 4 C 0.06 0.47 4.96 -3.82 -0.02 0.45 16 5 C -0.12 -1.10 5.51 -26.73 -0.15 -1.24 16 6 C 0.06 0.72 4.74 37.16 0.18 0.89 16 7 O -0.32 -4.84 10.13 -19.09 -0.19 -5.03 16 8 C 0.10 1.69 6.70 -39.02 -0.26 1.43 16 9 C -0.15 -2.74 9.97 -39.48 -0.39 -3.13 16 10 C -0.06 -1.22 8.07 -39.19 -0.32 -1.53 16 11 C -0.01 -0.21 5.00 -104.87 -0.52 -0.73 16 12 C -0.23 -5.41 5.54 -104.04 -0.58 -5.99 16 13 C 0.13 2.91 10.71 -17.20 -0.18 2.72 16 14 N -0.58 -13.93 10.32 -13.36 -0.14 -14.07 16 15 C 0.08 1.90 11.08 -18.02 -0.20 1.70 16 16 C -0.21 -5.19 8.72 -39.13 -0.34 -5.54 16 17 C 0.14 3.64 5.59 -106.25 -0.59 3.05 16 18 C -0.44 -10.86 7.29 -37.86 -0.28 -11.13 16 19 H 0.09 2.11 6.71 -52.49 -0.35 1.76 16 20 C 0.08 1.81 5.22 -17.31 -0.09 1.72 16 21 N -0.78 -18.77 10.92 55.56 0.61 -18.16 16 22 Si 0.91 17.71 29.59 -169.99 -5.03 12.68 16 23 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 24 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 25 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 26 C -0.09 -1.69 9.54 -39.19 -0.37 -2.06 16 27 C -0.21 -3.40 9.02 -39.49 -0.36 -3.76 16 28 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.55 6.47 -51.93 -0.34 0.22 16 31 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 32 H 0.07 0.39 8.12 -51.93 -0.42 -0.03 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.04 0.30 8.12 -51.93 -0.42 -0.13 16 35 H 0.08 0.59 8.06 -51.93 -0.42 0.17 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.71 6.55 -51.92 -0.34 0.37 16 38 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 39 H 0.06 0.62 7.65 -51.93 -0.40 0.22 16 40 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 41 H 0.14 2.84 7.36 -52.49 -0.39 2.45 16 42 H 0.12 2.44 8.05 -52.49 -0.42 2.02 16 43 H 0.12 2.46 8.06 -52.49 -0.42 2.04 16 44 H 0.13 3.18 6.24 -52.49 -0.33 2.85 16 45 H 0.29 6.24 8.29 -40.82 -0.34 5.90 16 46 H 0.12 1.99 8.05 -52.48 -0.42 1.57 16 47 H 0.12 1.56 6.28 -52.48 -0.33 1.23 16 LS Contribution 384.22 15.07 5.79 5.79 Total: -1.00 -27.60 384.22 -10.63 -38.23 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.06 Total: 8.07 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: -3.34 Total: -21.73 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.79 Total: -38.01 kcal Atomic # 8 Polarization: -4.84 SS G_CDS: -0.19 Total: -5.03 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -27.60 -10.63 -38.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245338852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.027 kcal (2) G-P(sol) polarization free energy of solvation -27.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds